Ticket #68 (closed task: fixed)

Opened 13 years ago

Last modified 11 years ago

Test all format readers with omebf

Reported by: curtis Owned by: melissa
Priority: critical Milestone:
Component: bio-formats Severity: fatal
Keywords: Cc:
Blocked By: Blocking:

Description

The omebf tool allows Bio-Formats to be used with an OME installation to import all supported formats into OME on the server side. However, it is critical that the OME-XML Bio-Formats produces is well-formed and correct, or else the import will fail. By testing omebf with all of our sample data, and fixing any bugs we find in the OME-XML generation, we will be improving both the OME server-side import mechanism itself, as well as the OME-XML conversion in general.

Change History

comment:1 Changed 12 years ago by melissa

  • Severity set to fatal
melissa@zu:~/data/specs/iplab$ ome import -i 'OME::ImportEngine::BioFormats' Actin.IPL
Importing files
         1/4: [IN PROGRESS] Starting import
         3/4: [IN PROGRESS] Importing
Deleting Actin.IPL
         4/4: [FINISHED] Imported 0 images from 0 files. 1 scanned. 1 unknown format, 0 duplicates, 0 errors.
Exiting...
         4/4: [FINISHED] Imported 0 images from 0 files. 1 scanned. 1 unknown format, 0 duplicates, 0 errors.
Exiting...

Similar messages are produced for each format that is supported only by Bio-Formats.

comment:2 Changed 12 years ago by curtis

  • Milestone set to bio-formats-m1

comment:3 Changed 12 years ago by melissa

  • Status changed from new to closed
  • Resolution set to fixed

As of r3843, all formats have been tested, and all but one are working - see ticket #266.

comment:4 Changed 11 years ago by curtis

  • Milestone bio-formats-m1 deleted

Milestone bio-formats-m1 deleted

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