Ticket #91 (closed defect: fixed)

Opened 13 years ago

Last modified 13 years ago

IPLabReader fails to populate OME-XML metadata store

Reported by: curtis Owned by: melissa
Priority: major Milestone:
Component: bio-formats Severity:
Keywords: Cc:
Blocked By: Blocking:

Description (last modified by curtis) (diff)

curtis@rogue:~/svn/java/loci/formats$ showinf /media/hda1/data/Blend_Final/Blend_Final.IPL -omexml
Checking file format [IPLab]
Initializing reader
        Populating metadata
        Reading tags
Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: 1
        at loci.formats.ome.OMEXMLMetadataStore.setChannelGlobalMinMax(OMEXMLMetadataStore.java:569)
        at loci.formats.in.IPLabReader.initFile(IPLabReader.java:382)
        at loci.formats.FormatReader.getPixelType(FormatReader.java:247)
        at loci.formats.ImageReader.getPixelType(ImageReader.java:197)
        at loci.formats.FormatTools.testRead(FormatTools.java:253)
        at loci.formats.ImageReader.testRead(ImageReader.java:429)
        at loci.formats.ImageReader.main(ImageReader.java:489)

Change History

comment:1 Changed 13 years ago by curtis

  • Component changed from notebook to bio-formats
  • Description modified (diff)
  • Summary changed from Notebook fails to parse some files to IPLabReader fails to populate OME-XML metadata store

comment:2 Changed 13 years ago by melissa

  • Status changed from new to closed
  • Resolution set to fixed

Fixed in r2566. This was a bug in OMEXMLMetadataStore, not IPLabReader.

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