Ticket #97 (closed defect: fixed)

Opened 13 years ago

Last modified 13 years ago

Fix Leica color channel handling

Reported by: curtis Owned by: melissa
Priority: critical Milestone:
Component: bio-formats Severity:
Keywords: Cc:
Blocked By: Blocking:


Leica LEI files have multiple image series, often with differing numbers of color channels. Unfortunately, though constituent TIFF files are all RGB, only a subset of those channels are non-zero (that is, they are RGB TIFFs so that they look right to the user, but the zeroed channels are not really part of the raw data). However, in Dundee we discussed the idea of parsing the color names (red, green, blue, cyan, magenta, yellow, gray) from the metadata to correctly decide which channels to include in the raw data extraction.

Change History

comment:1 Changed 13 years ago by melissa

  • Status changed from new to closed
  • Resolution set to fixed

Fixed in r2567. Need to warn users that their data will look different.

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