Timeline


and

09/07/06:

17:21 Changeset [1443] by chris
Notebook: 1) Slight changes to avoid parsing strings in my code whenever …
14:42 Changeset [1442] by melissa
fixed Gatan bug
14:17 Changeset [1441] by melissa
fixed channel detection in LSM reader
13:56 Changeset [1440] by melissa
- fixed bug in DataTools.stripString - added LZO support to Compression - …
13:19 Changeset [1439] by curtis
Correct Javadoc typo.
12:55 Changeset [1438] by curtis
Use LookUtils.IS_OS_* instead of System.getProperty("os.name") when …
12:39 Changeset [1437] by curtis
Note that importer is for reading files. =)
11:12 Changeset [1436] by curtis
Add UltraView ERS and SlideBook to list of formats.
09:57 Changeset [1435] by curtis
Print more information about the command line options.
09:57 Changeset [1434] by curtis
Tweak.
09:22 Changeset [1433] by curtis
OMG, you just use "$@" instead of $*.
09:14 Changeset [1432] by curtis
Turn on indentation check, fix a few style issues in VisBio.

09/06/06:

17:39 Changeset [1431] by curtis
Whitespace.
17:13 Changeset [1430] by curtis
Fix NullPointerException when no arguments are given.
16:16 Changeset [1429] by chris
MetadataPane: 1) Quick reversion to old way of saving
16:14 Changeset [1428] by chris
CustomWindow: 1) Commented out wierd array manipulation that's totally …
15:53 Changeset [1427] by curtis
Eliminate jikes warnings.
15:51 Changeset [1426] by curtis
No more need for loci.ome.viewer with loci_plugins.jar.
15:50 Changeset [1425] by curtis
Wrap references to OME Notebook in reflection, so that the Data Browser …
15:23 Changeset [1424] by curtis
Fix problem with multiple command line arguments (breaks files with spaces …
15:17 Changeset [1423] by curtis
More tweaks to range selector.
15:11 Changeset [1422] by curtis
Add error checking for user-specified ranges; more accurate progress bar.
15:02 Changeset [1421] by curtis
Add option to select a range for each imported series.
15:01 Changeset [1420] by curtis
Style and other code fixes.
11:43 Changeset [1419] by chris
Browser: 1) made MetadataNotebook the new way to edit/view metadata when …
11:19 Changeset [1418] by melissa
added multi-series support for Leica LEI; fixed issue with spaces in …
10:22 Changeset [1417] by melissa
bugfixes in FileStitcher
09:59 Changeset [1416] by curtis
Add Z, T and C sliders to image viewer, for interactive testing of …

09/05/06:

15:41 Changeset [1415] by curtis
Fix Openlab bugs causing slow initialization and slow isRGB.
15:22 Changeset [1414] by curtis
Prepend "LOCI Bio-Formats: " to elapsed time for single image.
13:57 Changeset [1413] by curtis
Add checks for GenericDialog cancelation.
11:13 Changeset [1412] by curtis
Set debug flag to true, to preserve line numbers for stack traces.
11:12 Changeset [1411] by curtis
Do not show metadata by default.
11:12 Changeset [1410] by curtis
Quote $* variable to handle filenames with spaces.
10:38 Changeset [1409] by curtis
More tweaking around with file filters, for speed and accuracy. Now "All …

09/01/06:

17:32 Changeset [1408] by curtis
Make ImageReader's file filters also call isThisType(id, false). This …
16:21 Changeset [1407] by curtis
Fix weird NullPointerException in checkEfficiency.
15:23 Changeset [1406] by curtis
Add isThisType(String id, boolean open) method to FormatHandler API for …
14:46 Changeset [1405] by curtis
Print series dimensions (SizeX x SizeY x ImageCount) in the chooser; some …
12:00 Changeset [1404] by melissa
removed debugging statement from GIF reader
09:50 Changeset [1403] by melissa
Credited ImageJ plugin in comments.
09:31 Changeset [1402] by melissa
bugfixes

08/31/06:

16:03 Changeset [1401] by curtis
More style fixes.
14:58 Changeset [1400] by curtis
Be more liberal about terminating the IFD read loop when the offset is …
13:53 Changeset [1399] by curtis
Update testRead to print basic information about all series within the …
13:15 Changeset [1398] by melissa
* fixed a bug in Zeiss LSM reader * added thumbnail support to OIF reader
13:02 Changeset [1397] by melissa
added thumbnail support to Zeiss LSM reader
12:51 Changeset [1396] by melissa
updated TODO list
12:50 Changeset [1395] by melissa
fixed a bug in LIFReader
12:01 Changeset [1394] by melissa
added support for multi-series files to Data Browser
11:27 Changeset [1393] by melissa
added support for multiple series to OME-XML reader
11:16 Changeset [1392] by curtis
Change class comment to say "LegacyGIFReader."
08:10 Changeset [1391] by melissa
Modified GIF reader to open animated GIFs; defaults to ImageIO reader if …

08/30/06:

17:40 Changeset [1390] by curtis
Clean up some style issues in VisBio.
17:04 Changeset [1389] by curtis
Clean up style issues in Bio-Formats.
14:59 Changeset [1388] by curtis
Some work on style checking targets; fix some style issues.
13:25 Changeset [1387] by curtis
Add JPEG-2000 to the list of formats for eventual addition.
13:10 Changeset [1386] by melissa
* added API methods for retrieving thumbnails: - BufferedImage …
08:39 Changeset [1385] by melissa
* fixed a bug in how Zeiss LSM files are handled by TiffTools (files in …

08/29/06:

15:30 Changeset [1384] by greg
Initial version of freeform line overlay type.
15:20 Changeset [1383] by curtis
Cannot use Windows look and feel on non-Windows OSes.
15:15 Changeset [1382] by curtis
Fix some bugs in OME-XML output generation.
14:05 Changeset [1381] by curtis
Correct noeol at eof.
14:03 Changeset [1380] by curtis
Add package descriptions for the remaining packages.
13:59 Changeset [1379] by curtis
Slightly better guess for two-exponential function. But doesn't work.
13:21 Changeset [1378] by curtis
Add compile targets to build each package separately. Add target to check …
13:19 Changeset [1377] by curtis
Make some fields private.
13:15 Changeset [1376] by melissa
* moved OMEUpload to loci.formats * added API methods for switching …
12:55 Changeset [1375] by curtis
Fix compile error.
12:25 Changeset [1374] by curtis
Update todo list with API for multiple series and thumbnails.
11:05 Changeset [1373] by melissa
Added preliminary version of OME uploader to loci.ome package (can be …

08/28/06:

15:45 Changeset [1372] by curtis
Add (commented out) support for multiple exponentials.
15:22 Changeset [1371] by chris
slight changes to make javadoc better.
15:12 Changeset [1370] by chris
I'm satisfied that this program is now fairly robust. I've added javadoc …
14:46 Changeset [1369] by curtis
Larger scale bar font; minimum width for log window and intensity frame.
13:30 Changeset [1368] by curtis
Only set default directory to match ImageJ if it is not null.
11:05 Changeset [1367] by melissa
tweaked Leica LIF dimension detection

08/25/06:

16:18 Changeset [1366] by curtis
Trim down VisBio file formats documentation.
15:51 Changeset [1365] by curtis
Set default file chooser directory to match the rest of ImageJ.
15:37 Changeset [1364] by curtis
Use RandomAccessStream for isThisType(String) delving into file, instead …
15:21 Changeset [1363] by curtis
Fix bug where isThisType(byte[]) would identify any file starting with II …
15:16 Changeset [1362] by curtis
Tweaks.
15:16 Changeset [1361] by curtis
Use DataInputStream.readFully instead of looped read, for simplicity (no …
15:07 Changeset [1360] by curtis
Change UnsupportedMetadataStoreException to MetadataStoreException.
13:57 Changeset [1359] by curtis
List ome-java.jar as a dependency of Bio-Formats.
13:14 Changeset [1358] by curtis
Eliminate jikes warnings due to shadowed "store" field.
13:10 Changeset [1357] by curtis
Change UnsupportedMetadataStoreException to somewhat more general (and …
12:46 Changeset [1356] by curtis
Add simple metadata view option to Bio-Formats Importer plugin (just what …
12:14 Changeset [1355] by curtis
Remove comment about HandleExtraFileTypes, since we have our own version …
08:48 Changeset [1354] by melissa
fixed OME-Java dependency in LociImporter

08/24/06:

17:00 Changeset [1353] by curtis
Fix typo in variable.
15:51 Changeset [1352] by curtis
Comment out setGlobalChannelMinMax for now, since it is incredibly slow.
15:31 Changeset [1351] by curtis
Package descriptions for many packages.
15:02 Changeset [1350] by curtis
Must include Jama with LMA library.
14:58 Changeset [1349] by curtis
Version of LMA compiled with -target 1.4 -source 1.4.
12:47 Changeset [1348] by curtis
Improve curve fitting functionality.
10:43 Changeset [1347] by curtis
Eliminate silly centering behavior.
10:24 Changeset [1346] by melissa
* fixed OME plugin * tweaked Data Browser to be compatible with OME plugin …

08/23/06:

21:01 Changeset [1345] by chris
NotePane: 1) minor changes to make the new Tools>Export Notes menu item …
17:30 Changeset [1344] by curtis
Add lma.jar to compilation classpath.
17:28 Changeset [1343] by curtis
Set vertical padding to 70 instead of 30.
17:25 Changeset [1342] by curtis
Default 3D window size to most of the screen.
17:13 Changeset [1341] by curtis
Add lma.jar dependency to Slim Plotter.
17:05 Changeset [1340] by curtis
Add Java library for Levenberg-Marquardt curve fitting.
17:05 Changeset [1339] by curtis
Add setVisible API for use with SlimPlotter.
17:03 Changeset [1338] by curtis
Make launch script work if there are no arguments.
17:01 Changeset [1337] by curtis
Add basic curve fitting support; revamp the GUI somewhat.
17:01 Changeset [1336] by curtis
Add simple launcher script for easy testing.
13:54 Changeset [1335] by melissa
Removed debugging statements.
13:52 Changeset [1334] by melissa
Whitespace.
13:44 Changeset [1333] by melissa
Added a command line option to open a subset of the images: $ showinf …
13:22 Changeset [1332] by melissa
fixed Leica LIF bugs
12:52 Changeset [1331] by melissa
* removed unnecessary import from BaseTiffReader * fixed color map bug in …
10:21 Changeset [1330] by melissa
display a better error message if an invalid file pattern is found
10:16 Changeset [1329] by melissa
* fixed NullPointerException when reading metadata from stitched/merged …
08:18 Changeset [1328] by melissa
fixed importer plugin to handle stacks with mismatched dimensions
08:16 Changeset [1327] by melissa
added methods to ImageTools to pad images to a specified width and height
08:15 Changeset [1326] by melissa
bugfixes

08/22/06:

20:22 Changeset [1325] by chris
NotePane (NEW): 1) handles the list of Notes function 2) also handles the …
14:01 Changeset [1324] by melissa
fixed exception when opening palette color TIFFs
13:13 Changeset [1323] by curtis
Update path to SlimPlotter application.
11:19 Changeset [1322] by melissa
Added logic to handle 32-bit TIFFs; updated todo list.
10:52 Changeset [1321] by callan
Fix off by one in secondary IFD construction loop.
10:29 Changeset [1320] by callan
Bug fixes: * BaseTiffReader and derivatives have a working openBytes() …

08/21/06:

17:51 Changeset [1319] by curtis
Add License to information about each JAR file.
16:45 Changeset [1318] by curtis
No need to ignore *.tar.gz.
16:42 Changeset [1317] by curtis
Move old tar.gz files into archive.
16:41 Changeset [1316] by curtis
Change "@" in email address to " at ".
16:32 Changeset [1315] by curtis
New version of "lite" VisAD with ucar.netcdf package.
16:28 Changeset [1314] by curtis
Access properties file as a file, not a resource.
16:27 Changeset [1313] by curtis
Add targets for VisBio source and docs; split properties into separate …
15:33 Changeset [1312] by curtis
Import TiffWriter from proper location.
15:15 Changeset [1311] by curtis
Remove obsolete VisUtil class.
15:12 Changeset [1310] by curtis
Add docs-visbio target for VisBio documentation; fix Notebook resources.
13:48 Changeset [1309] by curtis
Standardize case for GIF files.
12:49 Changeset [1308] by chris
Switch TemplateParser to use getResourceAsStream.
12:24 Changeset [1307] by curtis
Add floating point TIFF problem to list of things to fix.
11:10 Changeset [1306] by melissa
- added methods to ImageTools to pad images with 0's - fixed how …
11:09 Changeset [1305] by melissa
fixed data browser to set all images in a stack to the same width and …

08/18/06:

19:38 Changeset [1304] by curtis
Switch to visad-lite.jar from visad.jar (for clarity).
19:23 Changeset [1303] by curtis
Remove obsolete targets from Makefile (only "source" and "docs" remain).
18:40 Changeset [1302] by curtis
Clean up formatting and whitespace.
18:30 Changeset [1301] by curtis
Code cleanup (tabs, spaces, etc.).
16:38 Changeset [1300] by curtis
Remove obsolete CVS files.
16:38 Changeset [1299] by curtis
Update URL for Apple eAWT stub JAR.
16:37 Changeset [1298] by curtis
Remove obsolete CVS file.
16:02 Changeset [1297] by curtis
Add dist-slim target for building slim.zip releases.
15:58 Changeset [1296] by curtis
Remove obsolete build script for LOCI ImageJ plugins.
15:40 Changeset [1295] by curtis
Move wavelength scale bar to the other side of the graph.
13:28 Changeset [1294] by curtis
Whitespace and formatting.
12:58 Changeset [1293] by curtis
Limit VisBio distribution builds with hacked permissions to *nix only; …
12:27 Changeset [1292] by curtis
More hacks to avoid problems with disappearing file permissions.
12:26 Changeset [1291] by curtis
Insert dot into VisBio version string.

08/17/06:

20:49 Changeset [1290] by chris
VariableTextEditor (NEW): 1) an abstract super class for the TextComponent …
14:58 Changeset [1289] by curtis
Migrate VisBio distribution build system into build.xml.
12:51 Changeset [1288] by curtis
Remove obsolete libraries from System Information window.
12:51 Changeset [1287] by curtis
Eliminate obsolete license.
12:11 Changeset [1286] by curtis
Add Samples folder to ignore list.
12:10 Changeset [1285] by curtis
Eliminate empty Samples folder.
11:57 Changeset [1284] by curtis
Eliminate "LOCI common classes" package.
09:35 Changeset [1283] by callan
Added Plane2D functionality to aid in the calculation of min/max values …
06:35 Changeset [1282] by callan
Bug fixes: * Separated TIFF fixes to allow proper usage of getSizeT and …

08/16/06:

23:13 Changeset [1281] by curtis
Fix main class for bio-formats.jar.
23:02 Changeset [1280] by curtis
Fix up jar-formats, jar-leica, jar-qt and jar-slim targets.
22:21 Changeset [1279] by curtis
Add VisAD JAR file.
19:24 Changeset [1278] by chris
GotoRenderer.java: 1) changes for better performance based on suggestions …
17:17 Changeset [1277] by curtis
Initial version of master ant build file. Some targets are not yet …
17:15 Changeset [1276] by curtis
Move loci.leica, loci.qt and loci.slim packages into subpackages of …
16:21 Changeset [1275] by curtis
Update copyright blurbs.
16:04 Changeset [1274] by curtis
Add information about Bio-Formats Importer and Exporter to About dialog.
16:02 Changeset [1273] by curtis
Finish move of loci.ome.ij package to loci.plugins.ome.
15:56 Changeset [1272] by curtis
Begin move of loci.ome.ij package to loci.plugins.ome.
15:54 Changeset [1271] by curtis
Finish move of loci.browser to loci.plugins.browser.
15:52 Changeset [1270] by curtis
Begin move of loci.browser package to loci.plugins.browser.
15:06 Changeset [1269] by curtis
Don't use obsolete loci.util.About for Help/About menu anymore.
15:04 Changeset [1268] by curtis
Move about dialog into MetadataNotebook Help/About menu; eliminate jikes …
14:56 Changeset [1267] by curtis
Update About dialog boxes to reflect new JAR package structure.
14:55 Changeset [1266] by curtis
Change hardcoded 2006 copyright into @year@ placeholder.
14:14 Changeset [1265] by curtis
Add option to toggle bounding box on and off.
13:49 Changeset [1264] by curtis
Change copyright blurb to use @year@ variable instead of hardcoded 2006.
13:31 Changeset [1263] by curtis
Move tar.gz archives of old code to root folder.
11:31 Changeset [1262] by curtis
Add copyright blurb.
11:30 Changeset [1261] by curtis
Add copyright blurb.
11:20 Changeset [1260] by curtis
Add copyright blurb.
11:16 Changeset [1259] by curtis
Add little permission blurbs to lesser apps.
11:14 Changeset [1258] by curtis
Add copyright blurb to OME Plugin for ImageJ; eliminate obsolete joint …
11:01 Changeset [1257] by curtis
Remove copyright blurb.
11:01 Changeset [1256] by curtis
Add copyright blurb.
10:59 Changeset [1255] by curtis
Move ImageJ plugins from Bio-Formats to Data Browser package. This …
10:55 Changeset [1254] by curtis
Remove manifest (that information is now part of ant build script).

08/15/06:

20:31 Changeset [1253] by chris
MetadataNotebook: 1) saveFile method now just calls the MetadataPane …
16:11 Changeset [1252] by curtis
Move MetaPanel and XMLObject into loci/ome/ij, since nothing else uses …
12:51 Changeset [1251] by curtis
Use placeholder variables for VERSION and DATE.
12:49 Changeset [1250] by curtis
Eliminate deprecation warnings (usage of show and hide).
12:42 Changeset [1249] by curtis
Eliminate warnings about varargs calls in Java 1.5.
11:42 Changeset [1248] by curtis
Add external JAR libraries to version control.

08/14/06:

15:00 Changeset [1247] by curtis
Remove JQD stuff.
14:20 Changeset [1246] by curtis
Add note to test Matthias's Leica SP5 data.
12:08 Changeset [1245] by curtis
Utility for determining if a directory structure is older than a certain …

08/11/06:

13:49 Changeset [1244] by melissa
removed debug statements
13:42 Changeset [1243] by melissa
minor bugfix
13:33 Changeset [1242] by melissa
* fixed jikes warnings * fixed Leica LIF bugs * tweaked FormatReader
13:10 Changeset [1241] by melissa
fixed Data Browser to work with new Bio-Formats API
12:54 Changeset [1240] by callan
Bug fixes: * Recognize ColorMaps that only exist in the first IFD * Proper …

08/10/06:

17:00 Changeset [1239] by curtis
Target 1.4 version of Java.
15:29 Changeset [1238] by curtis
Update version to v3.30.
13:57 Changeset [1237] by curtis
Better spacing.
13:51 Changeset [1236] by curtis
Add option to specify maximum character to list in the table; default …
13:49 Changeset [1235] by curtis
Get rid of direct uses of unmappable micron character.
13:32 Changeset [1234] by curtis
Make channel merger optional with -merge option (default off).
13:04 Changeset [1233] by curtis
Add getIndex and getZCTCoords methods for converting between rasterized …
11:33 Changeset [1232] by curtis
Remove duplicate setSeparated implementation; reorganize code a little.
11:23 Changeset [1231] by melissa
updated Data Browser (better support for virtual stacks)

08/09/06:

15:09 Changeset [1230] by curtis
Standardize DICOM filter (so it doesn't get duplicated).
13:28 Changeset [1229] by melissa
fixed inconsistency in BMPReader.getSizeX(String)
10:54 Changeset [1228] by melissa
fixed stupid bug in OIFReader
10:40 Changeset [1227] by melissa
fixed a bug in FileStitcher
Note: See TracTimeline for information about the timeline view.