Timeline


and

09/22/06:

17:25 Changeset [1496] by chris
Browser: 1) complete revamp (from tabula rasa) of cachemanager. Seems to …
17:25 Changeset [1495] by curtis
Add poi-loci.jar dependency for Bio-Formats.
17:25 Changeset [1494] by curtis
Whitespace.
17:22 Changeset [1493] by curtis
Rename poi-current.jar to poi-loci.jar, for clarity.
17:02 Changeset [1492] by curtis
On-the-fly Look & Feel changes; fix some layout bugs
16:24 Changeset [1491] by curtis
Use cheesy logic to switch look and feel to the "system" L&F just before …
15:30 Changeset [1490] by curtis
Fix bug with image viewer when isRGB == true.
15:03 Changeset [1489] by curtis
Use @year@ tag for shell scripts.
15:02 Changeset [1488] by curtis
Clean up method ordering and section labels.
13:23 Changeset [1487] by curtis
Whitespace.
11:30 Changeset [1486] by melissa
fixed each reader to populate MetadataStore's PixelSize fields
10:10 Changeset [1485] by melissa
tweaked EPSReader.openBytes for efficiency
10:03 Changeset [1484] by melissa
- fixed a bug in RandomAccessStream - removed LegacyGIFReader - fixed IPW …

09/21/06:

15:01 Changeset [1483] by curtis
Read in more SDT metadata; more efficient openBytes method.
14:46 Changeset [1482] by curtis
Change report of RGB status: if merge flag is set, append "(merged)" or if …
14:41 Changeset [1481] by melissa
updated todo list
14:40 Changeset [1480] by melissa
added support for PerkinElmer Ultraview files
14:19 Changeset [1479] by melissa
removed old OLE parsing classes
13:42 Changeset [1478] by melissa
- changed OIBReader to use POI - tweaked RandomAccessStream to support …

09/20/06:

17:42 Changeset [1477] by callan
New features: * openBytes() method which supports pre-allocated byte …
12:11 Changeset [1476] by melissa
removed boolean parameter from getZCTCoords and getIndex
11:55 Changeset [1475] by melissa
- added API method "void swapDimensions(String, String)" to FormatReader - …
08:52 Changeset [1474] by melissa
added logic to LIFReader to check the physical orientation of each series, …

09/19/06:

17:21 Changeset [1473] by curtis
Fix copyright notices for Greg's freeform classes.
15:21 Changeset [1472] by sorber
Whitespace.
14:52 Changeset [1471] by curtis
Update hack for handling both "XZ" case and (theoretical) "YZ" case.
14:11 Changeset [1470] by curtis
The getMetadataValue and getMetadata methods should call initFile if the …
10:31 Changeset [1469] by curtis
Handle weird case where height is missing (DimID == 2), but instead seems …
10:22 Changeset [1468] by curtis
Simple utility for pretty printing XML (does not handle CDATA properly).
10:02 Changeset [1467] by curtis
Add a check for existing width, height and bps tags for each series.

09/18/06:

12:31 Changeset [1466] by melissa
* updated ZVI reader to use patched POI jar * fixed minor bugs in …
10:35 Changeset [1465] by melissa
recompiled with explicit "-target 1.4 -source 1.4"
10:28 Changeset [1464] by melissa
added patched POI jar

09/15/06:

10:03 Changeset [1463] by curtis
Fix HandleExtraFileTypes to work again (broke when LociImporter was moved …

09/14/06:

08:12 Changeset [1462] by melissa
fixed bug in Zeiss LSM reader

09/13/06:

15:53 Changeset [1461] by curtis
Whitespace.
13:40 Changeset [1460] by curtis
No need to catch MetadataStoreException anymore.
08:56 Changeset [1459] by melissa
Save LociImporter preferences in IJ_Prefs.txt
08:43 Changeset [1458] by melissa
added support for Openlab LIFF 5

09/11/06:

17:12 Changeset [1457] by chris
browser: 1) Swapping should work as designed now, including with the …
16:20 Changeset [1456] by curtis
Fix bug in ZCT->index slider conversion.
11:04 Changeset [1455] by chris
Browser: 1) changes to prevent two axes being the same.
09:55 Changeset [1454] by melissa
fixed channel detection bug in Leica LIF reader
09:43 Changeset [1453] by melissa
Added ChannelSeparator.
09:42 Changeset [1452] by melissa
- Changed channel separation API; "void setSeparated(boolean)" and …

09/08/06:

17:09 Changeset [1451] by curtis
Read in SDT file header, info and setup values. Doesn't do anything with …
17:08 Changeset [1450] by curtis
Whitespace.
15:16 Changeset [1449] by curtis
Use imp instead of ip for ImagePlus objects (ip is used for …
15:15 Changeset [1448] by curtis
Add Zeiss MDB to the list.
12:06 Changeset [1447] by melissa
fixed MetadataStore issues in OMEXMLReader
09:56 Changeset [1446] by melissa
fixed brain-damaged logic in FileStitcher
09:35 Changeset [1445] by melissa
fixed compiler error in line 157 of OptionsWindow
09:07 Changeset [1444] by melissa
fixed major bug in Leica LIF reader

09/07/06:

17:21 Changeset [1443] by chris
Notebook: 1) Slight changes to avoid parsing strings in my code whenever …
14:42 Changeset [1442] by melissa
fixed Gatan bug
14:17 Changeset [1441] by melissa
fixed channel detection in LSM reader
13:56 Changeset [1440] by melissa
- fixed bug in DataTools.stripString - added LZO support to Compression - …
13:19 Changeset [1439] by curtis
Correct Javadoc typo.
12:55 Changeset [1438] by curtis
Use LookUtils.IS_OS_* instead of System.getProperty("os.name") when …
12:39 Changeset [1437] by curtis
Note that importer is for reading files. =)
11:12 Changeset [1436] by curtis
Add UltraView ERS and SlideBook to list of formats.
09:57 Changeset [1435] by curtis
Print more information about the command line options.
09:57 Changeset [1434] by curtis
Tweak.
09:22 Changeset [1433] by curtis
OMG, you just use "$@" instead of $*.
09:14 Changeset [1432] by curtis
Turn on indentation check, fix a few style issues in VisBio.

09/06/06:

17:39 Changeset [1431] by curtis
Whitespace.
17:13 Changeset [1430] by curtis
Fix NullPointerException when no arguments are given.
16:16 Changeset [1429] by chris
MetadataPane: 1) Quick reversion to old way of saving
16:14 Changeset [1428] by chris
CustomWindow: 1) Commented out wierd array manipulation that's totally …
15:53 Changeset [1427] by curtis
Eliminate jikes warnings.
15:51 Changeset [1426] by curtis
No more need for loci.ome.viewer with loci_plugins.jar.
15:50 Changeset [1425] by curtis
Wrap references to OME Notebook in reflection, so that the Data Browser …
15:23 Changeset [1424] by curtis
Fix problem with multiple command line arguments (breaks files with spaces …
15:17 Changeset [1423] by curtis
More tweaks to range selector.
15:11 Changeset [1422] by curtis
Add error checking for user-specified ranges; more accurate progress bar.
15:02 Changeset [1421] by curtis
Add option to select a range for each imported series.
15:01 Changeset [1420] by curtis
Style and other code fixes.
11:43 Changeset [1419] by chris
Browser: 1) made MetadataNotebook the new way to edit/view metadata when …
11:19 Changeset [1418] by melissa
added multi-series support for Leica LEI; fixed issue with spaces in …
10:22 Changeset [1417] by melissa
bugfixes in FileStitcher
09:59 Changeset [1416] by curtis
Add Z, T and C sliders to image viewer, for interactive testing of …

09/05/06:

15:41 Changeset [1415] by curtis
Fix Openlab bugs causing slow initialization and slow isRGB.
15:22 Changeset [1414] by curtis
Prepend "LOCI Bio-Formats: " to elapsed time for single image.
13:57 Changeset [1413] by curtis
Add checks for GenericDialog cancelation.
11:13 Changeset [1412] by curtis
Set debug flag to true, to preserve line numbers for stack traces.
11:12 Changeset [1411] by curtis
Do not show metadata by default.
11:12 Changeset [1410] by curtis
Quote $* variable to handle filenames with spaces.
10:38 Changeset [1409] by curtis
More tweaking around with file filters, for speed and accuracy. Now "All …

09/01/06:

17:32 Changeset [1408] by curtis
Make ImageReader's file filters also call isThisType(id, false). This …
16:21 Changeset [1407] by curtis
Fix weird NullPointerException in checkEfficiency.
15:23 Changeset [1406] by curtis
Add isThisType(String id, boolean open) method to FormatHandler API for …
14:46 Changeset [1405] by curtis
Print series dimensions (SizeX x SizeY x ImageCount) in the chooser; some …
12:00 Changeset [1404] by melissa
removed debugging statement from GIF reader
09:50 Changeset [1403] by melissa
Credited ImageJ plugin in comments.
09:31 Changeset [1402] by melissa
bugfixes

08/31/06:

16:03 Changeset [1401] by curtis
More style fixes.
14:58 Changeset [1400] by curtis
Be more liberal about terminating the IFD read loop when the offset is …
13:53 Changeset [1399] by curtis
Update testRead to print basic information about all series within the …
13:15 Changeset [1398] by melissa
* fixed a bug in Zeiss LSM reader * added thumbnail support to OIF reader
13:02 Changeset [1397] by melissa
added thumbnail support to Zeiss LSM reader
12:51 Changeset [1396] by melissa
updated TODO list
12:50 Changeset [1395] by melissa
fixed a bug in LIFReader
12:01 Changeset [1394] by melissa
added support for multi-series files to Data Browser
11:27 Changeset [1393] by melissa
added support for multiple series to OME-XML reader
11:16 Changeset [1392] by curtis
Change class comment to say "LegacyGIFReader."
08:10 Changeset [1391] by melissa
Modified GIF reader to open animated GIFs; defaults to ImageIO reader if …

08/30/06:

17:40 Changeset [1390] by curtis
Clean up some style issues in VisBio.
17:04 Changeset [1389] by curtis
Clean up style issues in Bio-Formats.
14:59 Changeset [1388] by curtis
Some work on style checking targets; fix some style issues.
13:25 Changeset [1387] by curtis
Add JPEG-2000 to the list of formats for eventual addition.
13:10 Changeset [1386] by melissa
* added API methods for retrieving thumbnails: - BufferedImage …
08:39 Changeset [1385] by melissa
* fixed a bug in how Zeiss LSM files are handled by TiffTools (files in …

08/29/06:

15:30 Changeset [1384] by greg
Initial version of freeform line overlay type.
15:20 Changeset [1383] by curtis
Cannot use Windows look and feel on non-Windows OSes.
15:15 Changeset [1382] by curtis
Fix some bugs in OME-XML output generation.
14:05 Changeset [1381] by curtis
Correct noeol at eof.
14:03 Changeset [1380] by curtis
Add package descriptions for the remaining packages.
13:59 Changeset [1379] by curtis
Slightly better guess for two-exponential function. But doesn't work.
13:21 Changeset [1378] by curtis
Add compile targets to build each package separately. Add target to check …
13:19 Changeset [1377] by curtis
Make some fields private.
13:15 Changeset [1376] by melissa
* moved OMEUpload to loci.formats * added API methods for switching …
12:55 Changeset [1375] by curtis
Fix compile error.
12:25 Changeset [1374] by curtis
Update todo list with API for multiple series and thumbnails.
11:05 Changeset [1373] by melissa
Added preliminary version of OME uploader to loci.ome package (can be …

08/28/06:

15:45 Changeset [1372] by curtis
Add (commented out) support for multiple exponentials.
15:22 Changeset [1371] by chris
slight changes to make javadoc better.
15:12 Changeset [1370] by chris
I'm satisfied that this program is now fairly robust. I've added javadoc …
14:46 Changeset [1369] by curtis
Larger scale bar font; minimum width for log window and intensity frame.
13:30 Changeset [1368] by curtis
Only set default directory to match ImageJ if it is not null.
11:05 Changeset [1367] by melissa
tweaked Leica LIF dimension detection

08/25/06:

16:18 Changeset [1366] by curtis
Trim down VisBio file formats documentation.
15:51 Changeset [1365] by curtis
Set default file chooser directory to match the rest of ImageJ.
15:37 Changeset [1364] by curtis
Use RandomAccessStream for isThisType(String) delving into file, instead …
15:21 Changeset [1363] by curtis
Fix bug where isThisType(byte[]) would identify any file starting with II …
15:16 Changeset [1362] by curtis
Tweaks.
15:16 Changeset [1361] by curtis
Use DataInputStream.readFully instead of looped read, for simplicity (no …
15:07 Changeset [1360] by curtis
Change UnsupportedMetadataStoreException to MetadataStoreException.
13:57 Changeset [1359] by curtis
List ome-java.jar as a dependency of Bio-Formats.
13:14 Changeset [1358] by curtis
Eliminate jikes warnings due to shadowed "store" field.
13:10 Changeset [1357] by curtis
Change UnsupportedMetadataStoreException to somewhat more general (and …
12:46 Changeset [1356] by curtis
Add simple metadata view option to Bio-Formats Importer plugin (just what …
12:14 Changeset [1355] by curtis
Remove comment about HandleExtraFileTypes, since we have our own version …
08:48 Changeset [1354] by melissa
fixed OME-Java dependency in LociImporter

08/24/06:

17:00 Changeset [1353] by curtis
Fix typo in variable.
15:51 Changeset [1352] by curtis
Comment out setGlobalChannelMinMax for now, since it is incredibly slow.
15:31 Changeset [1351] by curtis
Package descriptions for many packages.
15:02 Changeset [1350] by curtis
Must include Jama with LMA library.
14:58 Changeset [1349] by curtis
Version of LMA compiled with -target 1.4 -source 1.4.
12:47 Changeset [1348] by curtis
Improve curve fitting functionality.
10:43 Changeset [1347] by curtis
Eliminate silly centering behavior.
10:24 Changeset [1346] by melissa
* fixed OME plugin * tweaked Data Browser to be compatible with OME plugin …

08/23/06:

21:01 Changeset [1345] by chris
NotePane: 1) minor changes to make the new Tools>Export Notes menu item …
17:30 Changeset [1344] by curtis
Add lma.jar to compilation classpath.
17:28 Changeset [1343] by curtis
Set vertical padding to 70 instead of 30.
17:25 Changeset [1342] by curtis
Default 3D window size to most of the screen.
17:13 Changeset [1341] by curtis
Add lma.jar dependency to Slim Plotter.
17:05 Changeset [1340] by curtis
Add Java library for Levenberg-Marquardt curve fitting.
17:05 Changeset [1339] by curtis
Add setVisible API for use with SlimPlotter.
17:03 Changeset [1338] by curtis
Make launch script work if there are no arguments.
17:01 Changeset [1337] by curtis
Add basic curve fitting support; revamp the GUI somewhat.
17:01 Changeset [1336] by curtis
Add simple launcher script for easy testing.
13:54 Changeset [1335] by melissa
Removed debugging statements.
13:52 Changeset [1334] by melissa
Whitespace.
13:44 Changeset [1333] by melissa
Added a command line option to open a subset of the images: $ showinf …
13:22 Changeset [1332] by melissa
fixed Leica LIF bugs
12:52 Changeset [1331] by melissa
* removed unnecessary import from BaseTiffReader * fixed color map bug in …
10:21 Changeset [1330] by melissa
display a better error message if an invalid file pattern is found
10:16 Changeset [1329] by melissa
* fixed NullPointerException when reading metadata from stitched/merged …
08:18 Changeset [1328] by melissa
fixed importer plugin to handle stacks with mismatched dimensions
08:16 Changeset [1327] by melissa
added methods to ImageTools to pad images to a specified width and height
08:15 Changeset [1326] by melissa
bugfixes
Note: See TracTimeline for information about the timeline view.