Timeline


and

10/10/06:

16:22 Changeset [1602] by curtis
Rely on external jars for MovieStitcher.jar, instead of bundling …
16:21 Changeset [1601] by curtis
Allow any format of input movies (instead of just QuickTime and TIFF).
15:27 Changeset [1600] by curtis
Fix MovieStitcher targets; eliminate some hardcoding from build.xml.
15:23 Changeset [1599] by curtis
Tweak application description.
14:55 Changeset [1598] by curtis
Add FileStitcher constructor signature allowing ids to be patterns rather …
14:27 Changeset [1597] by curtis
Eliminate jikes warning.
12:59 Changeset [1596] by melissa
Fixed reported issue with opening ZVI files in ImageJ. This includes …
12:24 Changeset [1595] by curtis
Update build rules to reflect loci.apps.qt -> loci.apps.stitcher change.
12:17 Changeset [1594] by curtis
Rename QT Converter to Movie Stitcher to reflect an increase in …
12:16 Changeset [1593] by curtis
Move loci.apps.qt package to loci.apps.stitcher in anticipation of name …

10/09/06:

16:53 Changeset [1592] by sorber
A variety of changes to OverlayObject, OverlayFreeform, & FreeformTool to …
15:04 Changeset [1591] by curtis
Add support for fill option for freeform lines.
09:35 Changeset [1590] by curtis
Remove debugging statement.
09:21 Changeset [1589] by melissa
- Close files in LeicaReader.openBytes and LeicaReader.openImage - …

10/06/06:

15:53 Changeset [1588] by curtis
Fix ClassCastException in FileStitcher.
12:07 Changeset [1587] by curtis
Latest ImageJ/HandleExtraFileTypes/Bio-Formats integration from Wayne.
08:33 Changeset [1586] by melissa
Fixed ImageJ importer to work with files in data/fv1000/marc.

10/05/06:

14:47 Changeset [1585] by melissa
Made a slight change to ImageJ plugin that should free up some memory. …
08:53 Changeset [1584] by melissa
Temporarily reverted NikonReader.
08:50 Changeset [1583] by melissa
Pad thumbnails to 128x128 by default.
08:49 Changeset [1582] by melissa
Fixed bugs in thumbnail creation.

10/04/06:

17:30 Changeset [1581] by curtis
Comment out calls to getChannelGlobal methods for now.
17:29 Changeset [1580] by curtis
Tweaks.
17:29 Changeset [1579] by curtis
Fix bug in global minimum and maximum assignment.
14:41 Changeset [1578] by curtis
Support for canceled flag with HandleExtraFileTypes to detect if user …
14:40 Changeset [1577] by curtis
Little utility for combining TIFFs (workaround for WiscScan bug + crash).
14:27 Changeset [1576] by melissa
- Removed getChannelGlobalMinimum and getChannelGlobalMaximum from …
11:36 Changeset [1575] by melissa
Fixed a critical bug in ZeissZVIReader.
11:27 Changeset [1574] by melissa
- Removed autoscaling logic from ChannelMerger. - Moved scanData method …
11:23 Changeset [1573] by melissa
- Override getChannelGlobalMinimum and getChannelGlobalMaximum where …
09:45 Changeset [1572] by curtis
Eliminate jikes warnings; whitespace.
09:34 Changeset [1571] by curtis
No need to catch FormatException upon FileStitcher construction anymore.
09:31 Changeset [1570] by curtis
Fix separate reader per file option.
09:24 Changeset [1569] by curtis
Remove needless FormatException from ReaderWrapper and subclass …
09:14 Changeset [1568] by curtis
No need for true flag for FileStitcher construction in testRead.
09:10 Changeset [1567] by melissa
Default to using multiple readers in FileStitcher.

10/03/06:

16:49 Changeset [1566] by chris
browser: 1) CROSS_MODE entirely implemented for all combinations of axes …
14:41 Changeset [1565] by curtis
Fix compile error.
13:39 Changeset [1564] by melissa
Added logic to FileStitcher that allows one reader per file. Changed …
12:42 Changeset [1563] by melissa
Tweaked FormatReader.openThumbImage
12:41 Changeset [1562] by melissa
Changed signature of ImageTools.scale to "void scale(BufferedImage, int, …
12:18 Changeset [1561] by melissa
Fixed dimension order in ChannelSeparator; fixed pixel type in …
12:00 Changeset [1560] by melissa
Fixed a bug in BaseTiffReader - openBytes didn't properly handle multiple …
12:00 Changeset [1559] by melissa
- Fixed native QuickTime reader to handle random access of RLE planes. - …
11:59 Changeset [1558] by curtis
Synchronize every call to the same format reader object.
11:16 Changeset [1557] by curtis
Do some array wrapping, and ignore LITTLE_ENDIAN fake IFD tag, when …
11:09 Changeset [1556] by melissa
Fixed ClassCastException in ChannelSeparator; dimension order is still …
00:26 Changeset [1555] by curtis
Add -thumbs option to read thumbnails instead of full size pixels.
00:07 Changeset [1554] by curtis
Fix bug with ImagePlus object having no corresponding ImageStack, …

10/02/06:

18:06 Changeset [1553] by curtis
Cut down on new instances of ImageReader; close files after reading.
17:34 Changeset [1552] by chris
Browser: 1) comments added 2) ImagePlus is no longer a stack, so there's …
13:28 Changeset [1551] by chris
CacheManager: 1) getMix() method fixed so that SURROUND_FIRST mode …
12:17 Changeset [1550] by melissa
Fixed "open channels in separate windows" option in ImageJ plugin (for …
09:57 Changeset [1549] by curtis
Add default constructor around a new ImageReader.
09:50 Changeset [1548] by melissa
Fixed native ZVI reader to delegate properly if a POI-related error …
08:52 Changeset [1547] by melissa
Fixed outstanding bugs in LeicaReader. Also fixed a bug in the import …
08:03 Changeset [1546] by melissa
Fixed PICT reader to play nicely with ImageJ. New PICT file works now.
07:51 Changeset [1545] by melissa
Improved memory usage in POI-based readers.

09/29/06:

16:58 Changeset [1544] by curtis
Add library check for forms-1.0.4.jar; use BoxLayout for exporter plugin.
16:17 Changeset [1543] by melissa
Close files in PerkinElmer reader.
16:11 Changeset [1542] by curtis
Add core metadata (SizeX/Y/Z/C/T, IsRGB, etc.) to metadata table window.
16:10 Changeset [1541] by curtis
Add static getPixelTypeString method for converting from pixel type …
15:54 Changeset [1540] by curtis
Default merge to off, split windows to true.
15:48 Changeset [1539] by curtis
Fix calibration if values are not found.
15:43 Changeset [1538] by curtis
SDT reader works.
14:58 Changeset [1537] by melissa
Force Perkin-Elmer files to be ordered numerically rather than …
14:45 Changeset [1536] by curtis
Whitespace.
13:01 Changeset [1535] by curtis
ZVI files must end in .zvi, because otherwise related OLE-based formats …
12:39 Changeset [1534] by curtis
Tweak documentation.
11:42 Changeset [1533] by melissa
- Finally added support for 16-bit palette color TIFFs. - End of line …
10:31 Changeset [1532] by melissa
Fixed option to open channels in separate windows.
10:16 Changeset [1531] by melissa
Use IFormatReader objects instead of FormatReader objects.
10:15 Changeset [1530] by melissa
Changed ChannelSeparator and FileStitcher to use new ReaderWrapper class. …
10:08 Changeset [1529] by melissa
fixed LeicaReader.isThisType(String, boolean) to fail more quickly if the …
09:03 Changeset [1528] by melissa
fixed ChannelMerger bug

09/28/06:

18:44 Changeset [1527] by curtis
New ChannelMerger that extends ReaderWrapper. Still has bugs.
18:09 Changeset [1526] by curtis
Fix Wayne's issue with Bio-Formats and HandleExtraFileTypes; clean up …
11:25 Changeset [1525] by melissa
fixed Metamorph bug
11:00 Changeset [1524] by curtis
Move ZVI and OIB back to "POI readers" section.
08:36 Changeset [1523] by melissa
Fixed ChannelSeparator to override initFile(String).
08:25 Changeset [1522] by melissa
removed debugging statements
08:24 Changeset [1521] by melissa
- fixed dimension ordering in SEQ and IPW readers - fixed dimension …

09/27/06:

14:24 Changeset [1520] by melissa
fixed calibration error in LIFReader
14:10 Changeset [1519] by melissa
Added preliminary support for Slidebook files.
10:25 Changeset [1518] by curtis
Add Christopher Peterson to credits in loci_formats.jar About dialog box.
10:08 Changeset [1517] by curtis
Change pixel types to lower case.
09:05 Changeset [1516] by melissa
make sure POI-based readers close their RandomAccessStreams
08:26 Changeset [1515] by melissa
- fixed pixelType population in OpenlabReader - tweaked metadata parsing …

09/26/06:

11:30 Changeset [1514] by melissa
fixed OpenlabReader's pixel types
09:37 Changeset [1513] by callan
Basic bug fixes to the min/max calculation code.

09/25/06:

17:28 Changeset [1512] by curtis
Style fixes.
17:13 Changeset [1511] by curtis
Style fixes.
16:26 Changeset [1510] by curtis
Add descriptions for distribution bundle targets.
16:17 Changeset [1509] by curtis
Tweak OME Plugin library detection.
16:12 Changeset [1508] by curtis
Fix library checks for Data Browser.
16:05 Changeset [1507] by curtis
Fix EOL spaces.
16:03 Changeset [1506] by curtis
Whitespace and style fixes.
15:28 Changeset [1505] by curtis
Fix EOL spaces.
15:28 Changeset [1504] by curtis
Whitespace.
15:26 Changeset [1503] by curtis
Strip out core LOCI importer and exporter logic into Importer and Exporter …
12:15 Changeset [1502] by melissa
- fixed off-by-one error in Metamorph's IFD parsing; slightly improved …
11:25 Changeset [1501] by melissa
- ignore LUT data in OIBReader
10:49 Changeset [1500] by melissa
- fixed dimension order bug in PerkinElmerReader - tweaked series …
10:33 Changeset [1499] by curtis
Make "jars" the default build operation.
10:32 Changeset [1498] by curtis
Add checks for missing libraries to LOCI plugins.
09:58 Changeset [1497] by curtis
Change getIndex calls in browser to new API (no more boolean parameter …

09/22/06:

17:25 Changeset [1496] by chris
Browser: 1) complete revamp (from tabula rasa) of cachemanager. Seems to …
17:25 Changeset [1495] by curtis
Add poi-loci.jar dependency for Bio-Formats.
17:25 Changeset [1494] by curtis
Whitespace.
17:22 Changeset [1493] by curtis
Rename poi-current.jar to poi-loci.jar, for clarity.
17:02 Changeset [1492] by curtis
On-the-fly Look & Feel changes; fix some layout bugs
16:24 Changeset [1491] by curtis
Use cheesy logic to switch look and feel to the "system" L&F just before …
15:30 Changeset [1490] by curtis
Fix bug with image viewer when isRGB == true.
15:03 Changeset [1489] by curtis
Use @year@ tag for shell scripts.
15:02 Changeset [1488] by curtis
Clean up method ordering and section labels.
13:23 Changeset [1487] by curtis
Whitespace.
11:30 Changeset [1486] by melissa
fixed each reader to populate MetadataStore's PixelSize fields
10:10 Changeset [1485] by melissa
tweaked EPSReader.openBytes for efficiency
10:03 Changeset [1484] by melissa
- fixed a bug in RandomAccessStream - removed LegacyGIFReader - fixed IPW …

09/21/06:

15:01 Changeset [1483] by curtis
Read in more SDT metadata; more efficient openBytes method.
14:46 Changeset [1482] by curtis
Change report of RGB status: if merge flag is set, append "(merged)" or if …
14:41 Changeset [1481] by melissa
updated todo list
14:40 Changeset [1480] by melissa
added support for PerkinElmer Ultraview files
14:19 Changeset [1479] by melissa
removed old OLE parsing classes
13:42 Changeset [1478] by melissa
- changed OIBReader to use POI - tweaked RandomAccessStream to support …

09/20/06:

17:42 Changeset [1477] by callan
New features: * openBytes() method which supports pre-allocated byte …
12:11 Changeset [1476] by melissa
removed boolean parameter from getZCTCoords and getIndex
11:55 Changeset [1475] by melissa
- added API method "void swapDimensions(String, String)" to FormatReader - …
08:52 Changeset [1474] by melissa
added logic to LIFReader to check the physical orientation of each series, …

09/19/06:

17:21 Changeset [1473] by curtis
Fix copyright notices for Greg's freeform classes.
15:21 Changeset [1472] by sorber
Whitespace.
14:52 Changeset [1471] by curtis
Update hack for handling both "XZ" case and (theoretical) "YZ" case.
14:11 Changeset [1470] by curtis
The getMetadataValue and getMetadata methods should call initFile if the …
10:31 Changeset [1469] by curtis
Handle weird case where height is missing (DimID == 2), but instead seems …
10:22 Changeset [1468] by curtis
Simple utility for pretty printing XML (does not handle CDATA properly).
10:02 Changeset [1467] by curtis
Add a check for existing width, height and bps tags for each series.

09/18/06:

12:31 Changeset [1466] by melissa
* updated ZVI reader to use patched POI jar * fixed minor bugs in …
10:35 Changeset [1465] by melissa
recompiled with explicit "-target 1.4 -source 1.4"
10:28 Changeset [1464] by melissa
added patched POI jar

09/15/06:

10:03 Changeset [1463] by curtis
Fix HandleExtraFileTypes to work again (broke when LociImporter was moved …

09/14/06:

08:12 Changeset [1462] by melissa
fixed bug in Zeiss LSM reader

09/13/06:

15:53 Changeset [1461] by curtis
Whitespace.
13:40 Changeset [1460] by curtis
No need to catch MetadataStoreException anymore.
08:56 Changeset [1459] by melissa
Save LociImporter preferences in IJ_Prefs.txt
08:43 Changeset [1458] by melissa
added support for Openlab LIFF 5

09/11/06:

17:12 Changeset [1457] by chris
browser: 1) Swapping should work as designed now, including with the …
16:20 Changeset [1456] by curtis
Fix bug in ZCT->index slider conversion.
11:04 Changeset [1455] by chris
Browser: 1) changes to prevent two axes being the same.
09:55 Changeset [1454] by melissa
fixed channel detection bug in Leica LIF reader
09:43 Changeset [1453] by melissa
Added ChannelSeparator.
09:42 Changeset [1452] by melissa
- Changed channel separation API; "void setSeparated(boolean)" and …
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