Timeline


and

11/17/06:

16:50 Changeset [1825] by curtis
Whitespace.
16:37 Changeset [1824] by curtis
Automatically set CreationDate attribute to default value (now).
16:27 Changeset [1823] by curtis
Output OME-XML to stderr if debug flag is set.
16:11 Changeset [1822] by melissa
Fixed pixel type mismatches in OME-TIFF files.
16:04 Changeset [1821] by curtis
Assign first Pixels object as default for its Image.
15:06 Changeset [1820] by curtis
Tweaks.
15:05 Changeset [1819] by curtis
Fix bugs in some OME-XML metadata setter methods.
14:54 Changeset [1818] by curtis
Be more thorough when checking Bio-Rad <2-3> special case.
12:04 Changeset [1817] by melissa
Set number of valid bits in OIB and OIF readers.
11:35 Changeset [1816] by melissa
Don't normalize floating point data.
11:08 Changeset [1815] by curtis
Whitespace.
11:07 Changeset [1814] by curtis
Whitespace.
11:05 Changeset [1813] by curtis
Change setIgnoreColorTable to setColorTableIgnored.
11:05 Changeset [1812] by curtis
Change method names to better match Java convention: * getNormalize -> …
10:58 Changeset [1811] by curtis
Also create only one blank bytes array, similar to blank image logic, for …
10:55 Changeset [1810] by curtis
* Add getIgnoreColorTable method, to match setIgnoreColorTable. * Remove a …
10:28 Changeset [1809] by curtis
Whitespace.
10:28 Changeset [1808] by curtis
Tweak pixel type DataBuffer assignments.
10:01 Changeset [1807] by melissa
Updated importer to use openBytes instead of openImage.
09:06 Changeset [1806] by melissa
- Added command-line option to normalize floating point data. - Expanded …

11/16/06:

16:06 Changeset [1805] by curtis
Add getSuffix method for getting string after all numerical blocks.
15:54 Changeset [1804] by curtis
Fix bug causing initFile to be called repeatedly in some cases.
15:54 Changeset [1803] by curtis
Remove unnecessary variable.
15:41 Changeset [1802] by curtis
Implement swapDimensions for FileStitcher; implement initial API for …
14:23 Changeset [1801] by chris
Browser: 1) fixed channel changer gui and added changelistener so that the …
14:11 Changeset [1800] by curtis
Fix scroll bar issue with GenericDialogs.

11/15/06:

18:24 Changeset [1799] by chris
browser: 1) made color mixing work for large datasets where each pixel of …
16:37 Changeset [1798] by curtis
Revamped Bio-Formats Importer plugin to properly record parameters with …
15:41 Changeset [1797] by sorber
Added a curve length item to the statistics for OverlayFreeform. Deleted …
14:23 Changeset [1796] by sorber
FreeformTool now uses tendril-like editing.
14:22 Changeset [1795] by sorber
Added method getDistSegWt to MathUtil.java
10:15 Changeset [1794] by curtis
Add "About LOCI Plugins" to ImageJ properties file (used by ij-jws.jar).
10:07 Changeset [1793] by curtis
Propagate year variable.
09:29 Changeset [1792] by curtis
Add About information to ImageJ About Plugins menu.

11/14/06:

18:33 Changeset [1791] by chris
browser: 1) fixed minor length bug in cache indicator. now the axis size …

11/13/06:

18:24 Changeset [1790] by chris
browser: 1) fixed indicator to work if given proper data... works fine now …
17:25 Changeset [1789] by curtis
Add Ilya's -http-response flag.
17:14 Changeset [1788] by curtis
Use ID map to find file patterns within file stitcher when appropriate.
15:58 Changeset [1787] by curtis
Add support to file pattern for pattern detection from an arbitrary list …
14:30 Changeset [1786] by curtis
Add setIdMap and getIdMap methods to allow multiple format handlers to …

11/10/06:

11:13 Changeset [1785] by melissa
Added metadata support for ND2.
10:50 Changeset [1784] by curtis
Make getSizeC work correctly when intensity flag is unset.

11/09/06:

17:21 Changeset [1783] by curtis
Initial version of new and improved file stitcher.
16:22 Changeset [1782] by curtis
Add jj2000-5.1.jar to ant targets, as appropriate.
16:12 Changeset [1781] by curtis
Whitespace.
14:37 Changeset [1780] by melissa
Fixed plane offsets in ND2Reader.
14:23 Changeset [1779] by melissa
Added JJ2000 JAR.
14:21 Changeset [1778] by melissa
Populated ND2Reader's MetadataStore.
14:18 Changeset [1777] by melissa
- Added ND2Reader for JPEG 2000 and NIS-Elements ND2 files - Added …
13:51 Changeset [1776] by melissa
Re-added option to colorize channels.
08:55 Changeset [1775] by curtis
More work on Slim Plotter icon.
08:48 Changeset [1774] by curtis
Update Slim Plotter EXE icon (using GConvert 4.1).
08:46 Changeset [1773] by curtis
Icon for Slim Plotter.
08:35 Changeset [1772] by curtis
Update EXE to have better icons (used GConvert 4.1).
08:13 Changeset [1771] by curtis
Layout improvements, to fit Slim Plotter into 1024x768 properly.

11/08/06:

22:26 Changeset [1770] by curtis
Center window on screen.
17:37 Changeset [1769] by curtis
More useful for debugging to use java rather than javaw.
17:36 Changeset [1768] by curtis
Update Slim Plotter required classes.
17:21 Changeset [1767] by curtis
Make SlimPlotter one monolithic window.
17:18 Changeset [1766] by curtis
Use javaw, not bin/jre/javaw (no JRE packaged with Slim Plotter).
17:08 Changeset [1765] by curtis
Rename batch file to be less conspicuous.
17:08 Changeset [1764] by curtis
Better SlimPlotter launch stuff.
16:46 Changeset [1763] by curtis
Add methods for disabling individual panel placement arrows.
16:45 Changeset [1762] by curtis
Add API method for getting text area component.
15:19 Changeset [1761] by curtis
Remove EOL spaces.
15:18 Changeset [1760] by curtis
Add package statement to CacheIndicator; minor tweaks.

11/07/06:

18:19 Changeset [1759] by curtis
1) Add (far too much) logic to TiffReader to handle proper setting of …
14:24 Changeset [1758] by chris
browser: 1) fixed odd clipping of status text bug 2) added CacheIndicator, …
10:46 Changeset [1757] by curtis
Tweak Slim Plotter dependencies.
10:39 Changeset [1756] by curtis
Add explicit check and error reporting for Java3D.

11/06/06:

15:53 Changeset [1755] by melissa
Fixed NullPointerExceptions relating to orderCertain. Also tweaked …
15:20 Changeset [1754] by melissa
Tweaked dimension swapping logic in Bio-Rad reader.
14:20 Changeset [1753] by curtis
Only output new dimension order if it changed.
14:17 Changeset [1752] by curtis
Fix bugs in axis guesser.
14:09 Changeset [1751] by curtis
Tweaks; remove debugging statements.
13:35 Changeset [1750] by curtis
Finish initial axis guesser implementation; flesh out isOrderCertain …
09:24 Changeset [1749] by melissa
- Fixed a bug in RandomAccessStream - Tweaked native QuickTime reader to …

11/03/06:

17:43 Changeset [1748] by curtis
Some comments outlining what needs to be done for AxisGuesser.
15:21 Changeset [1747] by curtis
Some work on axis guessing logic for improved file stitcher: * basic …
11:39 Changeset [1746] by sorber
Switch from visad.ReflectedUniverse to loci.formats.ReflectedUniverse.
09:32 Changeset [1745] by curtis
Update what's new to v3.31a.
09:30 Changeset [1744] by curtis
Tweak version detection.
09:23 Changeset [1743] by curtis
Only use invokeAndWait to construct JFileChooser if the current thread is …

11/02/06:

17:12 Changeset [1742] by curtis
Fix bug in dist-slim target.
16:18 Changeset [1741] by curtis
Add option to toggle individual channels on and off.
14:01 Changeset [1740] by curtis
Update what's new list for 2006 Nov 2 release.
13:38 Changeset [1739] by curtis
Fix recursion error in read method.
13:16 Changeset [1738] by melissa
- Removed option to colorize channels. - Removed globalOffset logic from …
13:02 Changeset [1737] by melissa
Fixed endianness flag in OIB reader.
12:56 Changeset [1736] by curtis
Use loci.plugins.IJLauncher, not ij.ImageJ directly.
12:56 Changeset [1735] by curtis
Readd IJLauncher (will be needed to handle processing of server address, …
12:27 Changeset [1734] by curtis
Bundle everything into ij-jws.jar; add more clean targets.
11:56 Changeset [1733] by melissa
Tweaked strip offset calculation in Zeiss LSM reader.
11:55 Changeset [1732] by curtis
Propagate visbio.version variable to source code properly.
11:25 Changeset [1731] by melissa
Added option to colorize channels (doesn't require any more memory).
11:06 Changeset [1730] by curtis
Add build target for ij-jws.jar (ImageJ Java Web Start bundle); no more …
10:39 Changeset [1729] by curtis
Move some ImageJ JWS logic into loci/plugins; add handling of IJ_Props.txt …
10:32 Changeset [1728] by curtis
Update ImageJ JAR file.
09:30 Changeset [1727] by curtis
Cleaner reporting when VisBio is an "internal build."
09:18 Changeset [1726] by curtis
Fix bugs in dist-visbio targets.
08:08 Changeset [1725] by curtis
Update what's new list to release v3.31.

11/01/06:

16:46 Changeset [1724] by sorber
Slight change to freeform editing in FreeformTool:mouseDrag
16:12 Changeset [1723] by curtis
Use HTTP to call OMEIS instead of spawning local processes.
15:11 Changeset [1722] by curtis
Add abridged 2006 Sep 6 release notes to "what's new" file.
14:55 Changeset [1721] by curtis
Fix bug with initial buffer for small files.
14:25 Changeset [1720] by curtis
Instead of RandomAccessArray extending RandomAccessFile, and the ugly …
11:12 Changeset [1719] by melissa
Changed LIFReader to use RandomAccessStream (instead of RandomAccessFile).
11:02 Changeset [1718] by melissa
* Fixed how ChannelMerger and ChannelSeparator deal with 4 channels. * …

10/31/06:

19:09 Changeset [1717] by sorber
Improvements to editing freeform overlays (OverlayObject.java, …
15:30 Changeset [1716] by curtis
Fix several issues with isThisType logic in ImarisReader: * No need to …
15:01 Changeset [1715] by curtis
Fix NullPointerException if channel minimum or maximum isn't populated …
14:53 Changeset [1714] by curtis
Javadoc tweak.
13:31 Changeset [1713] by curtis
Update what's new list for Oct 31 release.
08:24 Changeset [1712] by melissa
Added support for Imaris 5 files; tweaked isThisType in ImarisReader.
07:54 Changeset [1711] by melissa
Added support for RGB ICS images - all ICS files should work now.

10/30/06:

16:53 Changeset [1710] by curtis
Example utility for editing an OME-XML Image name attribute.
16:32 Changeset [1709] by curtis
Add additional static getIndex signature, similar to new getZCTCoords …
16:23 Changeset [1708] by curtis
Example utility for converting third-party formats into OME-TIFF.
14:42 Changeset [1707] by curtis
Rename EditOMETIFF to EditTiff.
14:06 Changeset [1706] by curtis
Remove Bio-Formats/OME integration from todo list.
13:48 Changeset [1705] by curtis
Javadoc tweak.
13:45 Changeset [1704] by curtis
Fix bug where using IDS filename for the id caused initFile to be called …
13:14 Changeset [1703] by curtis
Update what's new file for Oct 30 minor release.
12:57 Changeset [1702] by curtis
Add dev-clean and dev-compile targets for compiling and removing *.class …
12:54 Changeset [1701] by curtis
Ignore *.class.
12:53 Changeset [1700] by curtis
No more need for this class, since it has been merged with ImageJ's …
12:36 Changeset [1699] by curtis
Construct file chooser in Swing worker thread, to avoid deadlocks.
12:14 Changeset [1698] by melissa
Added support for tiled TIFFs.
11:42 Changeset [1697] by melissa
Fixed some ICS bugs.
09:51 Changeset [1696] by melissa
Fixed exception in ICSReader.

10/27/06:

14:26 Changeset [1695] by curtis
Tweak.
13:43 Changeset [1694] by curtis
Add note indicating date of first official release.
13:42 Changeset [1693] by curtis
Add the last couple of release notes to the "What's new" document.
13:41 Changeset [1692] by curtis
Comment out Repository injection.
13:31 Changeset [1691] by sorber
loci.visbio.util.MathUtil I split getDistance(double[] a, double[] b, …
12:39 Changeset [1690] by curtis
Add "tools" task for building a JAR file containing many LOCI tools plus …
10:45 Changeset [1689] by melissa
Added "whats-new.txt".
07:53 Changeset [1688] by melissa
Temporarily commented out Nikon compression logic.

10/26/06:

15:52 Changeset [1687] by curtis
Progress on OMEIS/Bio-Formats command line utility.
14:12 Changeset [1686] by melissa
Construct a separate legacy ZVI reader for each normal reader.
14:07 Changeset [1685] by curtis
No need to override mapId for QTReader.
14:02 Changeset [1684] by curtis
Make mapIds work when delegating to legacy readers.
13:11 Changeset [1683] by melissa
Make sure native QT and ZVI readers propagate their state to the legacy …

10/25/06:

14:46 Changeset [1682] by curtis
Flesh out the getMappedId note a little bit.
14:41 Changeset [1681] by curtis
Fix bug when reading OME-XML images with height > width.
12:21 Changeset [1680] by melissa
Fixed endianness bug in OMEXMLReader - the endianness flag was being reset …
08:44 Changeset [1679] by melissa
Added getMappedId(String) to "getting started" guide.

10/24/06:

16:26 Changeset [1678] by curtis
Use mapping API for OmeisImporter.importIds.
16:13 Changeset [1677] by curtis
Use new mapId method for testIds.
15:49 Changeset [1676] by curtis
Move ImageReader-specific file format detection logic into …
15:46 Changeset [1675] by curtis
Tweak isThisType and javadoc.
15:46 Changeset [1674] by curtis
Tweak javadoc.
15:12 Changeset [1673] by curtis
1) Use "getMappedId(id)" instead of "id" everywhere the file is …
14:39 Changeset [1672] by curtis
Call mapped id getter 'getMappedId' instead of 'getActualFilename'; use …
14:27 Changeset [1671] by curtis
1) Add IFormatHandler.mapId(String, String) and …
13:55 Changeset [1670] by curtis
Tweak isThisType(String, boolean) documentation.
13:34 Changeset [1669] by curtis
Fix documentation typo.
13:04 Changeset [1668] by curtis
Progress on Bio-Formats/OMEIS command line utility.
08:39 Changeset [1667] by curtis
Script for launching OmeisImporter from the command line.
08:30 Changeset [1666] by melissa
Fixed FormatReader.testRead to handle files that begin with "-".

10/23/06:

17:41 Changeset [1665] by curtis
Begin work on command line OME importer that works in conjunction with …
15:49 Changeset [1664] by curtis
Remove illegal @author tags in methods.
15:48 Changeset [1663] by curtis
Fix documentation.

10/20/06:

18:01 Changeset [1662] by curtis
Rename decode method to more descriptive base64Decode.
17:35 Changeset [1661] by curtis
Bugfixes.
16:11 Changeset [1660] by curtis
Fix file pattern detection; report whether OME-TIFF comment was saved.
16:01 Changeset [1659] by curtis
No more need to specify number of time points (but still allowed).
08:48 Changeset [1658] by melissa
- Added a 'close' flag to most methods in OME upload API; this allows the …

10/19/06:

15:38 Changeset [1657] by curtis
Use setVisible(true) instead of deprecated show().
14:45 Changeset [1656] by curtis
Slim Plotter now uses Bio-Formats library externally.
14:44 Changeset [1655] by curtis
Minor tweaks.
14:30 Changeset [1654] by curtis
Use Bio-Formats (SDTReader) to read header information. Add Export button …
14:23 Changeset [1653] by curtis
A few minor edits.
14:23 Changeset [1652] by curtis
Change "-ignore" flag to "-nocolors".
13:57 Changeset [1651] by curtis
Make all fields public.
13:31 Changeset [1650] by melissa
Tweaked OME upload API.
12:05 Changeset [1649] by melissa
Fixed SizeC detection in OIFReader.
08:08 Changeset [1648] by melissa
Removed some unnecessary variables from AliconaReader.
08:01 Changeset [1647] by melissa
Added "getting started" guide that describes the basics of writing a new …
07:58 Changeset [1646] by melissa
Added draft of new OME uploader API.
07:51 Changeset [1645] by melissa
- Added support for Alicona AL3D - Added option to ignore color tables …

10/18/06:

10:27 Changeset [1644] by curtis
Use loci.formats.in package instead of loci.formats for readers.
10:25 Changeset [1643] by curtis
Rename script to something that doesn't conflict with GNU/Linux so much.
10:03 Changeset [1642] by melissa
Better dimension detection for OIF files.
09:51 Changeset [1641] by melissa
Fixed plane ordering in OIBReader.
08:14 Changeset [1640] by melissa
Better metadata parsing in LIFReader.
Note: See TracTimeline for information about the timeline view.