Timeline


and

11/27/06:

15:58 Changeset [1854] by curtis
Add option to override Z axis scale; more work on tau colorization option.
11:35 Changeset [1853] by melissa
Fixed compiler error in SewTiffs.
11:32 Changeset [1852] by melissa
Fixed how ICSReader populates the dimension order field in a …
10:48 Changeset [1851] by melissa
Fixed channel merging bug in importer.
10:18 Changeset [1850] by melissa
* Switched importer to use ImageJ's RGB merging methods instead of …

11/24/06:

14:08 Changeset [1849] by chris
browser: 1) cleared out all sorts of left-over gunk like custom …
11:34 Changeset [1848] by chris
fix of line 149, because ImageTools.scale() method no longer takes two …

11/22/06:

14:34 Changeset [1847] by sorber
Removed debug code from OverlayFreeform.toString()
14:00 Changeset [1846] by sorber
Freeforms can now be connected end-to-end
10:02 Changeset [1845] by melissa
Removed MNG reader from todo list.
10:01 Changeset [1844] by melissa
Added support for MNG. Note that this reader will not read JNG files, and …
09:27 Changeset [1843] by melissa
* Removed ImageTools stuff from todo list. * Minor tweaks and bugfixes.
08:20 Changeset [1842] by melissa
Fixed bug in ImageIOReader that prevented data/tiff/ms-paint.png from …

11/21/06:

17:59 Changeset [1841] by curtis
Better startup progress bar; hooks in place for changing 3-D plot …
16:23 Changeset [1840] by curtis
Change pad calls to reflect new signature.
16:18 Changeset [1839] by curtis
Update pad for shorts, ints, floats and doubles to match fixed byte …
15:09 Changeset [1838] by curtis
Fix ImageTools.scale and ImageTools.pad.
14:17 Changeset [1837] by chris
Browser: 1) fixed annoying bug that made the browser's window title …
11:13 Changeset [1836] by curtis
Fix ID mapping bug in LIFReader.
08:39 Changeset [1835] by melissa
Tweaked ImageTools.make24Bits.
08:25 Changeset [1834] by melissa
* Force importer to make all images in a stack the same size. * Fixed bug …

11/20/06:

16:51 Changeset [1833] by curtis
Fix reflection error when FileStitcher wraps ChannelSeparator or …
16:32 Changeset [1832] by curtis
Fix bug where Image's CreationDate was not populated for some …
16:05 Changeset [1831] by curtis
Initial version of Bio-Formats OME importer with support for file …
16:04 Changeset [1830] by curtis
As refreshing as "happypuppy" is for channel names, we should probably use …
16:00 Changeset [1829] by sorber
Changes additions to FreeformTool: -Erase function with CTRL key (split …
13:56 Changeset [1828] by curtis
Use better log messages for Apache; add Ilya to credits.
13:16 Changeset [1827] by curtis
Remove debugging statement.
13:15 Changeset [1826] by curtis
Fix bug in ImarisTiffReader causing all files to return true for …

11/17/06:

16:50 Changeset [1825] by curtis
Whitespace.
16:37 Changeset [1824] by curtis
Automatically set CreationDate attribute to default value (now).
16:27 Changeset [1823] by curtis
Output OME-XML to stderr if debug flag is set.
16:11 Changeset [1822] by melissa
Fixed pixel type mismatches in OME-TIFF files.
16:04 Changeset [1821] by curtis
Assign first Pixels object as default for its Image.
15:06 Changeset [1820] by curtis
Tweaks.
15:05 Changeset [1819] by curtis
Fix bugs in some OME-XML metadata setter methods.
14:54 Changeset [1818] by curtis
Be more thorough when checking Bio-Rad <2-3> special case.
12:04 Changeset [1817] by melissa
Set number of valid bits in OIB and OIF readers.
11:35 Changeset [1816] by melissa
Don't normalize floating point data.
11:08 Changeset [1815] by curtis
Whitespace.
11:07 Changeset [1814] by curtis
Whitespace.
11:05 Changeset [1813] by curtis
Change setIgnoreColorTable to setColorTableIgnored.
11:05 Changeset [1812] by curtis
Change method names to better match Java convention: * getNormalize -> …
10:58 Changeset [1811] by curtis
Also create only one blank bytes array, similar to blank image logic, for …
10:55 Changeset [1810] by curtis
* Add getIgnoreColorTable method, to match setIgnoreColorTable. * Remove a …
10:28 Changeset [1809] by curtis
Whitespace.
10:28 Changeset [1808] by curtis
Tweak pixel type DataBuffer assignments.
10:01 Changeset [1807] by melissa
Updated importer to use openBytes instead of openImage.
09:06 Changeset [1806] by melissa
- Added command-line option to normalize floating point data. - Expanded …

11/16/06:

16:06 Changeset [1805] by curtis
Add getSuffix method for getting string after all numerical blocks.
15:54 Changeset [1804] by curtis
Fix bug causing initFile to be called repeatedly in some cases.
15:54 Changeset [1803] by curtis
Remove unnecessary variable.
15:41 Changeset [1802] by curtis
Implement swapDimensions for FileStitcher; implement initial API for …
14:23 Changeset [1801] by chris
Browser: 1) fixed channel changer gui and added changelistener so that the …
14:11 Changeset [1800] by curtis
Fix scroll bar issue with GenericDialogs.

11/15/06:

18:24 Changeset [1799] by chris
browser: 1) made color mixing work for large datasets where each pixel of …
16:37 Changeset [1798] by curtis
Revamped Bio-Formats Importer plugin to properly record parameters with …
15:41 Changeset [1797] by sorber
Added a curve length item to the statistics for OverlayFreeform. Deleted …
14:23 Changeset [1796] by sorber
FreeformTool now uses tendril-like editing.
14:22 Changeset [1795] by sorber
Added method getDistSegWt to MathUtil.java
10:15 Changeset [1794] by curtis
Add "About LOCI Plugins" to ImageJ properties file (used by ij-jws.jar).
10:07 Changeset [1793] by curtis
Propagate year variable.
09:29 Changeset [1792] by curtis
Add About information to ImageJ About Plugins menu.

11/14/06:

18:33 Changeset [1791] by chris
browser: 1) fixed minor length bug in cache indicator. now the axis size …

11/13/06:

18:24 Changeset [1790] by chris
browser: 1) fixed indicator to work if given proper data... works fine now …
17:25 Changeset [1789] by curtis
Add Ilya's -http-response flag.
17:14 Changeset [1788] by curtis
Use ID map to find file patterns within file stitcher when appropriate.
15:58 Changeset [1787] by curtis
Add support to file pattern for pattern detection from an arbitrary list …
14:30 Changeset [1786] by curtis
Add setIdMap and getIdMap methods to allow multiple format handlers to …

11/10/06:

11:13 Changeset [1785] by melissa
Added metadata support for ND2.
10:50 Changeset [1784] by curtis
Make getSizeC work correctly when intensity flag is unset.

11/09/06:

17:21 Changeset [1783] by curtis
Initial version of new and improved file stitcher.
16:22 Changeset [1782] by curtis
Add jj2000-5.1.jar to ant targets, as appropriate.
16:12 Changeset [1781] by curtis
Whitespace.
14:37 Changeset [1780] by melissa
Fixed plane offsets in ND2Reader.
14:23 Changeset [1779] by melissa
Added JJ2000 JAR.
14:21 Changeset [1778] by melissa
Populated ND2Reader's MetadataStore.
14:18 Changeset [1777] by melissa
- Added ND2Reader for JPEG 2000 and NIS-Elements ND2 files - Added …
13:51 Changeset [1776] by melissa
Re-added option to colorize channels.
08:55 Changeset [1775] by curtis
More work on Slim Plotter icon.
08:48 Changeset [1774] by curtis
Update Slim Plotter EXE icon (using GConvert 4.1).
08:46 Changeset [1773] by curtis
Icon for Slim Plotter.
08:35 Changeset [1772] by curtis
Update EXE to have better icons (used GConvert 4.1).
08:13 Changeset [1771] by curtis
Layout improvements, to fit Slim Plotter into 1024x768 properly.

11/08/06:

22:26 Changeset [1770] by curtis
Center window on screen.
17:37 Changeset [1769] by curtis
More useful for debugging to use java rather than javaw.
17:36 Changeset [1768] by curtis
Update Slim Plotter required classes.
17:21 Changeset [1767] by curtis
Make SlimPlotter one monolithic window.
17:18 Changeset [1766] by curtis
Use javaw, not bin/jre/javaw (no JRE packaged with Slim Plotter).
17:08 Changeset [1765] by curtis
Rename batch file to be less conspicuous.
17:08 Changeset [1764] by curtis
Better SlimPlotter launch stuff.
16:46 Changeset [1763] by curtis
Add methods for disabling individual panel placement arrows.
16:45 Changeset [1762] by curtis
Add API method for getting text area component.
15:19 Changeset [1761] by curtis
Remove EOL spaces.
15:18 Changeset [1760] by curtis
Add package statement to CacheIndicator; minor tweaks.

11/07/06:

18:19 Changeset [1759] by curtis
1) Add (far too much) logic to TiffReader to handle proper setting of …
14:24 Changeset [1758] by chris
browser: 1) fixed odd clipping of status text bug 2) added CacheIndicator, …
10:46 Changeset [1757] by curtis
Tweak Slim Plotter dependencies.
10:39 Changeset [1756] by curtis
Add explicit check and error reporting for Java3D.

11/06/06:

15:53 Changeset [1755] by melissa
Fixed NullPointerExceptions relating to orderCertain. Also tweaked …
15:20 Changeset [1754] by melissa
Tweaked dimension swapping logic in Bio-Rad reader.
14:20 Changeset [1753] by curtis
Only output new dimension order if it changed.
14:17 Changeset [1752] by curtis
Fix bugs in axis guesser.
14:09 Changeset [1751] by curtis
Tweaks; remove debugging statements.
13:35 Changeset [1750] by curtis
Finish initial axis guesser implementation; flesh out isOrderCertain …
09:24 Changeset [1749] by melissa
- Fixed a bug in RandomAccessStream - Tweaked native QuickTime reader to …

11/03/06:

17:43 Changeset [1748] by curtis
Some comments outlining what needs to be done for AxisGuesser.
15:21 Changeset [1747] by curtis
Some work on axis guessing logic for improved file stitcher: * basic …
11:39 Changeset [1746] by sorber
Switch from visad.ReflectedUniverse to loci.formats.ReflectedUniverse.
09:32 Changeset [1745] by curtis
Update what's new to v3.31a.
09:30 Changeset [1744] by curtis
Tweak version detection.
09:23 Changeset [1743] by curtis
Only use invokeAndWait to construct JFileChooser if the current thread is …

11/02/06:

17:12 Changeset [1742] by curtis
Fix bug in dist-slim target.
16:18 Changeset [1741] by curtis
Add option to toggle individual channels on and off.
14:01 Changeset [1740] by curtis
Update what's new list for 2006 Nov 2 release.
13:38 Changeset [1739] by curtis
Fix recursion error in read method.
13:16 Changeset [1738] by melissa
- Removed option to colorize channels. - Removed globalOffset logic from …
13:02 Changeset [1737] by melissa
Fixed endianness flag in OIB reader.
12:56 Changeset [1736] by curtis
Use loci.plugins.IJLauncher, not ij.ImageJ directly.
12:56 Changeset [1735] by curtis
Readd IJLauncher (will be needed to handle processing of server address, …
12:27 Changeset [1734] by curtis
Bundle everything into ij-jws.jar; add more clean targets.
11:56 Changeset [1733] by melissa
Tweaked strip offset calculation in Zeiss LSM reader.
11:55 Changeset [1732] by curtis
Propagate visbio.version variable to source code properly.
11:25 Changeset [1731] by melissa
Added option to colorize channels (doesn't require any more memory).
11:06 Changeset [1730] by curtis
Add build target for ij-jws.jar (ImageJ Java Web Start bundle); no more …
10:39 Changeset [1729] by curtis
Move some ImageJ JWS logic into loci/plugins; add handling of IJ_Props.txt …
10:32 Changeset [1728] by curtis
Update ImageJ JAR file.
09:30 Changeset [1727] by curtis
Cleaner reporting when VisBio is an "internal build."
09:18 Changeset [1726] by curtis
Fix bugs in dist-visbio targets.
08:08 Changeset [1725] by curtis
Update what's new list to release v3.31.

11/01/06:

16:46 Changeset [1724] by sorber
Slight change to freeform editing in FreeformTool:mouseDrag
16:12 Changeset [1723] by curtis
Use HTTP to call OMEIS instead of spawning local processes.
15:11 Changeset [1722] by curtis
Add abridged 2006 Sep 6 release notes to "what's new" file.
14:55 Changeset [1721] by curtis
Fix bug with initial buffer for small files.
14:25 Changeset [1720] by curtis
Instead of RandomAccessArray extending RandomAccessFile, and the ugly …
11:12 Changeset [1719] by melissa
Changed LIFReader to use RandomAccessStream (instead of RandomAccessFile).
11:02 Changeset [1718] by melissa
* Fixed how ChannelMerger and ChannelSeparator deal with 4 channels. * …

10/31/06:

19:09 Changeset [1717] by sorber
Improvements to editing freeform overlays (OverlayObject.java, …
15:30 Changeset [1716] by curtis
Fix several issues with isThisType logic in ImarisReader: * No need to …
15:01 Changeset [1715] by curtis
Fix NullPointerException if channel minimum or maximum isn't populated …
14:53 Changeset [1714] by curtis
Javadoc tweak.
13:31 Changeset [1713] by curtis
Update what's new list for Oct 31 release.
08:24 Changeset [1712] by melissa
Added support for Imaris 5 files; tweaked isThisType in ImarisReader.
07:54 Changeset [1711] by melissa
Added support for RGB ICS images - all ICS files should work now.

10/30/06:

16:53 Changeset [1710] by curtis
Example utility for editing an OME-XML Image name attribute.
16:32 Changeset [1709] by curtis
Add additional static getIndex signature, similar to new getZCTCoords …
16:23 Changeset [1708] by curtis
Example utility for converting third-party formats into OME-TIFF.
14:42 Changeset [1707] by curtis
Rename EditOMETIFF to EditTiff.
14:06 Changeset [1706] by curtis
Remove Bio-Formats/OME integration from todo list.
13:48 Changeset [1705] by curtis
Javadoc tweak.
13:45 Changeset [1704] by curtis
Fix bug where using IDS filename for the id caused initFile to be called …
13:14 Changeset [1703] by curtis
Update what's new file for Oct 30 minor release.
12:57 Changeset [1702] by curtis
Add dev-clean and dev-compile targets for compiling and removing *.class …
12:54 Changeset [1701] by curtis
Ignore *.class.
12:53 Changeset [1700] by curtis
No more need for this class, since it has been merged with ImageJ's …
12:36 Changeset [1699] by curtis
Construct file chooser in Swing worker thread, to avoid deadlocks.
12:14 Changeset [1698] by melissa
Added support for tiled TIFFs.
11:42 Changeset [1697] by melissa
Fixed some ICS bugs.
09:51 Changeset [1696] by melissa
Fixed exception in ICSReader.
Note: See TracTimeline for information about the timeline view.