Timeline


and

12/08/06:

15:10 Changeset [1916] by curtis
Change JJ2000 to JAI Image I/O in ant build files.
12:53 Changeset [1915] by curtis
Eliminate 1.5-specific use of ScrollPane.setPreferredSize(Dimension).
11:55 Changeset [1914] by curtis
Add Windows batch files for OME Notebook and Slim Plotter.
11:55 Changeset [1913] by curtis
Ignore .class files in test package.
11:55 Changeset [1912] by curtis
Tiny tweak to getSuffix.
08:11 Changeset [1911] by melissa
Fixed bug in image offset calculation.

12/07/06:

12:09 Changeset [1910] by melissa
Removed debugging statements.
12:07 Changeset [1909] by melissa
* Added LociUploader to the list of ImageJ plugins. This plugin uploads …
07:34 Changeset [1908] by melissa
Removed debugging line from BaseTiffReader.getChannelGlobalMinimum

12/06/06:

18:56 Changeset [1907] by chris
Browser: 1) fixed bug where channel checkbox wasn't doing anything 2) …
17:26 Changeset [1906] by chris
Browser: 1) removed light colors cyan,yellow,pink from block color scheme. …
17:07 Changeset [1905] by chris
I don't know why it's telling me there's changes to BaseTiffReader, but …
12:11 Changeset [1904] by melissa
Fixed width/height detection bug in POI ZVI Reader.
11:08 Changeset [1903] by melissa
* Fixed ND2/JPEG-2000 bug. This required switching from JJ2000 to JAI; …

12/05/06:

18:11 Changeset [1902] by curtis
Add junit-4.1.jar to list of external libraries.
17:51 Changeset [1901] by curtis
JAR file for JUnit.
17:50 Changeset [1900] by curtis
Initial skeleton for testing framework. Might be totally suboptimal.
14:31 Changeset [1899] by chris
browser: 1) extremely hacky bug fix for dimensional swap when using cache …
13:52 Changeset [1898] by curtis
Rethrow exceptions as FormatException rather than printStackTrace.
12:34 Changeset [1897] by curtis
Add closing paren to ZCT size mismatch exceptions.
12:07 Changeset [1896] by curtis
Suppress exception when attempting to obtain thumbnail.
08:21 Changeset [1895] by curtis
Version with Melissa's recent changes.

12/04/06:

18:26 Changeset [1894] by chris
browser: 1) fixed transmitted checkbox bug when it was enabled when sizeC …
17:37 Changeset [1893] by chris
browser: 1) fixed problem with infinite loop in CacheIndicator's paint …
17:28 Changeset [1892] by chris
browser: 1) resolved conflict in LociDataBrowser 2) fixed slice-group …
15:04 Changeset [1891] by melissa
Removed debugging logic.
14:57 Changeset [1890] by curtis
Add interleaved flag to core metadata output.
12:29 Changeset [1889] by melissa
Added first draft of new OME uploader. There is still some testing and …

12/02/06:

15:02 Changeset [1888] by curtis
Catch NoClassDefFoundError in addition to ClassNotFoundException.
14:59 Changeset [1887] by melissa
Don't return a 3-channel byte array when calling openBytes on …

12/01/06:

09:31 Changeset [1886] by melissa
Added support for reading MDB files associated with LSM files. Will …

11/30/06:

13:32 Changeset [1885] by curtis
Don't let dataset name be null.
11:30 Changeset [1884] by melissa
Fixed some stuff in ZeissZVIReader - 16-bit RGB data is now detected …
09:45 Changeset [1883] by curtis
Tweak release date.
09:33 Changeset [1882] by curtis
Cleaner exception handling.
09:29 Changeset [1881] by curtis
Remove debugging statement.
09:29 Changeset [1880] by curtis
One more documentation tweak.
09:26 Changeset [1879] by curtis
Remove some unnecessary local variables; add some additional comments.
07:57 Changeset [1878] by melissa
Fixed how importer handles floating point ICS files.

11/29/06:

14:43 Changeset [1877] by curtis
Fix RGB merge bug I introduced when I added support for separate Z, C and …
14:35 Changeset [1876] by curtis
Initialize file in ICSReader.isInterleaved, if not already initialized.
14:35 Changeset [1875] by curtis
Remove "grayscale" qualifier from unnormalized floats exception.
14:11 Changeset [1874] by melissa
Always throw an exception if we run into unnormalized float data.
13:43 Changeset [1873] by curtis
Fix for sporadic Vector and JList ArrayIndexOutOfBoundsExceptions.
11:27 Changeset [1872] by melissa
Update for Nov 29 release.
09:35 Changeset [1871] by melissa
Fixed pixel type mismatch.
09:29 Changeset [1870] by melissa
Tweaked LeicaReader so that it doesn't throw an exception when "-nocolors" …
09:21 Changeset [1869] by melissa
Use isColorTableIgnored() instead of local flag.
08:56 Changeset [1868] by melissa
* Fixed bug in ImageTools.padImage methods (respect 'interleaved' flag) * …
08:00 Changeset [1867] by melissa
* Fixed Perkin-Elmer dimension ordering * Tweaked LeicaReader to handle …

11/28/06:

17:49 Changeset [1866] by curtis
Gray out inapplicable options.
17:47 Changeset [1865] by sorber
Smoother transitions toggling between erase and draw modes Enabled saving …
17:17 Changeset [1864] by curtis
Remove version number.
17:11 Changeset [1863] by curtis
Flag Slim Plotter's JavaApplicationStub as executable.
17:10 Changeset [1862] by curtis
Minor tweak.
16:57 Changeset [1861] by curtis
Update SlimPlotter Mac OS X launcher to use JAR files in main folder.
16:47 Changeset [1860] by curtis
Fix compile error with error message.
16:42 Changeset [1859] by curtis
Initial version of Mac OS X launcher for Slim Plotter.
16:30 Changeset [1858] by curtis
Slim Plotter bugfixes and improvements: * Fix overflow bug in new progress …
15:48 Changeset [1857] by chris
Browser: 1)gui controls for switching internal axis priority order now …
14:50 Changeset [1856] by curtis
Allow specification of separate Z, T and C ranges when dimension order is …
14:49 Changeset [1855] by curtis
Change ImageTools.scale to have a single boolean parameter again.

11/27/06:

15:58 Changeset [1854] by curtis
Add option to override Z axis scale; more work on tau colorization option.
11:35 Changeset [1853] by melissa
Fixed compiler error in SewTiffs.
11:32 Changeset [1852] by melissa
Fixed how ICSReader populates the dimension order field in a …
10:48 Changeset [1851] by melissa
Fixed channel merging bug in importer.
10:18 Changeset [1850] by melissa
* Switched importer to use ImageJ's RGB merging methods instead of …

11/24/06:

14:08 Changeset [1849] by chris
browser: 1) cleared out all sorts of left-over gunk like custom …
11:34 Changeset [1848] by chris
fix of line 149, because ImageTools.scale() method no longer takes two …

11/22/06:

14:34 Changeset [1847] by sorber
Removed debug code from OverlayFreeform.toString()
14:00 Changeset [1846] by sorber
Freeforms can now be connected end-to-end
10:02 Changeset [1845] by melissa
Removed MNG reader from todo list.
10:01 Changeset [1844] by melissa
Added support for MNG. Note that this reader will not read JNG files, and …
09:27 Changeset [1843] by melissa
* Removed ImageTools stuff from todo list. * Minor tweaks and bugfixes.
08:20 Changeset [1842] by melissa
Fixed bug in ImageIOReader that prevented data/tiff/ms-paint.png from …

11/21/06:

17:59 Changeset [1841] by curtis
Better startup progress bar; hooks in place for changing 3-D plot …
16:23 Changeset [1840] by curtis
Change pad calls to reflect new signature.
16:18 Changeset [1839] by curtis
Update pad for shorts, ints, floats and doubles to match fixed byte …
15:09 Changeset [1838] by curtis
Fix ImageTools.scale and ImageTools.pad.
14:17 Changeset [1837] by chris
Browser: 1) fixed annoying bug that made the browser's window title …
11:13 Changeset [1836] by curtis
Fix ID mapping bug in LIFReader.
08:39 Changeset [1835] by melissa
Tweaked ImageTools.make24Bits.
08:25 Changeset [1834] by melissa
* Force importer to make all images in a stack the same size. * Fixed bug …

11/20/06:

16:51 Changeset [1833] by curtis
Fix reflection error when FileStitcher wraps ChannelSeparator or …
16:32 Changeset [1832] by curtis
Fix bug where Image's CreationDate was not populated for some …
16:05 Changeset [1831] by curtis
Initial version of Bio-Formats OME importer with support for file …
16:04 Changeset [1830] by curtis
As refreshing as "happypuppy" is for channel names, we should probably use …
16:00 Changeset [1829] by sorber
Changes additions to FreeformTool: -Erase function with CTRL key (split …
13:56 Changeset [1828] by curtis
Use better log messages for Apache; add Ilya to credits.
13:16 Changeset [1827] by curtis
Remove debugging statement.
13:15 Changeset [1826] by curtis
Fix bug in ImarisTiffReader causing all files to return true for …

11/17/06:

16:50 Changeset [1825] by curtis
Whitespace.
16:37 Changeset [1824] by curtis
Automatically set CreationDate attribute to default value (now).
16:27 Changeset [1823] by curtis
Output OME-XML to stderr if debug flag is set.
16:11 Changeset [1822] by melissa
Fixed pixel type mismatches in OME-TIFF files.
16:04 Changeset [1821] by curtis
Assign first Pixels object as default for its Image.
15:06 Changeset [1820] by curtis
Tweaks.
15:05 Changeset [1819] by curtis
Fix bugs in some OME-XML metadata setter methods.
14:54 Changeset [1818] by curtis
Be more thorough when checking Bio-Rad <2-3> special case.
12:04 Changeset [1817] by melissa
Set number of valid bits in OIB and OIF readers.
11:35 Changeset [1816] by melissa
Don't normalize floating point data.
11:08 Changeset [1815] by curtis
Whitespace.
11:07 Changeset [1814] by curtis
Whitespace.
11:05 Changeset [1813] by curtis
Change setIgnoreColorTable to setColorTableIgnored.
11:05 Changeset [1812] by curtis
Change method names to better match Java convention: * getNormalize -> …
10:58 Changeset [1811] by curtis
Also create only one blank bytes array, similar to blank image logic, for …
10:55 Changeset [1810] by curtis
* Add getIgnoreColorTable method, to match setIgnoreColorTable. * Remove a …
10:28 Changeset [1809] by curtis
Whitespace.
10:28 Changeset [1808] by curtis
Tweak pixel type DataBuffer assignments.
10:01 Changeset [1807] by melissa
Updated importer to use openBytes instead of openImage.
09:06 Changeset [1806] by melissa
- Added command-line option to normalize floating point data. - Expanded …

11/16/06:

16:06 Changeset [1805] by curtis
Add getSuffix method for getting string after all numerical blocks.
15:54 Changeset [1804] by curtis
Fix bug causing initFile to be called repeatedly in some cases.
15:54 Changeset [1803] by curtis
Remove unnecessary variable.
15:41 Changeset [1802] by curtis
Implement swapDimensions for FileStitcher; implement initial API for …
14:23 Changeset [1801] by chris
Browser: 1) fixed channel changer gui and added changelistener so that the …
14:11 Changeset [1800] by curtis
Fix scroll bar issue with GenericDialogs.

11/15/06:

18:24 Changeset [1799] by chris
browser: 1) made color mixing work for large datasets where each pixel of …
16:37 Changeset [1798] by curtis
Revamped Bio-Formats Importer plugin to properly record parameters with …
15:41 Changeset [1797] by sorber
Added a curve length item to the statistics for OverlayFreeform. Deleted …
14:23 Changeset [1796] by sorber
FreeformTool now uses tendril-like editing.
14:22 Changeset [1795] by sorber
Added method getDistSegWt to MathUtil.java
10:15 Changeset [1794] by curtis
Add "About LOCI Plugins" to ImageJ properties file (used by ij-jws.jar).
10:07 Changeset [1793] by curtis
Propagate year variable.
09:29 Changeset [1792] by curtis
Add About information to ImageJ About Plugins menu.

11/14/06:

18:33 Changeset [1791] by chris
browser: 1) fixed minor length bug in cache indicator. now the axis size …

11/13/06:

18:24 Changeset [1790] by chris
browser: 1) fixed indicator to work if given proper data... works fine now …
17:25 Changeset [1789] by curtis
Add Ilya's -http-response flag.
17:14 Changeset [1788] by curtis
Use ID map to find file patterns within file stitcher when appropriate.
15:58 Changeset [1787] by curtis
Add support to file pattern for pattern detection from an arbitrary list …
14:30 Changeset [1786] by curtis
Add setIdMap and getIdMap methods to allow multiple format handlers to …

11/10/06:

11:13 Changeset [1785] by melissa
Added metadata support for ND2.
10:50 Changeset [1784] by curtis
Make getSizeC work correctly when intensity flag is unset.

11/09/06:

17:21 Changeset [1783] by curtis
Initial version of new and improved file stitcher.
16:22 Changeset [1782] by curtis
Add jj2000-5.1.jar to ant targets, as appropriate.
16:12 Changeset [1781] by curtis
Whitespace.
14:37 Changeset [1780] by melissa
Fixed plane offsets in ND2Reader.
14:23 Changeset [1779] by melissa
Added JJ2000 JAR.
14:21 Changeset [1778] by melissa
Populated ND2Reader's MetadataStore.
14:18 Changeset [1777] by melissa
- Added ND2Reader for JPEG 2000 and NIS-Elements ND2 files - Added …
13:51 Changeset [1776] by melissa
Re-added option to colorize channels.
08:55 Changeset [1775] by curtis
More work on Slim Plotter icon.
08:48 Changeset [1774] by curtis
Update Slim Plotter EXE icon (using GConvert 4.1).
08:46 Changeset [1773] by curtis
Icon for Slim Plotter.
08:35 Changeset [1772] by curtis
Update EXE to have better icons (used GConvert 4.1).
08:13 Changeset [1771] by curtis
Layout improvements, to fit Slim Plotter into 1024x768 properly.

11/08/06:

22:26 Changeset [1770] by curtis
Center window on screen.
17:37 Changeset [1769] by curtis
More useful for debugging to use java rather than javaw.
17:36 Changeset [1768] by curtis
Update Slim Plotter required classes.
17:21 Changeset [1767] by curtis
Make SlimPlotter one monolithic window.
17:18 Changeset [1766] by curtis
Use javaw, not bin/jre/javaw (no JRE packaged with Slim Plotter).
17:08 Changeset [1765] by curtis
Rename batch file to be less conspicuous.
17:08 Changeset [1764] by curtis
Better SlimPlotter launch stuff.
16:46 Changeset [1763] by curtis
Add methods for disabling individual panel placement arrows.
16:45 Changeset [1762] by curtis
Add API method for getting text area component.
15:19 Changeset [1761] by curtis
Remove EOL spaces.
15:18 Changeset [1760] by curtis
Add package statement to CacheIndicator; minor tweaks.
Note: See TracTimeline for information about the timeline view.