Timeline


and

01/04/07:

21:55 Changeset [2028] by nor
Added comments, test method
21:54 Changeset [2027] by nor
Added write(String bitString) method
17:33 Changeset [2026] by chris
Browser: 1) references to getSizeC() in CacheManager changed to …
17:27 Changeset [2025] by curtis
First cut at disallowing mutually exclusive import options.
17:12 Changeset [2024] by sorber
Added shading to TransientSelectBox (rgb -> rgba for all OverlayObjects' …
16:59 Changeset [2023] by chris
Browser: 1) Better support for cache/no cache, but RAM thing isn't there …
16:06 Changeset [2022] by chris
Browser: 1) changed all references to filestitcher in cachemanager to be …
15:24 Changeset [2021] by chris
Browser: 1) OptionsWindow now functional for both FileStitcher and …
15:10 Changeset [2020] by curtis
Fix problem where dev-compile always compiled all files.
14:45 Changeset [2019] by curtis
Fix bug where background slice loading thread took 100% CPU.
14:36 Changeset [2018] by curtis
Fix bug where "View stack with" preference was not properly set to old …
14:04 Changeset [2017] by chris
Browser: 1) something here must have changed, but I forget at this point. …
13:48 Changeset [2016] by melissa
* Force LeicaReader.initFile to close open files. * Make sure ReaderTest …
13:15 Changeset [2015] by chris
Browser: 1) annoying ass debug messages quashed!
13:12 Changeset [2014] by chris
Browser: 1)reverted getTempSlice(index) to functional method.
13:08 Changeset [2013] by curtis
One email link that Melissa missed.
12:51 Changeset [2012] by chris
Browser: 1) Multiple threads being created is fixed... now there's only …
11:37 Changeset [2011] by melissa
Tweaked support for planar TIFF files (fixes issue with 2-channel LSM …
10:02 Changeset [2010] by melissa
* Tweaked OIB and OIF metadata parsing so that the output looks the same. …

01/03/07:

15:49 Changeset [2009] by chris
Browser: 1) fixed it so that random filepatterns will be displayed as per …
14:33 Changeset [2008] by melissa
Allow file name switching.
14:30 Changeset [2007] by chris
Browser: 1) fixed bug that index of image was off by -1 2) fixed indicator …
13:49 Changeset [2006] by melissa
Fix to allow file name switching.
13:05 Changeset [2005] by chris
Fix previous getEffectiveSizeC fix.
12:54 Changeset [2004] by melissa
More changes to allow file name switching.
12:42 Changeset [2003] by chris
Clean up getEffectiveSizeC implementations.
12:10 Changeset [2002] by melissa
Fixed to allow the output file name to be changed before the last plane …
12:01 Changeset [2001] by melissa
Added close method to IFormatWriter API; tweaked most readers to either …
11:51 Changeset [2000] by melissa
Fixed bug in isThisType.
10:53 Changeset [1999] by chris
PrairieReader: 1) reverted code around line 214 back to what it was …
10:45 Changeset [1998] by chris
PrairieReader: 1) slight fix to avoid infinite loop I created around line …
10:35 Changeset [1997] by chris
PrairieReader: 1) added code at line 214 to preclude the substring method …
09:11 Changeset [1996] by melissa
Added support for Prairie TIFF files.

01/02/07:

17:25 Changeset [1995] by sorber
Began working on transient box for selecting multiple overlays.
16:13 Changeset [1994] by curtis
Tweak.
15:52 Changeset [1993] by curtis
Add stack reordering logic (to XYZCT) for View5D display option.
14:20 Changeset [1992] by curtis
Use new ImageJ v1.38f functionality to temporarily disable …
13:41 Changeset [1991] by melissa
Sped up initialization and tweaked dimension detection logic to be more …
13:40 Changeset [1990] by melissa
Fixed bug in findNode that caused it to incorrectly return null values.
12:37 Changeset [1989] by curtis
Whitespace.
12:35 Changeset [1988] by curtis
Whitespace.
12:33 Changeset [1987] by curtis
Whitespace.
08:19 Changeset [1986] by melissa
Check for missing "valid bit count" field.

12/29/06:

15:59 Changeset [1985] by chris
Importer/Browser: 1) non-stitched files now work 2) actually passes the …
14:22 Changeset [1984] by chris
Browser: 1) fix of channels being off bug
14:01 Changeset [1983] by chris
Browser: 1) primitive cache toggling added. Currently unable to warn if …
13:10 Changeset [1982] by chris
Importer/Browser: 1) merging RGB almost works, although there's a bug with …
12:56 Changeset [1981] by chris
Importer: 1) Changed to circumvent loading of ImagePlus if 4DBrowser is …

12/28/06:

16:36 Changeset [1980] by chris
Importer: 1) changes to use a different constructer that just accepts id …
15:21 Changeset [1979] by chris
importer: 1) disabled all browser capability for the time being because …
13:08 Changeset [1978] by chris
Importer: 1) reverted mostly, problem remains that the importer itself …
11:16 Changeset [1977] by chris
Importer: 1) Debugging, something's wierd.
11:03 Changeset [1976] by chris
Importer: 1) Should now use updated constructer to show in 4DBrowser when …

12/27/06:

14:27 Changeset [1975] by sorber
hexToColor now throws exception.
14:10 Changeset [1974] by sorber
LoadOverlays working.

12/22/06:

16:33 Changeset [1973] by curtis
Fix bug in findNode causing an OIB dataset from Stefan Terjung not to read …
15:10 Changeset [1972] by curtis
Tweak what's new list.
14:42 Changeset [1971] by curtis
Only show View5D on the list if it is available.
14:35 Changeset [1970] by curtis
Ha, changing my mind again! We can fix the broken 4D Data Browser for now …
14:30 Changeset [1969] by curtis
Ugh, OME Plugin is broken right now anyway (changes to the 4D Data Browser …
14:27 Changeset [1968] by curtis
Leave "OME Plugin" on the list for now.
13:43 Changeset [1967] by curtis
Add simple API for adding and removing reader and writer classes from …
10:38 Changeset [1966] by melissa
Include notes on recent API additions.
08:32 Changeset [1965] by melissa
Fixed ordering for Image5D (hopefully). We can't call swapDimensions, …

12/21/06:

14:36 Changeset [1964] by curtis
Comment out 4D Data Browser support, until Chris adds it.
14:29 Changeset [1963] by curtis
Swap dimensions to XYCZT order if using Image5D for display.
13:45 Changeset [1962] by curtis
Update what's new list.
12:30 Changeset [1961] by curtis
Tweak in case used files is still null somehow.
12:24 Changeset [1960] by curtis
Handle cases where file pattern detector fails (returns null).
12:14 Changeset [1959] by curtis
Clean up getUsedFiles -- never wrap results with getMappedId. Still needs …
11:51 Changeset [1958] by melissa
Fixed openBytes bug.

12/20/06:

17:55 Changeset [1957] by curtis
Workaround in case used files list is null.
17:12 Changeset [1956] by curtis
Turn off debugging flag.
17:10 Changeset [1955] by curtis
Fix print statement.
17:10 Changeset [1954] by curtis
Bugfixes.
16:56 Changeset [1953] by curtis
Retool ReaderTest to avoid weird use of static variables; add comments …
16:42 Changeset [1952] by curtis
Remove debugging statement.
16:40 Changeset [1951] by curtis
* Fix bug causing "Out of order access or missing metadata 'sizeC'." …

12/19/06:

16:46 Changeset [1950] by curtis
Make reader tester build list more quickly (no checks for used files), …
14:50 Changeset [1949] by curtis
More javadoc tweaking.
14:47 Changeset [1948] by curtis
Add package description for loci.formats.test; update ReaderTest javadoc.
14:42 Changeset [1947] by curtis
Change debugging logic to call new FormatReader.debug(String) method. …
13:55 Changeset [1946] by melissa
Reworked testing framework to use JUnit 3.8 (Java 1.4).
13:48 Changeset [1945] by curtis
* Fix bugs in -range command line parameter. * Change behavior so that end …
12:50 Changeset [1944] by curtis
Clean up testRead command line argument documentation.
12:18 Changeset [1943] by melissa
Added "-debug" command-line option to turn on debugging statements.
08:27 Changeset [1942] by melissa
Added multi-series support for OIB.

12/18/06:

15:24 Changeset [1941] by curtis
* Add file stitching pattern confirmation dialog, so that user can tweak …
15:10 Changeset [1940] by curtis
Fix bugs in multi-series parameter population causing initFile to be …
11:00 Changeset [1939] by melissa
Bugfixes.

12/14/06:

15:04 Changeset [1938] by melissa
Fixed FileStitcher to respect multi-series files.
13:50 Changeset [1937] by melissa
Removed duplicate calibration code and tweaked Image5D/View5D integration.
13:03 Changeset [1936] by curtis
Eliminate unnecessary data files list.
12:20 Changeset [1935] by curtis
Correct parameter name in javadoc.
12:15 Changeset [1934] by curtis
Make Slim Plotter work with single-channel lifetime data.

12/13/06:

17:21 Changeset [1933] by curtis
Fix macro recording with stack view format (change to a unique parameter …
17:14 Changeset [1932] by curtis
Only show 4D Data Browser option if it is available (unlikely it wouldn't …
17:13 Changeset [1931] by curtis
Only list Image5D and View5D as options if the plugins are available.
17:11 Changeset [1930] by curtis
No need for these JAR files to be in the repository.
15:46 Changeset [1929] by curtis
Use JUnit 3.8, not 4.1, since 4.1 requires Java 5.
15:45 Changeset [1928] by curtis
Eliminate divide by zero errors for single-channel data.
14:56 Changeset [1927] by curtis
Eliminate most 1.5-specific code.
09:18 Changeset [1926] by melissa
* Added new API method "String[] getUsedFiles(String)", which returns a …

12/12/06:

13:55 Changeset [1925] by chris
browser: 1) slight fix to thumbnail, since it would say "Loading Preview" …
13:24 Changeset [1924] by melissa
Removed some debugging statements, and improved garbage collection.
13:24 Changeset [1923] by chris
browser: 1) added a "Loading Preview..." text for when the thumbnail is …
12:55 Changeset [1922] by chris
browser: 1) fixed annoying bug that started 2-channeled images on the …
08:58 Changeset [1921] by melissa
Rewrote testing framework. To use, run: java …

12/11/06:

18:15 Changeset [1920] by chris
Browser: 1) fixed annoying bug where CacheIndicator wouldn't accurately …
17:08 Changeset [1919] by chris
browser: 1) Fixed painting of CacheIndicator when the the slider has fewer …
13:29 Changeset [1918] by sorber
OverlayIO -- can save and load Freeforms FreeformTool -- setDrawing(false) …
10:11 Changeset [1917] by melissa
Integrated Image5D and View5D with importer.

12/08/06:

15:10 Changeset [1916] by curtis
Change JJ2000 to JAI Image I/O in ant build files.
12:53 Changeset [1915] by curtis
Eliminate 1.5-specific use of ScrollPane.setPreferredSize(Dimension).
11:55 Changeset [1914] by curtis
Add Windows batch files for OME Notebook and Slim Plotter.
11:55 Changeset [1913] by curtis
Ignore .class files in test package.
11:55 Changeset [1912] by curtis
Tiny tweak to getSuffix.
08:11 Changeset [1911] by melissa
Fixed bug in image offset calculation.

12/07/06:

12:09 Changeset [1910] by melissa
Removed debugging statements.
12:07 Changeset [1909] by melissa
* Added LociUploader to the list of ImageJ plugins. This plugin uploads …
07:34 Changeset [1908] by melissa
Removed debugging line from BaseTiffReader.getChannelGlobalMinimum

12/06/06:

18:56 Changeset [1907] by chris
Browser: 1) fixed bug where channel checkbox wasn't doing anything 2) …
17:26 Changeset [1906] by chris
Browser: 1) removed light colors cyan,yellow,pink from block color scheme. …
17:07 Changeset [1905] by chris
I don't know why it's telling me there's changes to BaseTiffReader, but …
12:11 Changeset [1904] by melissa
Fixed width/height detection bug in POI ZVI Reader.
11:08 Changeset [1903] by melissa
* Fixed ND2/JPEG-2000 bug. This required switching from JJ2000 to JAI; …

12/05/06:

18:11 Changeset [1902] by curtis
Add junit-4.1.jar to list of external libraries.
17:51 Changeset [1901] by curtis
JAR file for JUnit.
17:50 Changeset [1900] by curtis
Initial skeleton for testing framework. Might be totally suboptimal.
14:31 Changeset [1899] by chris
browser: 1) extremely hacky bug fix for dimensional swap when using cache …
13:52 Changeset [1898] by curtis
Rethrow exceptions as FormatException rather than printStackTrace.
12:34 Changeset [1897] by curtis
Add closing paren to ZCT size mismatch exceptions.
12:07 Changeset [1896] by curtis
Suppress exception when attempting to obtain thumbnail.
08:21 Changeset [1895] by curtis
Version with Melissa's recent changes.
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