Timeline


and

01/13/07:

14:12 TracTicketsCustomFields created by trac
14:12 WikiDeletePage created by trac
14:12 TracBackup created by trac
14:12 TracTickets created by trac
14:12 TracInstall created by trac
14:12 TracTimeline created by trac
14:12 TracRss created by trac
14:12 WikiPageNames created by trac
14:12 TracImport created by trac
14:12 TracFastCgi created by trac
14:12 TracIni created by trac
14:12 WikiRestructuredText created by trac
14:12 TracPermissions created by trac
14:12 TracSupport created by trac
14:12 WikiHtml created by trac
14:12 TracSyntaxColoring created by trac
14:12 TracModPython created by trac
14:12 WikiFormatting created by trac
14:12 TracBrowser created by trac
14:12 WikiRestructuredTextLinks created by trac
14:12 TracNotification created by trac
14:12 TracUnicode created by trac
14:12 TracAccessibility created by trac
14:12 TracEnvironment created by trac
14:12 TracReports created by trac
14:12 WikiMacros created by trac
14:12 TracCgi created by trac
14:12 CamelCase created by trac
14:12 WikiProcessors created by trac
14:12 TracSearch created by trac
14:12 TracQuery created by trac
14:12 WikiStart created by trac
14:12 TracLogging created by trac
14:12 SandBox created by trac
14:12 TracStandalone created by trac
14:12 TracLinks created by trac
14:12 TracPlugins created by trac
14:12 TracRoadmap created by trac
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14:12 TracInterfaceCustomization created by trac
14:12 WikiNewPage created by trac

01/12/07:

17:12 Changeset [2093] by nor
Moving Nikon over to Compressor interface
16:39 Changeset [2092] by nor
Update for Packbits Compressor
16:38 Changeset [2091] by nor
Style
16:38 Changeset [2090] by nor
Update for PackbitsCompressor
16:38 Changeset [2089] by nor
Moving Packbits over to Compressor interface
15:28 Changeset [2088] by curtis
Use getCurrentFile instead of raw ID for metadata window title.
15:26 Changeset [2087] by curtis
Use getCurrentFile instead of raw ID when possible for window title.
15:12 Changeset [2086] by melissa
Save previous server and user name; use these as the default when logging …
15:00 Changeset [2085] by melissa
* Fixed a bug in the importer that caused remote import + stitched files …
14:54 Changeset [2084] by curtis
Change "Filename" metadata parameter name to "OME address" or "URL" …
14:45 Changeset [2083] by nor
- Added AdobeDeflateCompressor.java as part of the files using Compressor …
14:25 Changeset [2082] by curtis
Make filename the first piece of metadata in the table.
14:17 Changeset [2081] by curtis
Whitespace.
14:16 Changeset [2080] by curtis
Separate local file, OME server, and Internet into separate plugin …
14:10 Changeset [2079] by melissa
Fixed bug with long directory listings.
13:01 Changeset [2078] by melissa
Tweaked RAUrl and several readers to provide better support for reading …
12:44 Changeset [2077] by nor
Corrected typo (LZW->LZO)
12:38 Changeset [2076] by nor
- Modified to use LZOCompressor as part of Compressor interface changes. - …
12:36 Changeset [2075] by nor
Javadoc fix (removed @param from method with no params)
12:35 Changeset [2074] by nor
Style fix…
12:28 Changeset [2073] by nor
Moving loci.formats.Compression.lzoUncompress to the Compressor interface.

01/11/07:

12:22 Changeset [2072] by curtis
Fill in tooltips for min and max color value sliders.
09:00 Changeset [2071] by nor
Changes to API and "Object-orientation" due to BaseCompressor.java, also …
08:59 Changeset [2070] by nor
Base Compressor class, providing default implementations for several …
08:57 Changeset [2069] by nor
Style fixes, bug fixes (thanks Curtis!)

01/10/07:

18:25 Changeset [2068] by curtis
Add min and max color scaling for intensity plot.
16:23 Changeset [2067] by melissa
Finally fixed bug in RGB conversion.
14:03 Changeset [2066] by nor
changed to use Base64Encode class with Compressor interface
13:58 Changeset [2065] by nor
Windows batch files for useful testing utilities.
13:56 Changeset [2064] by melissa
Copied server sanity logic from …
13:48 Changeset [2063] by nor
Style fixes
13:44 Changeset [2062] by nor
Add test method
13:40 Changeset [2061] by nor
Encoder for Base64 using the Compressor interface
11:04 Changeset [2060] by nor
Updated to use LZWCompressor.
10:52 Changeset [2059] by melissa
Improved RGB stack handling, so min/max adjustment is done before RGB …
10:48 Changeset [2058] by nor
Implements LZW compression using the Compressor interface.
10:47 Changeset [2057] by nor
Compression interface, for implementing various compression schemes such …
10:41 Changeset [2056] by nor
Style changes
10:09 Changeset [2055] by melissa
Be more flexible about how server name is specified - fill in " http://" …
10:02 Changeset [2054] by melissa
Star out password field in login box.
09:59 Changeset [2053] by melissa
Added new IFormatReader API method: String getCurrentFile(). If you need …
08:46 Changeset [2052] by melissa
* Fixed memory bug in Zeiss LSM. * Fixed bug with 2-channel BufferedImage …

01/09/07:

14:37 Changeset [2051] by melissa
Fix display issue with 16 and 32 bit data (fixes Glen MacDonald's OIF …
13:00 Changeset [2050] by melissa
Fixed LIF reader to label the first series correctly.
12:30 Changeset [2049] by melissa
* Fixed several bugs in ND2 reader * Tweaked OMEReader.initFile to allow …

01/08/07:

18:22 Changeset [2048] by curtis
Pass Z and T sizes properly to View5D.
17:56 Changeset [2047] by curtis
Avoid problem with java.awt.SplashScreen in Java 1.6.
13:49 Changeset [2046] by melissa
* Added options to importer to allow downloading from OME or other …
10:19 Changeset [2045] by melissa
Added OMEReader, a subclass of FormatReader for reading OME images. …

01/06/07:

16:34 Changeset [2044] by nor
Added comment to BitBuffer.java
16:19 Changeset [2043] by nor
added skipBits(long bits) method.

01/05/07:

16:40 Changeset [2042] by curtis
Update release date.
16:33 Changeset [2041] by curtis
Use new FormatReader.setDebug method instead of setting flag directly.
16:32 Changeset [2040] by curtis
Add accessor methods for debug and debugLevel parameters.
16:10 Changeset [2039] by curtis
Style fixes.
16:08 Changeset [2038] by sorber
(removed print statements)
15:51 Changeset [2037] by curtis
Avoid shadowed fields.
15:49 Changeset [2036] by curtis
Whitespace.
15:49 Changeset [2035] by curtis
Whitespace.
15:48 Changeset [2034] by curtis
Avoid using deprecated readLine method (just throw IOException, since …
15:44 Changeset [2033] by curtis
Eliminate totally squashed exceptions (print stack trace if debug flag is …
15:43 Changeset [2032] by sorber
Dynamic selection of multiple objects with TransientSelectBox
15:08 Changeset [2031] by melissa
Only print stack traces if the 'debug' flag is set.
12:27 Changeset [2030] by melissa
* Added feature to read files over HTTP. * Updated "what's new" list
09:22 Changeset [2029] by melissa
Tweaked isThisType(String, boolean) to check if there is an XML file in …

01/04/07:

21:55 Changeset [2028] by nor
Added comments, test method
21:54 Changeset [2027] by nor
Added write(String bitString) method
17:33 Changeset [2026] by chris
Browser: 1) references to getSizeC() in CacheManager changed to …
17:27 Changeset [2025] by curtis
First cut at disallowing mutually exclusive import options.
17:12 Changeset [2024] by sorber
Added shading to TransientSelectBox (rgb -> rgba for all OverlayObjects' …
16:59 Changeset [2023] by chris
Browser: 1) Better support for cache/no cache, but RAM thing isn't there …
16:06 Changeset [2022] by chris
Browser: 1) changed all references to filestitcher in cachemanager to be …
15:24 Changeset [2021] by chris
Browser: 1) OptionsWindow now functional for both FileStitcher and …
15:10 Changeset [2020] by curtis
Fix problem where dev-compile always compiled all files.
14:45 Changeset [2019] by curtis
Fix bug where background slice loading thread took 100% CPU.
14:36 Changeset [2018] by curtis
Fix bug where "View stack with" preference was not properly set to old …
14:04 Changeset [2017] by chris
Browser: 1) something here must have changed, but I forget at this point. …
13:48 Changeset [2016] by melissa
* Force LeicaReader.initFile to close open files. * Make sure ReaderTest …
13:15 Changeset [2015] by chris
Browser: 1) annoying ass debug messages quashed!
13:12 Changeset [2014] by chris
Browser: 1)reverted getTempSlice(index) to functional method.
13:08 Changeset [2013] by curtis
One email link that Melissa missed.
12:51 Changeset [2012] by chris
Browser: 1) Multiple threads being created is fixed... now there's only …
11:37 Changeset [2011] by melissa
Tweaked support for planar TIFF files (fixes issue with 2-channel LSM …
10:02 Changeset [2010] by melissa
* Tweaked OIB and OIF metadata parsing so that the output looks the same. …

01/03/07:

15:49 Changeset [2009] by chris
Browser: 1) fixed it so that random filepatterns will be displayed as per …
14:33 Changeset [2008] by melissa
Allow file name switching.
14:30 Changeset [2007] by chris
Browser: 1) fixed bug that index of image was off by -1 2) fixed indicator …
13:49 Changeset [2006] by melissa
Fix to allow file name switching.
13:05 Changeset [2005] by chris
Fix previous getEffectiveSizeC fix.
12:54 Changeset [2004] by melissa
More changes to allow file name switching.
12:42 Changeset [2003] by chris
Clean up getEffectiveSizeC implementations.
12:10 Changeset [2002] by melissa
Fixed to allow the output file name to be changed before the last plane …
12:01 Changeset [2001] by melissa
Added close method to IFormatWriter API; tweaked most readers to either …
11:51 Changeset [2000] by melissa
Fixed bug in isThisType.
10:53 Changeset [1999] by chris
PrairieReader: 1) reverted code around line 214 back to what it was …
10:45 Changeset [1998] by chris
PrairieReader: 1) slight fix to avoid infinite loop I created around line …
10:35 Changeset [1997] by chris
PrairieReader: 1) added code at line 214 to preclude the substring method …
09:11 Changeset [1996] by melissa
Added support for Prairie TIFF files.

01/02/07:

17:25 Changeset [1995] by sorber
Began working on transient box for selecting multiple overlays.
16:13 Changeset [1994] by curtis
Tweak.
15:52 Changeset [1993] by curtis
Add stack reordering logic (to XYZCT) for View5D display option.
14:20 Changeset [1992] by curtis
Use new ImageJ v1.38f functionality to temporarily disable …
13:41 Changeset [1991] by melissa
Sped up initialization and tweaked dimension detection logic to be more …
13:40 Changeset [1990] by melissa
Fixed bug in findNode that caused it to incorrectly return null values.
12:37 Changeset [1989] by curtis
Whitespace.
12:35 Changeset [1988] by curtis
Whitespace.
12:33 Changeset [1987] by curtis
Whitespace.
08:19 Changeset [1986] by melissa
Check for missing "valid bit count" field.

12/29/06:

15:59 Changeset [1985] by chris
Importer/Browser: 1) non-stitched files now work 2) actually passes the …
14:22 Changeset [1984] by chris
Browser: 1) fix of channels being off bug
14:01 Changeset [1983] by chris
Browser: 1) primitive cache toggling added. Currently unable to warn if …
13:10 Changeset [1982] by chris
Importer/Browser: 1) merging RGB almost works, although there's a bug with …
12:56 Changeset [1981] by chris
Importer: 1) Changed to circumvent loading of ImagePlus if 4DBrowser is …

12/28/06:

16:36 Changeset [1980] by chris
Importer: 1) changes to use a different constructer that just accepts id …
15:21 Changeset [1979] by chris
importer: 1) disabled all browser capability for the time being because …
13:08 Changeset [1978] by chris
Importer: 1) reverted mostly, problem remains that the importer itself …
11:16 Changeset [1977] by chris
Importer: 1) Debugging, something's wierd.
11:03 Changeset [1976] by chris
Importer: 1) Should now use updated constructer to show in 4DBrowser when …

12/27/06:

14:27 Changeset [1975] by sorber
hexToColor now throws exception.
14:10 Changeset [1974] by sorber
LoadOverlays working.

12/22/06:

16:33 Changeset [1973] by curtis
Fix bug in findNode causing an OIB dataset from Stefan Terjung not to read …
15:10 Changeset [1972] by curtis
Tweak what's new list.
14:42 Changeset [1971] by curtis
Only show View5D on the list if it is available.
14:35 Changeset [1970] by curtis
Ha, changing my mind again! We can fix the broken 4D Data Browser for now …
14:30 Changeset [1969] by curtis
Ugh, OME Plugin is broken right now anyway (changes to the 4D Data Browser …
14:27 Changeset [1968] by curtis
Leave "OME Plugin" on the list for now.
13:43 Changeset [1967] by curtis
Add simple API for adding and removing reader and writer classes from …
10:38 Changeset [1966] by melissa
Include notes on recent API additions.
08:32 Changeset [1965] by melissa
Fixed ordering for Image5D (hopefully). We can't call swapDimensions, …

12/21/06:

14:36 Changeset [1964] by curtis
Comment out 4D Data Browser support, until Chris adds it.
14:29 Changeset [1963] by curtis
Swap dimensions to XYCZT order if using Image5D for display.
13:45 Changeset [1962] by curtis
Update what's new list.
12:30 Changeset [1961] by curtis
Tweak in case used files is still null somehow.
12:24 Changeset [1960] by curtis
Handle cases where file pattern detector fails (returns null).
12:14 Changeset [1959] by curtis
Clean up getUsedFiles -- never wrap results with getMappedId. Still needs …
11:51 Changeset [1958] by melissa
Fixed openBytes bug.

12/20/06:

17:55 Changeset [1957] by curtis
Workaround in case used files list is null.
17:12 Changeset [1956] by curtis
Turn off debugging flag.
17:10 Changeset [1955] by curtis
Fix print statement.
17:10 Changeset [1954] by curtis
Bugfixes.
16:56 Changeset [1953] by curtis
Retool ReaderTest to avoid weird use of static variables; add comments …
16:42 Changeset [1952] by curtis
Remove debugging statement.
16:40 Changeset [1951] by curtis
* Fix bug causing "Out of order access or missing metadata 'sizeC'." …

12/19/06:

16:46 Changeset [1950] by curtis
Make reader tester build list more quickly (no checks for used files), …
14:50 Changeset [1949] by curtis
More javadoc tweaking.
14:47 Changeset [1948] by curtis
Add package description for loci.formats.test; update ReaderTest javadoc.
14:42 Changeset [1947] by curtis
Change debugging logic to call new FormatReader.debug(String) method. …
13:55 Changeset [1946] by melissa
Reworked testing framework to use JUnit 3.8 (Java 1.4).
13:48 Changeset [1945] by curtis
* Fix bugs in -range command line parameter. * Change behavior so that end …
12:50 Changeset [1944] by curtis
Clean up testRead command line argument documentation.
12:18 Changeset [1943] by melissa
Added "-debug" command-line option to turn on debugging statements.
08:27 Changeset [1942] by melissa
Added multi-series support for OIB.

12/18/06:

15:24 Changeset [1941] by curtis
* Add file stitching pattern confirmation dialog, so that user can tweak …
15:10 Changeset [1940] by curtis
Fix bugs in multi-series parameter population causing initFile to be …
11:00 Changeset [1939] by melissa
Bugfixes.

12/14/06:

15:04 Changeset [1938] by melissa
Fixed FileStitcher to respect multi-series files.
13:50 Changeset [1937] by melissa
Removed duplicate calibration code and tweaked Image5D/View5D integration.
13:03 Changeset [1936] by curtis
Eliminate unnecessary data files list.
12:20 Changeset [1935] by curtis
Correct parameter name in javadoc.
12:15 Changeset [1934] by curtis
Make Slim Plotter work with single-channel lifetime data.
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