Timeline
02/19/07:
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- 16:29 WikiFormatting edited by
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- 16:29 WikiMacros edited by
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- 11:35 Changeset [2297] by
- Use stored sizeC value, rather than assuming sizeC is 1 or 3.
- 11:34 Changeset [2296] by
- Removed broken case logic for floating point images.
- 09:36 Changeset [2295] by
- Fixed multi-series detection logic to account for compression.
02/16/07:
- 20:22 Changeset [2294] by
- Notebook: tiffdata parsing crap should all work fine, though not …
- 17:07 Changeset [2293] by
- Notebook: few minor corrections and Notebook now fully supports multiple …
- 15:08 Changeset [2292] by
- Fixed channel min/max for multi-series formats; added a note about new …
- 14:42 Changeset [2291] by
- Added new channel min/max logic.
- 10:59 Changeset [2290] by
- Fixed getRGBChannelCount and getEffectiveSizeC.
- 10:36 Changeset [2289] by
- Fixed a subtle bug in metadata parsing.
- 08:19 Changeset [2288] by
- - Added "int getRGBChannelCount(String)" to IFormatReader. - Enhanced …
02/15/07:
- 20:06 Changeset [2287] by
- Notebook: support for multiple pixels in weird order should be in place I …
- 19:37 Changeset [2286] by
- Notebook: added capacity to find lowest ID number in pixels. no longer …
- 19:30 Changeset [2285] by
- Notebook: Adding support for multiple pixel thumbnails, commiting what I …
- 15:41 Changeset [2284] by
- New classes for drawing polylines. Typos and small changes.
- 14:31 Changeset [2283] by
- Fix critical OME-TIFF conversion bug (insert required TiffData element).
- 14:11 Changeset [2282] by
- Fixed bug which allowed multiple freeforms to become selected as each was …
- 14:10 Changeset [2281] by
- Nicer error message when ij.jar is not found.
- 14:07 Changeset [2280] by
- Better error messages in testRead if OME-XML generation fails (in …
- 14:05 Changeset [2279] by
- Nicer error message if QTJava is not found.
- 14:02 Changeset [2278] by
- Update JAR classpaths.
- 13:42 Changeset [2277] by
- Better exceptions when libraries are missing.
- 13:42 Changeset [2276] by
- Instantiate OMEReader directly if we are downloading from OME (since …
- 13:30 Changeset [2275] by
- Remove OMEReader from the readers list -- easier than wrapping all …
- 13:25 Changeset [2274] by
- Throw a nicer exception if OME-Java is not present.
- 13:25 Changeset [2273] by
- Be more aggressive about trapping ND2 exceptions when the jai_imageio.jar …
- 12:56 Changeset [2272] by
- Fix compile error.
- 08:20 Changeset [2271] by
- Fixed compile error.
02/14/07:
- 17:08 Changeset [2270] by
- Notebook: 1) delete old tif file if it exists before using TiffWriter to …
- 16:56 Changeset [2269] by
- Notebook: more efficient saving of tiff files through TiffWriter instead …
- 16:42 Changeset [2268] by
- Use getChildNodes instead of old getChildren signature.
- 16:42 Changeset [2267] by
- Switch to new setPixels signature.
- 16:40 Changeset [2266] by
- Change method signatures from OMEXMLNode.getChildren to …
- 16:32 Changeset [2265] by
- Change setPixels to have separate Image and Pixels indices.
- 15:38 Changeset [2264] by
- Better internal ID generation (based on element names instead of global).
- 14:28 Changeset [2263] by
- Assume links starting with http: are web links rather than internal.
- 14:20 Changeset [2262] by
- Fix Windows browser launching.
02/13/07:
- 16:58 Changeset [2261] by
- Rearrange GUI to accommodate interactive color table; add ability to …
- 16:25 Changeset [2260] by
- fixed improper sizeC value
- 15:24 Changeset [2259] by
- Cleaned up logic of mouseDown method
- 14:56 Changeset [2258] by
- Fixed bug - close() didn't reset image counter.
- 09:31 Changeset [2257] by
- Fixed channel min/max computation and retrieval for RGB TIFFs.
02/12/07:
- 12:54 Changeset [2256] by
- * Absolves the responsibility of handling min/max calculation from the …
02/09/07:
- 13:54 Changeset [2255] by
- * Fixed OIB axis size bug. * Fixed NPEs caused by …
- 13:15 Changeset [2254] by
- No more single-node freeforms. They are either never constructed or …
- 12:36 Changeset [2253] by
- Fixed core metadata. BMP, MNG, EPS, PICT, PNG, JPG, and ImageJ-supported …
- 11:58 Changeset [2252] by
- Better handling of ignoreColorTable flag - fixes files in data/leica/joel.
- 09:53 Changeset [2251] by
- Don't display OME password in the status bar. Changed login dialog to …
02/08/07:
- 19:24 Changeset [2250] by
- Added additional getDistSegWt method to accept double precision arrays.
- 19:18 Changeset [2249] by
- Changed FreeformTool to use pixel coordinates instead of domain …
- 18:10 Changeset [2248] by
- Notebook: Capability to merge saved versions of companion and original …
- 17:07 Changeset [2247] by
- Notebook: Capable now of saving wierd formats (if they're openable by …
- 14:06 Changeset [2246] by
- Misc small changes: removed visible flag from TransientSelect Box, …
- 10:27 Changeset [2245] by
- Fixed scanline padding problem with RGB AVI files.
- 08:53 Changeset [2244] by
- Updated exporter plugin to (hopefully) work with macros.
02/07/07:
- 18:02 Changeset [2243] by
- Notebook: Companion files and merging completely in place, should work …
- 17:52 Changeset [2242] by
- 2007 Feb 7 release of LOCI Tools.
- 17:52 Changeset [2241] by
- 2007 Feb 7 release of LOCI Tools.
- 17:51 Changeset [2240] by
- 2007 Feb 7 release of LOCI Tools.
- 17:51 Changeset [2239] by
- 2007 Feb 7 release of LOCI Tools.
- 17:50 Changeset [2238] by
- 2007 Feb 7 release of LOCI Tools.
- 17:50 Changeset [2237] by
- 2007 Feb 7 release of LOCI Tools.
- 17:49 Changeset [2236] by
- 2007 Feb 7 release of LOCI Tools.
- 17:49 Changeset [2235] by
- 2007 Feb 7 release of LOCI Tools.
- 17:48 Changeset [2234] by
- Relative paths are screwed up.
- 17:47 Changeset [2233] by
- 2007 Feb 7 release of LOCI Tools.
- 17:46 Changeset [2232] by
- Add tags and branches directories.
- 17:25 Changeset [2231] by
- Include loci.ome.upload and loci.ome.util package trees in VisBio and LOCI …
- 17:24 Changeset [2230] by
- Change loci.ome package references to loci.ome.util.
- 17:20 Changeset [2229] by
- Fix package statements; ignore *.class files.
- 17:11 Changeset [2228] by
- Move OME helper classes into OME utility package.
- 17:10 Changeset [2227] by
- OME utility classes package.
- 15:18 Changeset [2226] by
- Turn off debugging flag.
- 15:11 Changeset [2225] by
- Add release date to what's new file.
- 15:10 Changeset [2224] by
- Tweak comment.
- 14:55 Changeset [2223] by
- Add OMEXMLNode.getChildren() method.
- 14:08 Changeset [2222] by
- Set value of BigEndian to false.
- 10:08 Changeset [2221] by
- Added note about new RandomAccessStream feature.
- 09:59 Changeset [2220] by
- Attempt to free up some memory.
- 09:36 Changeset [2219] by
- Bugfixes.
02/05/07:
- 11:17 Changeset [2218] by
- Fix NumberFormatException bug; eliminate catch-all exception handling.
- 11:13 Changeset [2217] by
- Use Double.parseDouble instead of Integer.parseInt during metadata …
- 11:04 Changeset [2216] by
- Fix StringIndexOutOfBoundsException and NullPointerException in …
- 10:57 Changeset [2215] by
- Fix NullPointerException in LeicaReader.isThisType.
02/02/07:
- 18:09 Changeset [2214] by
- oops, forgot to add the new Merger file.
- 18:08 Changeset [2213] by
- Notebook: Added merger gui and some logic, but no merging actually takes …
- 14:54 Changeset [2212] by
- Use FormatReader.debug in ReaderTest.
- 13:25 Changeset [2211] by
- Main method should construct a new Base64Encoder.
- 08:30 Changeset [2210] by
- Fixed memory issue with file cache.
- 07:55 Changeset [2209] by
- Tweaked dimension ordering.
02/01/07:
- 17:56 Changeset [2208] by
- Notebook: ability to save ".meta" extension companion OME-xml files added.
- 17:36 Changeset [2207] by
- MetadataNotebook: New logic for opening files, independent of file …
- 16:56 Changeset [2206] by
- fixed bug where metadata not displayed when filestitching
- 16:53 Changeset [2205] by
- Fix compile error.
- 16:48 Changeset [2204] by
- Remove bounds sanity checking from file pattern (until after the release).
- 16:48 Changeset [2203] by
- List of what's new for the forthcoming release.
- 16:01 Changeset [2202] by
- Remove debugging statements.
- 16:00 Changeset [2201] by
- Fix bug in domainToPixel (use 0 instead of Double.NaN for missing axes).
- 15:35 Changeset [2200] by
- Added logic to RandomAccessStream that keeps track of how many files we …
- 15:23 Changeset [2199] by
- Totally untested new domainToPixel method.
- 14:12 Changeset [2198] by
- Add toString method for Location.
- 12:33 Changeset [2197] by
- Added some logic to deal with datasets like …
- 09:32 Changeset [2196] by
- Close abandoned open files.
- 08:58 Changeset [2195] by
- Use new ConfigEntry class to store data from a config file (instead of …
01/31/07:
- 18:10 Changeset [2194] by
- Fix possible NullPointerException (maybe?).
- 15:43 Changeset [2193] by
- Build used files list lazily, to avoid calling initFile on every …
- 14:16 Changeset [2192] by
- Be more thorough catching problems with loading reader classes; print …
01/30/07:
- 16:58 Changeset [2191] by
- Screenshot.
- 16:48 Changeset [2190] by
- Disable text field and fill checkbox for non-text, non-fillable objs.
- 15:01 Changeset [2189] by
- Use dashes rather than colons in log file.
- 14:55 Changeset [2188] by
- Tweak javadocs.
- 13:33 Changeset [2187] by
- First cut at making ND2 work without JAI Image I/O Tools in classpath.
- 13:04 Changeset [2186] by
- Added note on new close(boolean) method and unit testing.
- 12:53 Changeset [2185] by
- Disable more options during conversion. NOTE: r2183 actually contains …
- 12:15 Changeset [2184] by
- Gracefully handle canceled OMETablePanel.
- 11:48 Changeset [2183] by
- Added OME image browser to VisBio. Also moved much of the connection and …
- 09:11 Changeset [2182] by
- * Added new API method to IFormatReader - "void close(boolean)" - if the …
01/29/07:
- 15:56 Changeset [2181] by
- Soften "You need to install..." messages a little.
- 15:49 Changeset [2180] by
- Use readFully instead of read, where appropriate.
- 15:44 Changeset [2179] by
- Only check for a JPEG-2000 reader once.
- 15:20 Changeset [2178] by
- Update copyrights: changes for 2007, add missing authors, tweak some …
- 15:06 Changeset [2177] by
- Add main method, shell script, and batch file for testing Bio-Formats …
- 14:31 Changeset [2176] by
- Pass currentId to getMetadataStore to avoid infinite recursion.
- 14:15 Changeset [2175] by
- Close opened header files.
- 14:04 Changeset [2174] by
- Use com.sun.media.imageio.disableCodecLib instead of …
- 13:53 Changeset [2173] by
- Set system property to force pure Java JPEG-2000 instead of native codec.
- 12:42 Changeset [2172] by
- Don't catch Throwable; only set the noPOI flag if ReflectedUniverse …
- 10:33 Changeset [2171] by
- Close files opened by isThisType.
01/26/07:
- 16:48 Changeset [2170] by
- Enabled dragging multiple objects.
- 16:48 Changeset [2169] by
- Moved used files logic, so as not to interfere with image count …
- 16:32 Changeset [2168] by
- Hopefully fixed FileStitcher to retrieve used files list from each …
- 15:56 Changeset [2167] by
- Corrected inaccuracy in getUsedFiles.
- 13:51 Changeset [2166] by
- Removed debugging statement (oops).
- 13:50 Changeset [2165] by
- Make sure we use the absolute path to the root data directory.
- 13:32 Changeset [2164] by
- Added method to convert from domain to pixel coordinates
01/25/07:
- 14:58 Changeset [2163] by
- Added JPEGCompressor.java using the Compressor interface, removed …
- 10:47 Changeset [2162] by
- Remove explicit garbage collection call.
- 10:46 Changeset [2161] by
- Tweak documentation.
- 10:02 Changeset [2160] by
- Add configuration files as they're found.
- 07:35 Changeset [2159] by
- Fixed remainder of cases where files were opened using the relative path …
01/24/07:
- 15:00 Changeset [2158] by
- Added new command line option to ReaderTest that automatically generates …
- 10:36 Changeset [2157] by
- Fix to allow filenames with spaces - requires filename to be enclosed in …
- 10:15 Changeset [2156] by
- Reworked configuration file structure for testing framework. Instead of …
01/23/07:
- 13:23 Changeset [2155] by
- Removed Plane2D - the same functionality is provided by BufferedImages.
- 10:36 Changeset [2154] by
- Obey the dataset ID, if specified. If the dataset ID is not null, then …
- 10:01 Changeset [2153] by
- Cleaned up ZVI metadata - string values are no longer truncated.
- 08:44 Changeset [2152] by
- Make sure series names show up in series chooser dialog.
01/22/07:
- 15:30 Changeset [2151] by
- Added OME-CA files to bad files list.
- 15:27 Changeset [2150] by
- Changed initFile to check if id is the array returned by …
- 13:23 Changeset [2149] by
- Fixed bug causing two images to be created.
- 12:40 Changeset [2148] by
- Call initFile with the absolute path name.
- 12:17 Changeset [2147] by
- Fixed to allow arguments with escaped spaces.
- 12:16 Changeset [2146] by
- - Updated ImageUploader to use loci.ome.upload API. - Updated OMEImage to …
- 12:11 Changeset [2145] by
- Fixed NullPointerException.
- 08:30 Changeset [2144] by
- Fixed off-by-one bug in initMetadata; tweaked initFile to return if the …
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