Timeline


and

03/14/07:

17:06 Changeset [2455] by curtis
Clean up comments, style and whitespace.
16:22 Changeset [2454] by curtis
Add status update hooks to loci.formats.ome.Uploader logic.
16:11 Changeset [2453] by curtis
Add event for listening to status updates from format readers and writers. …
14:58 Changeset [2452] by curtis
Remove note about obsolete bad-files.txt.
14:55 Changeset [2451] by curtis
Package description for loci.formats.codec package.
14:54 Changeset [2450] by curtis
Move compression/decompression logic into new loci.formats.codec package.
13:46 Changeset [2449] by curtis
Ignore *.class.
13:45 Changeset [2448] by curtis
Move MultiLUT into loci.apps package.
13:44 Changeset [2447] by curtis
No need to keep maintaining this package.
11:38 Changeset [2446] by curtis
Only upload data once per dataset.
11:33 Changeset [2445] by curtis
Whitespace.
11:31 Changeset [2444] by curtis
Tweak comments.
11:25 Changeset [2443] by curtis
Tweak javadoc.
11:24 Changeset [2442] by curtis
Move rasterToPosition, positionToRaster
11:23 Changeset [2441] by curtis
OMEUploader should work, though events still aren't worked out.
11:17 Changeset [2440] by curtis
Remove old batch file.
11:15 Changeset [2439] by curtis
Remove old batch files.
11:14 Changeset [2438] by curtis
Move Bits.swap utility methods into DataTools.
07:51 Ticket #1 (Leica Reader openBytes() Exception) closed by melissa
fixed
07:40 Changeset [2437] by melissa
Implemented openBytes(String, int, byte[]) in LeicaReader.
05:42 Ticket #1 (Leica Reader openBytes() Exception) created by callan
The Leica reader currently throws and exception when the …

03/13/07:

18:26 Changeset [2436] by curtis
Tweak.
18:25 Changeset [2435] by curtis
Add Windows batch file versions of command line tools.
18:03 Changeset [2434] by curtis
Remove omeul from VisBio distribution.
18:01 Changeset [2433] by curtis
Remove old scripts.
17:56 Changeset [2432] by curtis
Add LOCI command line tools.
17:47 Changeset [2431] by sorber
Polyline last node highlights on mouse-over.
17:03 Changeset [2430] by curtis
Move static FormatReader methods to new FormatTools class. The rationale …
16:32 Changeset [2429] by sorber
Replaced instances of deprecated HSSF.setCellValue(String) method.
16:19 Changeset [2428] by sorber
Basic export overlays to .xls format.
10:39 Changeset [2427] by melissa
Improved macro propagation logic.

03/12/07:

16:02 Changeset [2426] by curtis
More explicit comment about pixelSizeX/Y issue.
14:06 Changeset [2425] by melissa
First attempt at executing macros on a virtual stack.
09:49 Changeset [2424] by melissa
Various bugfixes - can now choose not to cache images.
08:24 Changeset [2423] by melissa
Tweaked javadoc.

03/09/07:

15:13 Changeset [2422] by melissa
Changed OMEXMLMetadataStore.setDimensions to populate PixelSizeX if it is …

03/08/07:

15:12 Changeset [2421] by melissa
Fixed compiler error.
15:02 Changeset [2420] by melissa
More metadata enhancements.
11:15 Changeset [2419] by curtis
Whitespace.
11:15 Changeset [2418] by curtis
Whitespace.
11:04 Changeset [2417] by curtis
Add a couple of recent things to the what's new list.
10:50 Changeset [2416] by curtis
Use "reader" instead of "readers[0]", since readers might be null.
10:42 Changeset [2415] by melissa
Populate more MetadataStore fields.
10:40 Changeset [2414] by melissa
Print a warning if a method that doesn't take the 'id' parameter is called …
10:20 Changeset [2413] by curtis
Reenable metadata filtering, remove some superfluous lines.
09:40 Changeset [2412] by melissa
Removed superfluous calls to close() and setColorTableIgnored.

03/07/07:

16:41 Changeset [2411] by curtis
Update to ImageJ v1.38l.
16:14 Changeset [2410] by melissa
Added hack to populate missing pixel sizes.
15:48 Changeset [2409] by curtis
2007 Mar 07 release of LOCI Tools
15:48 Changeset [2408] by curtis
2007 Mar 07 release of LOCI Tools
15:48 Changeset [2407] by curtis
2007 Mar 07 release of LOCI Tools
15:48 Changeset [2406] by curtis
2007 Mar 07 release of LOCI Tools
15:48 Changeset [2405] by curtis
2007 Mar 07 release of LOCI Tools
15:48 Changeset [2404] by curtis
2007 Mar 07 release of LOCI Tools
15:48 Changeset [2403] by curtis
2007 Mar 07 release of LOCI Tools
15:48 Changeset [2402] by curtis
2007 Mar 07 release of LOCI Tools
15:43 Changeset [2401] by curtis
Only put image name in label if Image Name attribute is non-null.
15:01 Changeset [2400] by curtis
No need to use separate ImageReader.
15:00 Changeset [2399] by curtis
Fix bug in channel separator caching with multiple series.
14:59 Changeset [2398] by curtis
Remove unnecessary variable.
12:33 Changeset [2397] by melissa
Use a separate ImageReader to load the thumbnails.
11:25 Changeset [2396] by curtis
Restored commented out conditional.
11:05 Changeset [2395] by curtis
Add background series preview thumbnail loader to what's new list.
11:02 Changeset [2394] by curtis
Thumbnail background loader works…

03/06/07:

17:52 Changeset [2393] by sorber
Can erase polyline nodes. Add indicator for closed polyline. Polyline …
17:48 Changeset [2392] by curtis
Initial implementation of background thumbnail loader.
13:34 Changeset [2391] by melissa
Updated list of new stuff for today's release.
12:20 Changeset [2390] by melissa
Fixed problem with ND2 BufferedImage deconstruction.
11:55 Changeset [2389] by melissa
Fixed issue with sizeC > 4.
09:18 Changeset [2388] by melissa
Always use AWT for BufferedImage scaling.
08:42 Changeset [2387] by melissa
Added new test to check that the used file list is sane.
08:39 Changeset [2386] by melissa
Minor bugfixes.
08:39 Changeset [2385] by melissa
Copied blank image logic to openThumbImage and openThumbBytes.

03/05/07:

12:59 Changeset [2384] by melissa
Added support for Micro-Manager file format.
12:57 Changeset [2383] by melissa
Updated to use getRGBChannelCount.
10:15 Changeset [2382] by melissa
Miscellaneous bugfixes.
10:15 Changeset [2381] by melissa
Added thumbnail dimension tests.
08:08 Changeset [2380] by melissa
Fixed bug reported by Claude Bonnard.

03/02/07:

13:32 Changeset [2379] by melissa
Convert inches to um, instead of cm.
13:28 Changeset [2378] by curtis
Add missing(?) break statement.
13:27 Changeset [2377] by melissa
- Changed BaseTiffReader.initStandardMetadata to throw IOException. - …
11:09 Changeset [2376] by melissa
More thorough metadata parsing.
08:53 Changeset [2375] by melissa
Merged Andor and Fluoview readers (since they are the same format). Also …

03/01/07:

18:12 Changeset [2374] by sorber
Select and drag individual polyline nodes.
15:59 Changeset [2373] by curtis
Better slice labels (display ZCT coords), fix some bugs.
15:02 Changeset [2372] by sorber
Provisional fix of indexing 0/1 bug for loading, saving overlays.
14:09 Changeset [2371] by melissa
Uncommented debugging statements.
14:09 Changeset [2370] by melissa
Fixed NPE when trying to open PerkinElmer image files.
14:06 Changeset [2369] by curtis
Add RGB channel count and RGB sanity test to testRead core metadata …
12:35 Changeset [2368] by melissa
Fixed compile errors.
12:30 Changeset [2367] by melissa
Changed OME-XML reflection logic to reflect new package structure.
12:23 Changeset [2366] by melissa
Fixed endianness detection and issue with 32-channel dataset.
12:09 Changeset [2365] by curtis
Load metadata from just the first file, rather than all constituent files.
12:08 Changeset [2364] by curtis
HLT_ALPHA should be final.
11:26 Changeset [2363] by curtis
Simplify math for getEffectiveSizeC and getRGBChannelCount.

02/28/07:

12:45 Changeset [2362] by curtis
2007 Feb 28 release of LOCI Tools
12:45 Changeset [2361] by curtis
2007 Feb 28 release of LOCI Tools
12:45 Changeset [2360] by curtis
2007 Feb 28 release of LOCI Tools
12:45 Changeset [2359] by curtis
2007 Feb 28 release of LOCI Tools
12:45 Changeset [2358] by curtis
2007 Feb 28 release of LOCI Tools
12:45 Changeset [2357] by curtis
2007 Feb 28 release of LOCI Tools
12:43 Changeset [2356] by curtis
2007 Feb 28 release of LOCI Tools
12:42 Changeset [2355] by curtis
2007 Feb 28 release of LOCI Tools
12:36 Changeset [2354] by curtis
2007 Feb 28 release of LOCI Tools
12:07 Changeset [2353] by curtis
What's new for 2007 Feb 28 release.
11:53 Changeset [2352] by curtis
Fix bug with restoration of "ignore color tables" option from ImageJ …
07:50 Changeset [2351] by melissa
Fixed various problems with the importer that caused the "ignore color …

02/27/07:

13:59 Changeset [2350] by curtis
Eliminate black bars in thumbnails.

02/26/07:

14:34 Changeset [2349] by curtis
Update omebf script and move into ome subpackage.
14:22 Changeset [2348] by curtis
Show middle thumbnail instead of first thumbnail; display ImageJ status …
13:40 Changeset [2347] by curtis
2007 Feb 26 release tag.
13:40 Changeset [2346] by curtis
2007 Feb 26 release tag.
13:39 Changeset [2345] by curtis
2007 Feb 26 release tag.
13:39 Changeset [2344] by curtis
2007 Feb 26 release tag.
13:39 Changeset [2343] by curtis
2007 Feb 26 release tag.
13:38 Changeset [2342] by curtis
2007 Feb 26 release tag.
13:38 Changeset [2341] by curtis
2007 Feb 26 release tag.
13:38 Changeset [2340] by curtis
2007 Feb 26 release tag.
13:31 Changeset [2339] by curtis
Add Brian to copyright dialog.
13:31 Changeset [2338] by curtis
Add release date.
12:13 Changeset [2337] by curtis
Formatting tweaks.
11:53 Changeset [2336] by melissa
One last fix - strings need to be trimmed before adding to metadata …
11:24 Changeset [2335] by melissa
Use absolute path names in initFile.

02/23/07:

17:43 Changeset [2334] by curtis
First cut at graying out File>Save and QuickSave for third party formats. …
17:16 Changeset [2333] by sorber
Polyline button .png
17:04 Changeset [2332] by sorber
During drawing, polyline start/end nodes become highlighted when mouse is …
17:02 Changeset [2331] by sorber
Enable DisplayEvent.MOUSE_MOVED events. Convert whole array of floats …
16:45 Changeset [2330] by curtis
Some style fixes.
16:08 Changeset [2329] by curtis
Fix bugs when reading raw OME-XML metadata files.
15:21 Changeset [2328] by chris
Notebook: 1) fixed problem with ZCT bioformats index mapping. if file is …
13:12 Changeset [2327] by curtis
Rearrange Bio-Formats OME logic into loci.formats.ome package.
12:28 Changeset [2326] by curtis
Fix bug in FileStitcher.getUsedFiles.
10:47 Changeset [2325] by melissa
Listed what's new for next release.
10:23 Changeset [2324] by melissa
Added thumbnails to series chooser.
10:23 Changeset [2323] by melissa
Bugfixes.

02/22/07:

17:25 Changeset [2322] by chris
Notebook: Everything to my knowledge in working order, specifically: 1) …
16:58 Changeset [2321] by curtis
Whitespace.
16:58 Changeset [2320] by curtis
Whitespace.
16:56 Changeset [2319] by curtis
Some documentation updates.
16:26 Changeset [2318] by curtis
Use getUsedFiles instead of FilePattern to group files.
16:25 Changeset [2317] by curtis
Add logic in testRead to output used files as part of core metadata.
15:48 Changeset [2316] by curtis
Force output pixels files to be in XYZCT order, as expected by OMEIS.
15:46 Changeset [2315] by curtis
Make FileStitcher.getUsedFiles smarter.
10:46 Changeset [2314] by curtis
Use picoseconds for tau unit instead of histogram bin range. Better error …
10:13 Changeset [2313] by melissa
All readers now minimally populate the LogicalChannel ST.
10:09 Changeset [2312] by melissa
ImageJ doesn't support RGB data with more than 8 bits per channel, so we …
09:59 Changeset [2311] by melissa
Added document describing how to use Bio-Formats in another application; …

02/21/07:

17:15 Changeset [2310] by chris
Notebook: SaveAs functionality added with a slightly counterintuitive …
17:11 Changeset [2309] by curtis
Use 256 MB instead of 128 MB.
15:38 Changeset [2308] by chris
Notebook: <TiffData/> Elements inserted into Pixels elements now if tiff. …
12:56 Changeset [2307] by melissa
- Added several new methods to the MetadataStore API. - Populated …
12:53 Changeset [2306] by melissa
Minor bugfixes.
12:53 Changeset [2305] by melissa
Fixed issues with uploading >8 bit and RGB data.
12:49 Changeset [2304] by melissa
Don't throw an exception if the image name wasn't specified.
10:04 Changeset [2303] by melissa
Fixed multi-series detection (for real this time).
08:36 Changeset [2302] by melissa
Set the Z, C and T values in ImageJ.

02/20/07:

12:47 Changeset [2301] by melissa
Fixed issues with downloading from OME.
11:47 Changeset [2300] by curtis
Fix more NullPointerExceptions.
11:44 Changeset [2299] by curtis
Fix NullPointerException when no file info exists.
09:36 Changeset [2298] by curtis
Update Windows browser launcher command to more robust version.

02/19/07:

16:31 WikiStart edited by curtis
(diff)
16:29 WikiDeletePage edited by trac
(diff)
16:29 TracBackup edited by trac
(diff)
16:29 TracTickets edited by trac
(diff)
16:29 TracInstall edited by trac
(diff)
16:29 TracTimeline edited by trac
(diff)
16:29 TracRss edited by trac
(diff)
16:29 WikiPageNames edited by trac
(diff)
16:29 TracImport edited by trac
(diff)
16:29 TracFastCgi edited by trac
(diff)
16:29 TracIni edited by trac
(diff)
16:29 WikiRestructuredText edited by trac
(diff)
16:29 TracPermissions edited by trac
(diff)
16:29 TracSupport edited by trac
(diff)
16:29 WikiHtml edited by trac
(diff)
16:29 TracSyntaxColoring edited by trac
(diff)
16:29 TracModPython edited by trac
(diff)
16:29 WikiFormatting edited by trac
(diff)
16:29 TracBrowser edited by trac
(diff)
16:29 WikiRestructuredTextLinks edited by trac
(diff)
16:29 TracNotification edited by trac
(diff)
16:29 TracUnicode edited by trac
(diff)
16:29 TracAccessibility edited by trac
(diff)
16:29 TracEnvironment edited by trac
(diff)
16:29 TracReports edited by trac
(diff)
16:29 WikiMacros edited by trac
(diff)
16:29 TracCgi edited by trac
(diff)
16:29 CamelCase edited by trac
(diff)
16:29 WikiProcessors edited by trac
(diff)
16:29 TracSearch edited by trac
(diff)
16:29 TracQuery edited by trac
(diff)
16:29 TracStandalone edited by trac
(diff)
16:29 TracLinks edited by trac
(diff)
16:29 TracPlugins edited by trac
(diff)
16:29 TracRoadmap edited by trac
(diff)
16:29 TracUpgrade edited by trac
(diff)
16:29 TracChangeset edited by trac
(diff)
16:29 TracAdmin edited by trac
(diff)
16:29 InterMapTxt created by trac
16:29 TracWiki edited by trac
(diff)
16:29 TracInterfaceCustomization edited by trac
(diff)
16:29 WikiNewPage edited by trac
(diff)
16:29 InterTrac created by trac
16:29 InterWiki created by trac
16:29 TracRevisionLog created by trac
16:29 TracTicketsCustomFields edited by trac
(diff)
11:35 Changeset [2297] by melissa
Use stored sizeC value, rather than assuming sizeC is 1 or 3.
11:34 Changeset [2296] by melissa
Removed broken case logic for floating point images.
09:36 Changeset [2295] by melissa
Fixed multi-series detection logic to account for compression.

02/16/07:

20:22 Changeset [2294] by chris
Notebook: tiffdata parsing crap should all work fine, though not …
17:07 Changeset [2293] by chris
Notebook: few minor corrections and Notebook now fully supports multiple …
15:08 Changeset [2292] by melissa
Fixed channel min/max for multi-series formats; added a note about new …
14:42 Changeset [2291] by melissa
Added new channel min/max logic.
10:59 Changeset [2290] by melissa
Fixed getRGBChannelCount and getEffectiveSizeC.
10:36 Changeset [2289] by melissa
Fixed a subtle bug in metadata parsing.
08:19 Changeset [2288] by melissa
- Added "int getRGBChannelCount(String)" to IFormatReader. - Enhanced …

02/15/07:

20:06 Changeset [2287] by chris
Notebook: support for multiple pixels in weird order should be in place I …
19:37 Changeset [2286] by chris
Notebook: added capacity to find lowest ID number in pixels. no longer …
19:30 Changeset [2285] by chris
Notebook: Adding support for multiple pixel thumbnails, commiting what I …
15:41 Changeset [2284] by sorber
New classes for drawing polylines. Typos and small changes.
14:31 Changeset [2283] by curtis
Fix critical OME-TIFF conversion bug (insert required TiffData element).
14:11 Changeset [2282] by sorber
Fixed bug which allowed multiple freeforms to become selected as each was …
14:10 Changeset [2281] by curtis
Nicer error message when ij.jar is not found.
14:07 Changeset [2280] by curtis
Better error messages in testRead if OME-XML generation fails (in …
14:05 Changeset [2279] by curtis
Nicer error message if QTJava is not found.
14:02 Changeset [2278] by curtis
Update JAR classpaths.
13:42 Changeset [2277] by curtis
Better exceptions when libraries are missing.
13:42 Changeset [2276] by melissa
Instantiate OMEReader directly if we are downloading from OME (since …
13:30 Changeset [2275] by curtis
Remove OMEReader from the readers list -- easier than wrapping all …
13:25 Changeset [2274] by curtis
Throw a nicer exception if OME-Java is not present.
13:25 Changeset [2273] by curtis
Be more aggressive about trapping ND2 exceptions when the jai_imageio.jar …
12:56 Changeset [2272] by curtis
Fix compile error.
08:20 Changeset [2271] by melissa
Fixed compile error.

02/14/07:

17:08 Changeset [2270] by chris
Notebook: 1) delete old tif file if it exists before using TiffWriter to …
16:56 Changeset [2269] by chris
Notebook: more efficient saving of tiff files through TiffWriter instead …
16:42 Changeset [2268] by curtis
Use getChildNodes instead of old getChildren signature.
16:42 Changeset [2267] by curtis
Switch to new setPixels signature.
16:40 Changeset [2266] by curtis
Change method signatures from OMEXMLNode.getChildren to …
16:32 Changeset [2265] by curtis
Change setPixels to have separate Image and Pixels indices.
15:38 Changeset [2264] by curtis
Better internal ID generation (based on element names instead of global).
14:28 Changeset [2263] by curtis
Assume links starting with http: are web links rather than internal.
14:20 Changeset [2262] by curtis
Fix Windows browser launching.

02/13/07:

16:58 Changeset [2261] by curtis
Rearrange GUI to accommodate interactive color table; add ability to …
16:25 Changeset [2260] by nor
fixed improper sizeC value
15:24 Changeset [2259] by sorber
Cleaned up logic of mouseDown method
14:56 Changeset [2258] by melissa
Fixed bug - close() didn't reset image counter.
09:31 Changeset [2257] by melissa
Fixed channel min/max computation and retrieval for RGB TIFFs.

02/12/07:

12:54 Changeset [2256] by callan
* Absolves the responsibility of handling min/max calculation from the …
Note: See TracTimeline for information about the timeline view.