Timeline


and

03/26/07:

17:31 Changeset [2519] by curtis
Channel min/max computation logic: * Clean up variable initialization in …
13:48 Changeset [2518] by curtis
Ignore *.class in loci.ome.notebook.editor package.
13:32 Ticket #87 (Exporter plugin doesn't preserve pixel type) closed by melissa
fixed: Fixed in r2517.
13:32 Changeset [2517] by melissa
Fixed exporter to preserve pixel type.
12:47 Ticket #87 (Exporter plugin doesn't preserve pixel type) created by melissa
The Bio-Formats Exporter for ImageJ always writes 8-bit images, even if …
12:35 Changeset [2516] by melissa
Added option to open the OME Notebook with metadata for the current file.
12:31 Changeset [2515] by melissa
Updated notebook scripts to reflect new class structure.
12:24 Changeset [2514] by melissa
Re-added OMEIS typedefs.
12:09 Changeset [2513] by melissa
New version of the OME notebook. Moved old version to old-notebook.
09:25 Changeset [2512] by melissa
Verify that CreationDate field is formatted correctly.
08:25 Ticket #76 (011B1_Morph_A01_s1_w1.TIF fails to import into OME using Bio-Formats) closed by melissa
fixed: As of r2511, the TIFF reader will always properly populate the …
08:23 Changeset [2511] by melissa
Always populate the CreationDate field, even if there isn't a valid date …

03/23/07:

14:30 Changeset [2510] by curtis
Eliminate needless warnings in setChannelGlobalMinMax.
13:48 Ticket #86 (Implement spectral projection feature) created by curtis
Long Yan devised a "spectral projection" technique that produces …
13:32 Ticket #85 (Look into other curve fitting algorithms) created by curtis
There are other potentially useful techniques for exponential curve …
13:29 Ticket #84 (Use system response file to calibrate data via deconvolution) created by curtis
We collect a system response file that represents the instrument's …
11:46 Changeset [2509] by curtis
Comment out support for 2-exponential fits, since it is still broken.
11:38 Ticket #22 (Data colorization is inconsistent) closed by curtis
fixed: Fixed in r2508.
11:37 Ticket #26 (Finish interactive color scale features) closed by curtis
fixed: Finished in r2508. Color scale only goes from red to blue (no violet), but …
11:32 Changeset [2508] by curtis
Add LUT buttons for color widget, add color range override, fix color …
10:21 Changeset [2507] by curtis
Simpler for Slim Plotter to depend on entire loci.formats.util package …
10:20 Changeset [2506] by curtis
Clean up dependencies for loci.visbio.util package.
10:02 Changeset [2505] by curtis
2007 Mar 23 build of VisAD.
09:43 Ticket #83 (ArrayIndexOutOfBoundsException in TIFF metadata parsing) closed by melissa
fixed: This is actually a bug in how WiscScan writes OME-TIFF files - it produces …
09:37 Changeset [2504] by melissa
Added hack to deal with incorrect OME-TIFF files produced by WiscScan.
08:29 Changeset [2503] by melissa
- Fixed NPE while checking for MetaMorph comment. - Fixed bug with TIFF …

03/22/07:

18:29 Ticket #25 (Log scale improvements) closed by curtis
fixed: All known relevant bugs with the log scale fixed in r2502.
18:28 Changeset [2502] by curtis
Fix bug in log scale causing fit results to be affected.
17:51 Changeset [2501] by curtis
Some improvements to the log scale.
14:57 Ticket #83 (ArrayIndexOutOfBoundsException in TIFF metadata parsing) created by curtis
[…]
13:29 Changeset [2500] by sorber
File chooser for export button.
13:05 Ticket #82 (Better support for writing OME-TIFF, including proposed modifications) created by curtis
Bio-Formats can write OME-TIFF by inserting the proper OME-XML string into …
12:56 Ticket #81 (More OME-TIFF code examples) created by curtis
We have several examples that use Bio-Formats to work with OME-TIFF files, …
12:48 Ticket #80 (Update OME-TIFF web site to reflect proposed modifications) created by curtis
I sent …
12:43 Changeset [2499] by curtis
Use Bio-Formats Status events instead of Task events.
12:33 Ticket #79 (Image window does not size down properly after being sized up) closed by curtis
fixed: Fixed in r2498. The problem was due to improper CacheIndicator
12:33 Changeset [2498] by curtis
Fix image window downsizing bug.
12:26 Changeset [2497] by curtis
Command line tool for launching OME Metadata Notebook.
12:25 Changeset [2496] by curtis
Make WiscScan view *not* the default.
12:20 Ticket #79 (Image window does not size down properly after being sized up) created by curtis
The GUI scales upwards properly when the image window is resized to be …
12:06 Ticket #77 (Some TIFF comment key/value pairs are parsed incorrectly) closed by melissa
fixed: Added logic to parse MetaMorph TIFF comments in r2495. Changed from …
12:02 Changeset [2495] by melissa
Parse MetaMorph TIFF comments.
10:25 Ticket #78 (Implement OMERO upload and download logic) created by curtis
Currently, OME I/O contains logic to communicate with an OME database. For …
10:12 Ticket #77 (Some TIFF comment key/value pairs are parsed incorrectly) created by curtis
Most of the key/value pairs found in the ImageDescription for (e.g.) …
10:01 Ticket #76 (011B1_Morph_A01_s1_w1.TIF fails to import into OME using Bio-Formats) created by curtis
Here is the stack trace: […] Examining the OME-XML that Bio-Formats …
09:41 Changeset [2494] by curtis
Eliminate deprecation warning from Java 6 compiler.
09:25 Ticket #40 (AVI writer produces incorrect video files) closed by curtis
fixed: Woo, it plays in Media Player, too.
08:56 Changeset [2493] by melissa
Fixed various LSM bugs.

03/21/07:

14:31 Changeset [2492] by melissa
Fixed bug causing corrupt files to be written.
11:34 Changeset [2491] by melissa
Fixed bug that caused skewing in Totem.
10:08 Ticket #40 (AVI writer produces incorrect video files) reopened by curtis
I tested with ImageJ's [ http://rsb.info.nih.gov/ij/plugins/avi.html AVI …
09:54 Changeset [2490] by curtis
Crappy binary diff utility.
08:57 Changeset [2489] by curtis
Use percentage of maximum for a parameters.
08:53 Ticket #75 (Improve robustness of OME Web Start launcher) created by curtis
To launch VisBio from the OME web interface via Java Web Start, OME …
08:40 Ticket #74 (Leverage the template engine across several distinct use cases) created by curtis
Because of the template engine described in ticket #72, Notes will be …
08:35 Ticket #73 (Graphical template editor) created by curtis
We need a graphical template editor to go along with the OME Notes …
08:28 Ticket #72 (More powerful template engine) created by curtis
While the OME Metadata Editor is a full-featured graphical OME-XML editor, …
08:02 Ticket #71 (Use OME Notes for metadata viewing and editing) created by curtis
VisBio currently has its own, out-of-date metadata viewer. As we develop …

03/20/07:

17:40 Ticket #70 (Additional OME-TIFF sample data) created by curtis
The [ http://www.loci.wisc.edu/ome/ome-tiff-data.html OME-TIFF sample data …
17:27 Ticket #69 (Adapt Data Converter into a Bio-Formats export GUI component) created by curtis
The Data Converter application is a good start on a general-purpose export …
14:49 Ticket #68 (Test all format readers with omebf) created by curtis
The omebf tool allows Bio-Formats to be used with an OME installation to …
14:17 Ticket #67 (Finish OME-TIFF and Bio-Formats section of FAQ web page) created by curtis
The [ http://www.loci.wisc.edu/ome/faq.html#formats OME-TIFF and …
14:14 Ticket #66 (Set default overlays filename) created by sorber
When overlays are exported or saved to text, no default filename is …
13:58 Ticket #65 (Cache indicators can report erroneous caching situation) created by curtis
If the dimensional scroll bars are clicked through too quickly on some …
13:50 Ticket #64 (Automatically create 2D display with overlays) created by sorber
Automatically create a 2D display with overlays after adding dataset. For …
13:48 Ticket #63 (Gray out File>Save and QuickSave when appropriate) created by curtis
For third party formats, the OME Metadata Editor should not be allowed to …
13:42 Changeset [2488] by sorber
Overlays help update: polyline tool.
13:33 Changeset [2487] by sorber
Commenting.
13:31 Ticket #62 (Record proprietary metadata under Image>CustomAttributes in OME-XML) created by curtis
Many third-party formats contain "proprietary" metadata -- information of …
13:27 Ticket #15 (Base TransientSelectBox resizing on pixel and not domain coordinates) closed by sorber
fixed
13:15 Ticket #61 (Integrate Slim Plotter features into VisBio) created by curtis
One of the major original goals of VisBio was to work with data of any …
13:06 Ticket #60 (Quality of exponential curve fit is questionable) created by curtis
The single exponential curve fits look good, but the raw chi-squared error …
12:58 Changeset [2486] by curtis
Limit number of exponential components to 1 or 2, for now.
12:57 Changeset [2485] by curtis
Reenable multi-exponential fitting. Switch multi-exponential fit to have …
11:21 Ticket #59 (Create OME Notes web page) created by curtis
There is a  stub in place for the …
11:19 Ticket #58 (Update OME plugin for ImageJ web site) created by curtis
The OME plugin for ImageJ has undergone many changes, and is no longer in …
09:50 Ticket #57 (Execute ImageJ macros on virtual stacks) created by curtis
Currently, when working with an ImageJ virtual stack, performing any …
08:26 Ticket #43 (Some QuickTime movies erroneously report missing resource fork) closed by melissa
fixed: Fixed in r2484. keck3.mov now throws the following exception: […]
08:25 Ticket #56 (Support for compressed QuickTime headers) created by melissa
Some QuickTime files (e.g. …
08:17 Changeset [2484] by melissa
Explicitly throw an exception if the QuickTime file has a compressed …

03/19/07:

15:25 Ticket #40 (AVI writer produces incorrect video files) closed by melissa
fixed: This was a bug in the AVI reader (not the writer); see r2483. Totem (xine …
15:23 Ticket #55 (Support for Volocity format) created by curtis
There are several file types involved in the Volocity database structure, …
14:57 Ticket #54 (Screencasts for LOCI software tools) created by curtis
It would be really great to create screencasts (see the …
14:49 Changeset [2483] by melissa
Fixed AVI reader bug; simplified some logic in the AVI writer.
13:37 Ticket #53 (OME download feature should use ImageFlatField) created by curtis
VisBio's ability to download from OME uses the Bio-Formats OMEReader
13:33 Ticket #52 (Revamp GUI for next major release) created by curtis
The VisBio GUI is powerful, but quite cumbersome for common tasks. It …
13:29 Ticket #51 (Support for multi-series data) created by curtis
Bio-Formats introduces the concept of a multi-series dataset to deal with …
13:27 Ticket #50 (TIFF export should write in OME-TIFF format) created by curtis
VisBio currently exports TIFF without OME-XML in the header. It should be …
13:25 Ticket #49 (More flexible cache manager) created by curtis
The VisBio cache manager currently keeps exactly one image plane in memory …
13:13 Ticket #48 (Eliminate "range component" concept from VisBio) created by curtis
With the next major revision of VisBio, the idea of "range components" …
13:09 Ticket #47 (Microns per pixel support is broken) created by curtis
With the latest version, checking the "Use microns instead of pixels" …
13:05 Ticket #46 (Thumbnailing support should use Bio-Formats) created by curtis
Going along with the idea that VisBio should lean on Bio-Formats more …
12:46 Ticket #45 (Support for QuickTime rpza codec) created by curtis
We have at least one QuickTime movie that uses the rpza codec in …
12:41 Ticket #44 (Support for AVI msrle codec) created by curtis
Adding support to AVIReader for many different AVI codecs is outside the …
12:36 Ticket #43 (Some QuickTime movies erroneously report missing resource fork) created by curtis
Some movies with unsupported codecs (at least svq3, and maybe others) …
12:33 Ticket #42 (Support for QuickTime Sorenson 3 codec) created by curtis
Some of the [ http://www.loci.wisc.edu/visbio/movies.html videos on from …
12:22 Ticket #41 (QuickTime reader colors for mjpb-encoded data differ from QTJava results) created by curtis
The native QuickTime reader handles the mjpb codec (Motion JPEG-B) but the …
12:12 Ticket #40 (AVI writer produces incorrect video files) created by curtis
The AVI writer sometimes produces videos that are skewed or scrambled. The …
12:02 Ticket #39 (Dimension labels cannot be overridden) created by curtis
VisBio used to allow the user to manually specify the label for each …
11:57 Ticket #38 (Arbitrary slicing does not work for large data) created by curtis
The arbitrary slicing logic in VisBio was recently rewritten to be more …
11:46 Changeset [2482] by curtis
Fix possible configuration skew problems between constituent readers, and …
11:36 Ticket #37 (Resampling should not call unpackFloats) created by curtis
The point of using ImageFlatField within VisBio is for efficiency. There …
11:23 Ticket #36 (4-channel data does not import correctly) created by curtis
Files with 4 channels (and potentially more) throw an exception during …
11:18 Ticket #35 (More intelligent usage of Bio-Formats) created by curtis
VisBio was migrated from its own importer code from the pre-Bio-Formats …
11:01 Ticket #34 (Better ImageFlatField support within VisAD) created by curtis
VisBio is using VisAD's ImageFlatField class, which was added to support …
10:45 Ticket #33 (16-bit images do not display properly) created by curtis
Since switching VisBio over to the ImageFlatField logic, 16-bit images do …
10:43 Ticket #29 (Zeiss LSM/MDB bug: "No such method: mdb_open") closed by melissa
fixed: Fixed in r2481.
10:42 Ticket #32 (Java2D support is broken) created by curtis
VisBio is supposed to support Java2D displays, but currently makes several …
10:42 Changeset [2481] by melissa
Use absolute path to MDB file.
10:31 Changeset [2480] by melissa
Open the MDB file using a mdbtools.jdbc2.File object, *not* a java.io.File …
10:20 Ticket #31 (Save/restore state feature is broken) created by curtis
In theory, VisBio allows the state to be saved to an XML file which can …
10:19 Ticket #30 (State logic needs support for invertible operations) created by curtis
The undo/redo logic currently functions by saving a snapshot of the …
10:02 Ticket #29 (Zeiss LSM/MDB bug: "No such method: mdb_open") created by curtis
VisBio throws an exception when attempting to open …
09:53 Changeset [2479] by curtis
Add unit to tau range label.
09:40 Ticket #28 (Ability to bin channels together and export to SDT) created by curtis
It would be useful for Slim Plotter to be able to bin together several …
09:39 Ticket #27 (Write to SDT format) created by curtis
Certain features of Slim Plotter require the ability to export to SDT …
09:28 Ticket #26 (Finish interactive color scale features) created by curtis
The interactive color scale is a good start toward more fine-grained color …
09:21 Ticket #25 (Log scale improvements) created by curtis
The log scale has some inadequacies. It would be nice if it had proper z …
09:18 Ticket #14 (Format handler subclasses should send status update events) closed by melissa
fixed: Status events added in r2478.
09:16 Ticket #24 (Multiple exponential curve fitting) created by curtis
Preliminary support for multi-exponential curve fitting was added to Slim …
09:15 Changeset [2478] by melissa
Added status events to readers.
09:15 Ticket #23 (Minimum and maximum color value sliders do not work as expected) created by curtis
The min/max color sliders for adjusting the intensity pane's black level …
09:11 Ticket #22 (Data colorization is inconsistent) created by curtis
When toggling between "counts" and "lifetimes" colorization modes, the …
09:06 Ticket #21 (Residuals colorization is inconsistent) created by curtis
When recomputing color ranges is required, such as when toggling linear …

03/16/07:

18:54 Changeset [2477] by sorber
TransientSelectBox now based on pixel coordinates, no longer rotates with …
16:32 Ticket #20 (Use QTObject.dispose() in QTJava-related code to avoid potential crashes ...) created by curtis
A [ http://lists.apple.com/archives/quicktime-java/2006/Jul/msg00039.html
16:22 Ticket #19 (File pattern detection sometimes depends on the file chosen as the basis) created by curtis
Some file groups are not always properly detected due to variations in …
14:33 Changeset [2476] by curtis
2007 Mar 16 release of LOCI Tools
14:33 Changeset [2475] by curtis
2007 Mar 16 release of LOCI Tools
14:33 Changeset [2474] by curtis
2007 Mar 16 release of LOCI Tools
14:33 Changeset [2473] by curtis
2007 Mar 16 release of LOCI Tools
14:33 Changeset [2472] by curtis
2007 Mar 16 release of LOCI Tools
14:33 Changeset [2471] by curtis
2007 Mar 16 release of LOCI Tools
14:33 Changeset [2470] by curtis
2007 Mar 16 release of LOCI Tools
14:33 Changeset [2469] by curtis
2007 Mar 16 release of LOCI Tools
14:32 Changeset [2468] by curtis
Remove Leica Converter targets from build script.
14:23 Changeset [2467] by curtis
Update what's new list with most recent changes.
14:21 Changeset [2466] by curtis
Populate calibration and file info in Image5D.
14:15 Changeset [2465] by melissa
If needed, swap endianness in ZeissLSMReader.openBytes.
13:48 Changeset [2464] by curtis
buildFileChooser moved from FormatHandler to FormatTools.
13:43 Ticket #18 (Support for additional dimensions (wrapped into channel)) created by curtis
Bio-Formats strongly supports OME's 5D model (XYZCT), but LOCI collects …
13:28 Ticket #17 (Bio-Formats importer does not set calibration information for alternate ...) created by curtis
When importing data with the Bio-Formats Importer plugin, if "Standard …
13:26 Changeset [2463] by curtis
Insert Thread.sleep call in MacroManager thread to avoid 100% CPU usage. …
13:05 Ticket #16 (OME Uploader API should be merged with format writer logic) created by curtis
Bio-Formats includes tools for downloading from an OME database …
13:04 Ticket #15 (Base TransientSelectBox resizing on pixel and not domain coordinates) created by sorber
When you stretch the TransientSelectBox, the coordinates of the box …
13:02 Ticket #14 (Format handler subclasses should send status update events) created by curtis
It is now possible for classes that extend FormatHandler to fire status …
12:58 Ticket #13 (Behavior of overlay tools when no data object present) created by sorber
Using overlay tools on a display with no data object causes the overlays …
11:54 Ticket #12 (Override createSubtitle() properly) created by curtis
As [ https://list.nih.gov/cgi-bin/wa?A2=ind0703&L=imagej&H=1&P=11874
11:34 Ticket #11 (Improve behavior on multi-head configurations) created by curtis
I briefly tested VisBio on an nVidia system with TwinView on Linux, and it …

03/15/07:

15:27 Ticket #10 (Export overlay statistics to .xls) created by sorber
Statistics include position, dimensions, etc. of overlays. The overlays …
15:09 Ticket #9 (Improve selection of overlays) created by sorber
Come up with a way less obtrusive than the current yellow grid to indicate …
15:01 Ticket #8 (Improve Checkstyle configuration to enforce additional coding standards) created by curtis
There are several checks that would be nice to add to the checkstyle.xml …
14:53 Ticket #7 (Investigate source code auto-formatting tools) created by curtis
Style checkers are nice, but it would be useful to be able to run our …
14:45 Ticket #6 (Improve VisBio.exe Windows launcher) created by curtis
VisBio (and Slim Plotter) uses the Marner Java Launcher for deployment on …
14:22 Changeset [2462] by curtis
Add status events to Alicona initFile.
14:22 Changeset [2461] by curtis
Tweaks.
14:22 Changeset [2460] by curtis
Add output of status events to testRead.
13:33 Changeset [2459] by curtis
Simply canMerge test.
13:29 Ticket #5 (Better channel merging in Bio-Formats Importer) created by curtis
As mentioned in ticket #2, the method to use for merging more than three …
10:50 Ticket #4 (Bio-Formats native solution) created by curtis
Many developers, especially those working on applications for acquisition …
10:42 Ticket #2 (Bio-Formats Importer plugin loses some channels when merging) closed by melissa
fixed: Fixed in r2458. The solution was to only allow merging if there are 2 or …
10:41 Changeset [2458] by melissa
Only allow merging if there are 2 or 3 channels; otherwise display a …
10:15 Ticket #3 (Support for Volocity databases) created by curtis
Several people, including Michael Schell, Jeremy Sanderson, Kurt De Vos …
10:06 Ticket #2 (Bio-Formats Importer plugin loses some channels when merging) created by curtis
When using "Merge to RGB" with the Bio-Formats Importer plugin, datasets …
09:36 Changeset [2457] by curtis
Add status reporting to OME uploader. But uploader is broken right now.
08:06 Changeset [2456] by melissa
Calculate plane size based on the RGB channel count, not sizeC.

03/14/07:

17:06 Changeset [2455] by curtis
Clean up comments, style and whitespace.
16:22 Changeset [2454] by curtis
Add status update hooks to loci.formats.ome.Uploader logic.
16:11 Changeset [2453] by curtis
Add event for listening to status updates from format readers and writers. …
14:58 Changeset [2452] by curtis
Remove note about obsolete bad-files.txt.
14:55 Changeset [2451] by curtis
Package description for loci.formats.codec package.
14:54 Changeset [2450] by curtis
Move compression/decompression logic into new loci.formats.codec package.
13:46 Changeset [2449] by curtis
Ignore *.class.
13:45 Changeset [2448] by curtis
Move MultiLUT into loci.apps package.
13:44 Changeset [2447] by curtis
No need to keep maintaining this package.
11:38 Changeset [2446] by curtis
Only upload data once per dataset.
11:33 Changeset [2445] by curtis
Whitespace.
11:31 Changeset [2444] by curtis
Tweak comments.
11:25 Changeset [2443] by curtis
Tweak javadoc.
11:24 Changeset [2442] by curtis
Move rasterToPosition, positionToRaster
11:23 Changeset [2441] by curtis
OMEUploader should work, though events still aren't worked out.
11:17 Changeset [2440] by curtis
Remove old batch file.
11:15 Changeset [2439] by curtis
Remove old batch files.
11:14 Changeset [2438] by curtis
Move Bits.swap utility methods into DataTools.
07:51 Ticket #1 (Leica Reader openBytes() Exception) closed by melissa
fixed
07:40 Changeset [2437] by melissa
Implemented openBytes(String, int, byte[]) in LeicaReader.
05:42 Ticket #1 (Leica Reader openBytes() Exception) created by callan
The Leica reader currently throws and exception when the …

03/13/07:

18:26 Changeset [2436] by curtis
Tweak.
18:25 Changeset [2435] by curtis
Add Windows batch file versions of command line tools.
18:03 Changeset [2434] by curtis
Remove omeul from VisBio distribution.
18:01 Changeset [2433] by curtis
Remove old scripts.
17:56 Changeset [2432] by curtis
Add LOCI command line tools.
17:47 Changeset [2431] by sorber
Polyline last node highlights on mouse-over.
17:03 Changeset [2430] by curtis
Move static FormatReader methods to new FormatTools class. The rationale …
16:32 Changeset [2429] by sorber
Replaced instances of deprecated HSSF.setCellValue(String) method.
16:19 Changeset [2428] by sorber
Basic export overlays to .xls format.
10:39 Changeset [2427] by melissa
Improved macro propagation logic.

03/12/07:

16:02 Changeset [2426] by curtis
More explicit comment about pixelSizeX/Y issue.
14:06 Changeset [2425] by melissa
First attempt at executing macros on a virtual stack.
09:49 Changeset [2424] by melissa
Various bugfixes - can now choose not to cache images.
08:24 Changeset [2423] by melissa
Tweaked javadoc.

03/09/07:

15:13 Changeset [2422] by melissa
Changed OMEXMLMetadataStore.setDimensions to populate PixelSizeX if it is …

03/08/07:

15:12 Changeset [2421] by melissa
Fixed compiler error.
15:02 Changeset [2420] by melissa
More metadata enhancements.
11:15 Changeset [2419] by curtis
Whitespace.
11:15 Changeset [2418] by curtis
Whitespace.
11:04 Changeset [2417] by curtis
Add a couple of recent things to the what's new list.
10:50 Changeset [2416] by curtis
Use "reader" instead of "readers[0]", since readers might be null.
10:42 Changeset [2415] by melissa
Populate more MetadataStore fields.
10:40 Changeset [2414] by melissa
Print a warning if a method that doesn't take the 'id' parameter is called …
10:20 Changeset [2413] by curtis
Reenable metadata filtering, remove some superfluous lines.
09:40 Changeset [2412] by melissa
Removed superfluous calls to close() and setColorTableIgnored.

03/07/07:

16:41 Changeset [2411] by curtis
Update to ImageJ v1.38l.
16:14 Changeset [2410] by melissa
Added hack to populate missing pixel sizes.
15:48 Changeset [2409] by curtis
2007 Mar 07 release of LOCI Tools
15:48 Changeset [2408] by curtis
2007 Mar 07 release of LOCI Tools
15:48 Changeset [2407] by curtis
2007 Mar 07 release of LOCI Tools
15:48 Changeset [2406] by curtis
2007 Mar 07 release of LOCI Tools
15:48 Changeset [2405] by curtis
2007 Mar 07 release of LOCI Tools
15:48 Changeset [2404] by curtis
2007 Mar 07 release of LOCI Tools
15:48 Changeset [2403] by curtis
2007 Mar 07 release of LOCI Tools
15:48 Changeset [2402] by curtis
2007 Mar 07 release of LOCI Tools
15:43 Changeset [2401] by curtis
Only put image name in label if Image Name attribute is non-null.
15:01 Changeset [2400] by curtis
No need to use separate ImageReader.
15:00 Changeset [2399] by curtis
Fix bug in channel separator caching with multiple series.
14:59 Changeset [2398] by curtis
Remove unnecessary variable.
12:33 Changeset [2397] by melissa
Use a separate ImageReader to load the thumbnails.
11:25 Changeset [2396] by curtis
Restored commented out conditional.
11:05 Changeset [2395] by curtis
Add background series preview thumbnail loader to what's new list.
11:02 Changeset [2394] by curtis
Thumbnail background loader works…

03/06/07:

17:52 Changeset [2393] by sorber
Can erase polyline nodes. Add indicator for closed polyline. Polyline …
17:48 Changeset [2392] by curtis
Initial implementation of background thumbnail loader.
13:34 Changeset [2391] by melissa
Updated list of new stuff for today's release.
12:20 Changeset [2390] by melissa
Fixed problem with ND2 BufferedImage deconstruction.
11:55 Changeset [2389] by melissa
Fixed issue with sizeC > 4.
09:18 Changeset [2388] by melissa
Always use AWT for BufferedImage scaling.
08:42 Changeset [2387] by melissa
Added new test to check that the used file list is sane.
08:39 Changeset [2386] by melissa
Minor bugfixes.
08:39 Changeset [2385] by melissa
Copied blank image logic to openThumbImage and openThumbBytes.

03/05/07:

12:59 Changeset [2384] by melissa
Added support for Micro-Manager file format.
12:57 Changeset [2383] by melissa
Updated to use getRGBChannelCount.
10:15 Changeset [2382] by melissa
Miscellaneous bugfixes.
10:15 Changeset [2381] by melissa
Added thumbnail dimension tests.
08:08 Changeset [2380] by melissa
Fixed bug reported by Claude Bonnard.

03/02/07:

13:32 Changeset [2379] by melissa
Convert inches to um, instead of cm.
13:28 Changeset [2378] by curtis
Add missing(?) break statement.
13:27 Changeset [2377] by melissa
- Changed BaseTiffReader.initStandardMetadata to throw IOException. - …
11:09 Changeset [2376] by melissa
More thorough metadata parsing.
08:53 Changeset [2375] by melissa
Merged Andor and Fluoview readers (since they are the same format). Also …

03/01/07:

18:12 Changeset [2374] by sorber
Select and drag individual polyline nodes.
15:59 Changeset [2373] by curtis
Better slice labels (display ZCT coords), fix some bugs.
15:02 Changeset [2372] by sorber
Provisional fix of indexing 0/1 bug for loading, saving overlays.
14:09 Changeset [2371] by melissa
Uncommented debugging statements.
14:09 Changeset [2370] by melissa
Fixed NPE when trying to open PerkinElmer image files.
14:06 Changeset [2369] by curtis
Add RGB channel count and RGB sanity test to testRead core metadata …
12:35 Changeset [2368] by melissa
Fixed compile errors.
12:30 Changeset [2367] by melissa
Changed OME-XML reflection logic to reflect new package structure.
12:23 Changeset [2366] by melissa
Fixed endianness detection and issue with 32-channel dataset.
12:09 Changeset [2365] by curtis
Load metadata from just the first file, rather than all constituent files.
12:08 Changeset [2364] by curtis
HLT_ALPHA should be final.
11:26 Changeset [2363] by curtis
Simplify math for getEffectiveSizeC and getRGBChannelCount.

02/28/07:

12:45 Changeset [2362] by curtis
2007 Feb 28 release of LOCI Tools
12:45 Changeset [2361] by curtis
2007 Feb 28 release of LOCI Tools
12:45 Changeset [2360] by curtis
2007 Feb 28 release of LOCI Tools
12:45 Changeset [2359] by curtis
2007 Feb 28 release of LOCI Tools
12:45 Changeset [2358] by curtis
2007 Feb 28 release of LOCI Tools
12:45 Changeset [2357] by curtis
2007 Feb 28 release of LOCI Tools
12:43 Changeset [2356] by curtis
2007 Feb 28 release of LOCI Tools
12:42 Changeset [2355] by curtis
2007 Feb 28 release of LOCI Tools
12:36 Changeset [2354] by curtis
2007 Feb 28 release of LOCI Tools
12:07 Changeset [2353] by curtis
What's new for 2007 Feb 28 release.
11:53 Changeset [2352] by curtis
Fix bug with restoration of "ignore color tables" option from ImageJ …
07:50 Changeset [2351] by melissa
Fixed various problems with the importer that caused the "ignore color …

02/27/07:

13:59 Changeset [2350] by curtis
Eliminate black bars in thumbnails.

02/26/07:

14:34 Changeset [2349] by curtis
Update omebf script and move into ome subpackage.
14:22 Changeset [2348] by curtis
Show middle thumbnail instead of first thumbnail; display ImageJ status …
13:40 Changeset [2347] by curtis
2007 Feb 26 release tag.
13:40 Changeset [2346] by curtis
2007 Feb 26 release tag.
13:39 Changeset [2345] by curtis
2007 Feb 26 release tag.
13:39 Changeset [2344] by curtis
2007 Feb 26 release tag.
13:39 Changeset [2343] by curtis
2007 Feb 26 release tag.
13:38 Changeset [2342] by curtis
2007 Feb 26 release tag.
13:38 Changeset [2341] by curtis
2007 Feb 26 release tag.
13:38 Changeset [2340] by curtis
2007 Feb 26 release tag.
13:31 Changeset [2339] by curtis
Add Brian to copyright dialog.
13:31 Changeset [2338] by curtis
Add release date.
12:13 Changeset [2337] by curtis
Formatting tweaks.
11:53 Changeset [2336] by melissa
One last fix - strings need to be trimmed before adding to metadata …
11:24 Changeset [2335] by melissa
Use absolute path names in initFile.
Note: See TracTimeline for information about the timeline view.