Timeline


and

06/28/07:

15:14 Changeset [2920] by curtis
Add counts information to FWHM print-out.
13:23 Changeset [2919] by melissa
Don't fail the writeConfig test if the file is invalid.
11:26 WikiStart edited by curtis
(diff)
11:10 Changeset [2918] by melissa
Added method to read a string.
10:49 Changeset [2917] by melissa
Moved MS-RLE codec out of AVIReader.

06/27/07:

15:41 Ticket #151 (Multi-series Slidebook support) closed by melissa
fixed: Fixed in r2916.
15:41 Changeset [2916] by melissa
Added multi-series support.
15:00 TracStart created by curtis
11:42 Ticket #151 (Multi-series Slidebook support) created by melissa
After talking to Steve, it sounds like Slidebook files can have multiple …
10:07 Ticket #108 (Investigate composite image stacks in ImageJ) closed by melissa
fixed: r2915 contains support for composite image stacks. This was achieved by …
10:03 Changeset [2915] by melissa
Added support for composite image stacks.

06/26/07:

21:49 Changeset [2914] by melissa
Cleaned up QuickTime reader - all codec implementations have been moved to …
20:10 Ticket #150 (Assorted peculiar VisBio exceptions) created by sorber
Curtis: here are three errors I found in a log file while cleaning up my …[…]
19:57 Changeset [2913] by sorber
Style checks.
19:52 Changeset [2912] by sorber
Style checks.
18:41 Changeset [2911] by sorber
Reordered API methods for consistency.
18:39 Ticket #90 (Format and organize API methods in OverlayObject and subclasses) closed by sorber
fixed
18:39 Changeset [2910] by sorber
Reordered OverlayObject API methods for consistency.
18:14 Ticket #9 (Improve selection of overlays) closed by sorber
fixed
18:06 Ticket #132 (Write a tutorial for making measurements in VisBio) closed by sorber
fixed: Added tutorial to VisBio help. Made some modifications to text and …
17:55 Ticket #110 (Make invisible overlay objects automatically delete themselves) closed by sorber
worksforme: My fix for this problem is a piecemeal solution: sometimes the objects …
17:52 Ticket #141 (Decide where instance of SpreadsheetLauncher should live) closed by sorber
wontfix: Leave this as is for now. Leave future changes up to Curtis.
17:51 Ticket #139 (Clean up VisBio noded overlays code) closed by sorber
fixed
17:51 Ticket #147 (Polyline array out of bounds exception.) closed by sorber
fixed: Fixed a number of small bugs in polyline including this one.
17:50 Ticket #146 (Prevent ONOs from containing consecutive colocational nodes) closed by sorber
fixed: Prevented consecutive colocational nodes in set, insert, delete, and …
17:38 Changeset [2909] by sorber
Added comments to several files in overlays package. Added overlays/test …
17:35 Changeset [2908] by sorber
Added test folder; moved MathUtilTest inside. Added class Segment2D and …
16:24 Changeset [2907] by sorber
Removed accidentally committed testing code.
14:29 Changeset [2906] by sorber
Added measuring tutorial to built-in help.
10:58 Changeset [2905] by callan
* Optimizations to avoid millions of getSeries() invocations * Optimizing …

06/25/07:

20:45 Changeset [2904] by sorber
Reinstated green circles highlighting polyline nodes (OverlayUtil). Added …
13:12 Changeset [2903] by sorber
Incorporated checks into several OverlayNodedObject methods to prevent …

06/22/07:

15:22 Ticket #149 (Turn off statistics updating when drawing a FreeformExtension) created by sorber
The number of nodes and curve length statistics are misleading while a …
13:07 Changeset [2902] by melissa
Added list of sample data we would like, organized by format.

06/21/07:

13:47 Changeset [2901] by sorber
Added JUnit unit tests for MathUtil. Added another vector math method to …
13:45 Changeset [2900] by sorber
Fixed bug in selection layer generation for OverlayNodedObjects exposed by …
08:25 Ticket #148 (Do something about large quantities of metadata) created by melissa
We have several recently acquired datasets that have more metadata than …

06/20/07:

13:30 Ticket #147 (Polyline array out of bounds exception.) created by sorber
This has become visible now that bounds checking has been removed from …
11:02 Changeset [2899] by sorber
Corrected over-synchronization causing deadlock.
10:19 Changeset [2898] by melissa
Fixed floating point and RGB images.
08:24 Changeset [2897] by melissa
Fixed bug in byte->short conversion.

06/19/07:

16:49 Changeset [2896] by sorber
Synchronized access to node array in OverlayNodedObject.
16:33 Changeset [2895] by curtis
Override setId to clear last image cache.
10:04 Changeset [2894] by melissa
2007 Jun 19 release of LOCI Tools
10:04 Changeset [2893] by melissa
2007 Jun 19 release of LOCI Tools
10:04 Changeset [2892] by melissa
2007 Jun 19 release of LOCI Tools
10:04 Changeset [2891] by melissa
2007 Jun 19 release of LOCI Tools
10:04 Changeset [2890] by melissa
2007 Jun 19 release of LOCI Tools
10:04 Changeset [2889] by melissa
2007 Jun 19 release of LOCI Tools
10:04 Changeset [2888] by melissa
2007 Jun 19 release of LOCI Tools
10:04 Changeset [2887] by melissa
2007 Jun 19 release of LOCI Tools

06/18/07:

16:28 Ticket #142 (Update JGoodies Looks jar to include LookUtils (for determining OS type).) closed by sorber
fixed: LookUtils turns out to have a different package in the older version of …
16:27 Changeset [2886] by sorber
Misc. small changes.
15:03 Ticket #146 (Prevent ONOs from containing consecutive colocational nodes) created by sorber
Occasionally I've accidentally created polylines with two colocational …
14:57 Ticket #145 (Add rough check to improve speed of freeform erasing) created by sorber
Check distance to bounding boxes of freeforms before checking distances to …
14:55 Ticket #124 (Use more powerful erasing algorithm in FreeformTool) closed by sorber
fixed: Implemented this algorithm minus the bounding-box pre-check. Will file a …
14:50 Changeset [2885] by sorber
Added class FreeformExtension; moved some FreeformTool logic to this …
14:31 Ticket #143 (Enhance EPS support) closed by melissa
wontfix: I haven't been able to find a decent Java library for reading PostScript. …
13:40 Changeset [2884] by curtis
Normalize floating point thumbnails.
13:30 Changeset [2883] by curtis
Clean up code and add javadocs; eliminate reliance on dubious (probably …
12:51 Changeset [2882] by melissa
Ignore problematic color models in makeBuffered.
12:36 Changeset [2881] by curtis
Preview pane component for use with file chooser.
11:41 Changeset [2880] by melissa
ReaderTest now compiles with jikes.
09:29 Ticket #123 (Enable erasing of freeform just drawn) closed by sorber
fixed
08:54 Changeset [2879] by melissa
Don't assume sizeC == 1 in new ND2 files.
08:50 Changeset [2878] by melissa
Added support for new version of ND2.

06/15/07:

15:38 Changeset [2877] by curtis
Add TestNG JAR file to list of external libraries.
15:09 Changeset [2876] by melissa
Fixed a couple of small bugs; updated "what's new" for next release.
14:44 Changeset [2875] by sorber
First try at improving Freeform erasing. Misc. changes to …
14:41 Changeset [2874] by melissa
Updated info on automated testing.
14:03 Ticket #136 (Add pixel value check to testing framework) closed by melissa
fixed: Check added in r2872.
14:02 Changeset [2873] by melissa
Removed debugging statements.
14:02 Ticket #96 (Investigate TestNG data-driven testing) closed by melissa
fixed: Switched to TestNG in r2872.
14:01 Changeset [2872] by melissa
Updated testing framework to use TestNG (instead of JUnit); added pixel …
13:41 Changeset [2871] by melissa
Ignore class files; remove unused constants.

06/14/07:

15:04 Changeset [2870] by sorber
Fixed omission in floats-to-doubles convenience method.
11:59 Changeset [2869] by melissa
First draft of GUI component that controls cache parameters.
09:46 Changeset [2868] by sorber
Moved method "configureOverlay" from OverlayTool to OverlayTransform.
09:36 Changeset [2867] by melissa
Fixed how ImageTools.splitChannels(byte[], ...) handles multiple bytes per …

06/13/07:

14:54 Changeset [2866] by melissa
First draft of cache package.
12:33 Changeset [2865] by sorber
Improved highlighting of freeforms and polylines. Began refactoring …
12:32 Changeset [2864] by sorber
Applied style checks. Removed two print statements from last commit.
12:01 Changeset [2863] by sorber
Improved method for calculating bisector vector. Regrouped methods.
11:58 Changeset [2862] by melissa
Set the length of HTTP streams.
11:12 Ticket #144 (Fix >2GB ND2 files) closed by melissa
fixed: Fixed in r2861.
11:11 Changeset [2861] by melissa
Added support for >2GB files; improved metadata parsing and axis size …
08:21 Changeset [2860] by melissa
Added the file name and series name to each image's "info" property.

06/12/07:

14:01 Changeset [2859] by melissa
Better logic for removing thumbnails and ROIs from the image count.
12:49 Changeset [2858] by melissa
Populate Image names from the file names stored in the .lei (not the …
11:46 Changeset [2857] by curtis
Fix up Bio-Formats logging to use a simple, common logging infrastructure.
11:29 Changeset [2856] by curtis
Utility for summing together image planes.
10:00 Changeset [2855] by sorber
Added vector math functions.

06/11/07:

08:08 Changeset [2854] by melissa
Open images from the correct TIFF file.

06/07/07:

14:54 Ticket #144 (Fix >2GB ND2 files) created by melissa
Right now, ND2 files larger than 2GB can't be opened. Although …

06/06/07:

13:52 Changeset [2853] by melissa
Update 'whats-new' to reflect last two releases.
09:37 Changeset [2852] by melissa
2007 Jun 06 release of LOCI Tools
09:37 Changeset [2851] by melissa
2007 Jun 06 release of LOCI Tools
09:37 Changeset [2850] by melissa
2007 Jun 06 release of LOCI Tools
09:37 Changeset [2849] by melissa
2007 Jun 06 release of LOCI Tools
09:37 Changeset [2848] by melissa
2007 Jun 06 release of LOCI Tools
09:37 Changeset [2847] by melissa
2007 Jun 06 release of LOCI Tools
09:37 Changeset [2846] by melissa
2007 Jun 06 release of LOCI Tools
09:37 Changeset [2845] by melissa
2007 Jun 06 release of LOCI Tools

06/05/07:

14:29 Changeset [2844] by melissa
If there is a TIFF preview, read it instead of the PostScript image.
08:25 Changeset [2843] by melissa
Always use "<filename> - <series name>" window titles.

06/04/07:

15:05 Changeset [2842] by melissa
Fixed several smallish bugs.
15:03 Changeset [2841] by melissa
Don't manually register the metadata window with ImageJ's window manager.
12:37 Ticket #143 (Enhance EPS support) created by melissa
Rewrite EPS reader to use a 3rd party library (likely Apache's XMLGraphics …

05/31/07:

16:15 Changeset [2840] by sorber
Additions and changes to help html.
11:54 Changeset [2839] by melissa
Differentiate between default and real acquisition parameters.
11:15 Changeset [2838] by melissa
Fixed serious bugs with uploading to/downloading from OME servers whose …

05/30/07:

17:17 Changeset [2837] by sorber
Added method to format paths passed to Runtime.exec()
15:12 Changeset [2836] by sorber
Added missing class StringOption.
12:44 Ticket #125 (Automatically launch spreadsheet application when exporting overlays) closed by sorber
fixed
12:40 Ticket #142 (Update JGoodies Looks jar to include LookUtils (for determining OS type).) created by sorber
Currently, SpreadsheetLauncher's methods are practically copied …
12:31 Ticket #141 (Decide where instance of SpreadsheetLauncher should live) created by sorber
There only needs to be one SpreadsheetLauncher, instantiated once at …
12:25 Changeset [2835] by sorber
Added option to toggle automatic spreadsheet launch. Misc small changes to …
08:57 Changeset [2834] by melissa
Always try to use the real series name in the metadata window.
08:51 Changeset [2833] by melissa
Fixed logic for splitting up series-specific metadata.

05/29/07:

13:50 Changeset [2832] by melissa
Fixed bug in XML parser that caused most of the instrument settings to be …
11:04 Changeset [2831] by melissa
Added Khoros .xv reader.
08:40 Changeset [2830] by melissa
Speed up calls to setOriginalMetadata.
08:39 Changeset [2829] by melissa
Fixed Java 1.4-specific bug.
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