Timeline


and

07/25/07:

15:14 WikiStart edited by curtis
Add links to online source code and Javadocs. (diff)
13:17 Changeset [3011] by curtis
Apply workaround for the Apache Axis2 bug in more places.
11:31 Changeset [3010] by curtis
Workaround for bug in Apache Axis2.
10:41 Changeset [3009] by melissa
Moved date conversion logic to DataTools; significant improvements to ZVI …
07:42 Ticket #159 (Add support for compressed ZVI images) created by melissa
The most recent version of the ZVI spec allows for JPEG-compressed pixel …

07/24/07:

10:04 Ticket #158 (Add support for BigTiff) created by melissa
See  http://www.awaresystems.be/imaging/tiff/bigtiff.html

07/23/07:

14:19 Changeset [3008] by curtis
Update cache GUI component to respond to cache events. Now the GUI updates …
12:39 Changeset [3007] by melissa
Make sure RGB flag gets propagated.
08:42 Changeset [3006] by curtis
Tweaked OME2OME-CA.xslt to eliminate Java XSLT compiler warnings.

07/22/07:

14:44 Changeset [3005] by melissa
One last series name fix.

07/20/07:

15:32 Changeset [3004] by curtis
Some work on cache GUI component (not finished yet).
11:33 Changeset [3003] by curtis
Progress on caching logic: * CacheEvent for reporting caching events * …
11:31 Changeset [3002] by curtis
Fix NullPointerException with null objects.
11:22 Changeset [3001] by melissa
Better folder support, including proper handling of nested folders.
09:50 Changeset [3000] by melissa
Prepend folder name to series name.
08:44 Changeset [2999] by melissa
Overrode isMetadataComplete implementation for formats supported by OMERO.

07/19/07:

15:13 Changeset [2998] by melissa
Added "boolean isMetadataComplete()" to IFormatReader API.
12:25 Changeset [2997] by melissa
Fixed timestamps and added a fix for the change to the memory chunk …

07/18/07:

14:17 Changeset [2996] by melissa
Don't throw an exception if a parentless file is given to isThisType.

07/17/07:

14:59 Changeset [2995] by melissa
Don't assume dimension information is present.
12:25 Changeset [2994] by melissa
Added support for 16-bit and < 8-bit data.

07/16/07:

14:06 Changeset [2993] by melissa
2007 Jul 16 release of LOCI Tools
14:06 Changeset [2992] by melissa
2007 Jul 16 release of LOCI Tools
14:06 Changeset [2991] by melissa
2007 Jul 16 release of LOCI Tools
14:06 Changeset [2990] by melissa
2007 Jul 16 release of LOCI Tools
14:06 Changeset [2989] by melissa
2007 Jul 16 release of LOCI Tools
14:06 Changeset [2988] by melissa
2007 Jul 16 release of LOCI Tools
14:06 Changeset [2987] by melissa
2007 Jul 16 release of LOCI Tools
14:06 Changeset [2986] by melissa
2007 Jul 16 release of LOCI Tools
14:04 Changeset [2985] by melissa
Scroll the window so that the next matching line is at the top. No longer …
12:27 Changeset [2984] by curtis
Simply cache source interface a bit.
09:29 Changeset [2983] by curtis
Remove mention of caching improvements until package is more stable.
08:51 Changeset [2982] by melissa
Updated for next release.
08:44 Changeset [2981] by melissa
Fixed to ignore audio tracks and all but the first video track.

07/13/07:

18:01 Changeset [2980] by curtis
Some work on the cache component; add "gui" command to cache tester.
18:00 Changeset [2979] by curtis
Tweaks.
15:10 Changeset [2978] by melissa
Reset template before opening a file.
14:44 Changeset [2977] by curtis
Whitespace.
14:43 Changeset [2976] by curtis
Whitespace.
14:42 Changeset [2975] by curtis
Use LogTools instead of System.out.
14:39 Changeset [2974] by curtis
Use conservative default caching range.
14:37 Changeset [2973] by curtis
Woo, cache logic appears to be working.
12:00 Changeset [2972] by melissa
For now, don't stitch files.
11:53 Changeset [2971] by melissa
Fixed how non-standard pixel types are handled (no longer throws an …
10:01 Changeset [2970] by melissa
* Added missing setLogicalChannel calls. * Added new metadata categories …

07/12/07:

16:03 Changeset [2969] by curtis
A bit of cleanup.
14:56 Changeset [2968] by curtis
Rewrite cache strategy logic.
14:56 Changeset [2967] by curtis
Temporarily comment out some obsolete logic.
14:53 Changeset [2966] by curtis
Eliminate superfluous array allocation from raster/position methods.
14:45 Changeset [2965] by melissa
- Changed default background color, so that all font colors are visible. - …

07/11/07:

12:16 Changeset [2964] by melissa
* Removed unnecessary imports from TiffReader. * Cleaned up ZVI reader …

07/10/07:

17:15 Changeset [2963] by curtis
Fix compile errors.
17:03 Changeset [2962] by curtis
Tweak.
17:01 Changeset [2961] by curtis
A bunch of work on the caching logic. Still broken though.
15:01 Changeset [2960] by melissa
Converted HighInteger/LowInteger fields to real timestamp.
13:50 Changeset [2959] by melissa
Fixed a couple of NullPointerExceptions, and several bugs in the editor …
13:25 Changeset [2958] by melissa
Allow templates to specify the node number for each node in a map, e.g. if …
12:50 Changeset [2957] by melissa
Added setOriginalMetadataPopulated(boolean) and …
12:28 Ticket #154 (NullPointerException when populating template fields) closed by melissa
fixed: Fixed in r2956.
12:27 Changeset [2956] by melissa
Improved population logic.
09:36 Changeset [2955] by melissa
Added searchable text window.
09:35 Changeset [2954] by curtis
* Do not reload preview thumbnail if another used file is selected * …
09:34 Changeset [2953] by melissa
Updated to reflect new cache package structure.
09:31 Changeset [2952] by melissa
Added main method to Cache; fixed package names in sources.
09:16 Changeset [2951] by melissa
Allow sources to be constructed with either a filename or a reader; fixed …
09:10 Changeset [2950] by curtis
No need for package.html, as there are no Java source files in this …
09:05 Changeset [2949] by curtis
Move text documents into doc folder.
09:02 Changeset [2948] by curtis
With only a couple of strategies and sources, it is fine for everything to …
08:59 Changeset [2947] by curtis
Eliminate superfluous Utils class.

07/09/07:

14:03 Ticket #157 (More Bio-Formats sample data in various formats) created by curtis
The Bio-Formats web site has a list of all supported formats, with links …
10:49 Ticket #156 (Investigate LOCI Java software development in Eclipse) created by curtis
Eclipse has the ability to import a Java project from an existing Ant …
10:47 Ticket #155 (PixelSizeT disappears) closed by melissa
fixed: Fixed the OME-CA2OME.xslt stylesheet in r2946.
10:45 Changeset [2946] by curtis
Update to latest OME-CA2OME.xslt with PixelSizeT -> TimeIncrement bugfix.
09:21 Ticket #152 (Remove Swing components from OME plugin) closed by melissa
fixed: As of r2945, the OME plugin uses a GenericDialog to show the list of …
09:19 Changeset [2945] by melissa
OME plugin now works with macros.

07/06/07:

22:47 Ticket #155 (PixelSizeT disappears) created by melissa
A few readers attempt to set PixelSizeT; while the value is populated …
18:19 Changeset [2944] by curtis
Minor tweaks.
15:09 Changeset [2943] by melissa
Added OME-TIFF reader; removed OME-TIFF logic from TiffReader.
13:54 Changeset [2942] by melissa
Ignore class files.
13:43 Changeset [2941] by melissa
Fixed how CustomImage works with ImageJ < 1.38n.
13:28 Ticket #153 (Parse metadata in Leica TCS TIFFs) closed by melissa
fixed: Finished in r2940.
13:27 Changeset [2940] by melissa
Added TCS reader - turns out we have a multi-plane TCS TIFF after all.
08:30 Changeset [2939] by melissa
Added Visitech and Leica TCS TIFF.
08:26 Changeset [2938] by melissa
Moved all documentation to 'doc' directory.
08:22 Changeset [2937] by melissa
Added new reader for Improvision TIFFs.

07/05/07:

13:24 Ticket #154 (NullPointerException when populating template fields) created by melissa
Opening tiff/paul/Test_Series052_z000_ch00.tif from the command line, then …
13:19 Ticket #153 (Parse metadata in Leica TCS TIFFs) created by melissa
TIFF files produced by Leica TCS contain extra metadata in the comment, …
13:18 Ticket #152 (Remove Swing components from OME plugin) created by melissa
Right now, the OME download plugin uses Swing to display a table of images …
12:39 Changeset [2936] by melissa
Fixed channel merging prompt to work with macros.
11:58 WikiStart edited by curtis
(diff)

07/02/07:

14:22 Changeset [2935] by melissa
2007 Jul 02 release of LOCI Tools
14:22 Changeset [2934] by melissa
2007 Jul 02 release of LOCI Tools
14:22 Changeset [2933] by melissa
2007 Jul 02 release of LOCI Tools
14:22 Changeset [2932] by melissa
2007 Jul 02 release of LOCI Tools
14:22 Changeset [2931] by melissa
2007 Jul 02 release of LOCI Tools
14:22 Changeset [2930] by melissa
2007 Jul 02 release of LOCI Tools
14:22 Changeset [2929] by melissa
2007 Jul 02 release of LOCI Tools
14:22 Changeset [2928] by melissa
2007 Jul 02 release of LOCI Tools
14:20 Changeset [2927] by melissa
Updated what's new.
14:14 Changeset [2926] by melissa
Added support for 8 bit compressed data.
11:48 Changeset [2925] by melissa
Added Visitech reader; possibly fixed Openlab bug.
07:45 Changeset [2924] by melissa
Added Visitech reader to readers.txt; updated what's new for next release.
07:43 Changeset [2923] by melissa
Removed OriginalMetadata population, for real this time.

06/29/07:

13:37 Ticket #148 (Do something about large quantities of metadata) closed by melissa
fixed: r2922 disables automatic population of OriginalMetadata nodes in …
13:03 Changeset [2922] by melissa
- Don't automatically populate OriginalMetadata nodes in …
09:41 Changeset [2921] by melissa
Use ij.CompositeImage when possible; fixed a few bugs in CustomImage.

06/28/07:

15:14 Changeset [2920] by curtis
Add counts information to FWHM print-out.
13:23 Changeset [2919] by melissa
Don't fail the writeConfig test if the file is invalid.
11:26 WikiStart edited by curtis
(diff)
11:10 Changeset [2918] by melissa
Added method to read a string.
10:49 Changeset [2917] by melissa
Moved MS-RLE codec out of AVIReader.

06/27/07:

15:41 Ticket #151 (Multi-series Slidebook support) closed by melissa
fixed: Fixed in r2916.
15:41 Changeset [2916] by melissa
Added multi-series support.
15:00 TracStart created by curtis
11:42 Ticket #151 (Multi-series Slidebook support) created by melissa
After talking to Steve, it sounds like Slidebook files can have multiple …
10:07 Ticket #108 (Investigate composite image stacks in ImageJ) closed by melissa
fixed: r2915 contains support for composite image stacks. This was achieved by …
10:03 Changeset [2915] by melissa
Added support for composite image stacks.

06/26/07:

21:49 Changeset [2914] by melissa
Cleaned up QuickTime reader - all codec implementations have been moved to …
20:10 Ticket #150 (Assorted peculiar VisBio exceptions) created by sorber
Curtis: here are three errors I found in a log file while cleaning up my …[…]
19:57 Changeset [2913] by sorber
Style checks.
19:52 Changeset [2912] by sorber
Style checks.
18:41 Changeset [2911] by sorber
Reordered API methods for consistency.
18:39 Ticket #90 (Format and organize API methods in OverlayObject and subclasses) closed by sorber
fixed
18:39 Changeset [2910] by sorber
Reordered OverlayObject API methods for consistency.
18:14 Ticket #9 (Improve selection of overlays) closed by sorber
fixed
18:06 Ticket #132 (Write a tutorial for making measurements in VisBio) closed by sorber
fixed: Added tutorial to VisBio help. Made some modifications to text and …
17:55 Ticket #110 (Make invisible overlay objects automatically delete themselves) closed by sorber
worksforme: My fix for this problem is a piecemeal solution: sometimes the objects …
17:52 Ticket #141 (Decide where instance of SpreadsheetLauncher should live) closed by sorber
wontfix: Leave this as is for now. Leave future changes up to Curtis.
17:51 Ticket #139 (Clean up VisBio noded overlays code) closed by sorber
fixed
17:51 Ticket #147 (Polyline array out of bounds exception.) closed by sorber
fixed: Fixed a number of small bugs in polyline including this one.
17:50 Ticket #146 (Prevent ONOs from containing consecutive colocational nodes) closed by sorber
fixed: Prevented consecutive colocational nodes in set, insert, delete, and …
17:38 Changeset [2909] by sorber
Added comments to several files in overlays package. Added overlays/test …
17:35 Changeset [2908] by sorber
Added test folder; moved MathUtilTest inside. Added class Segment2D and …
16:24 Changeset [2907] by sorber
Removed accidentally committed testing code.
14:29 Changeset [2906] by sorber
Added measuring tutorial to built-in help.
10:58 Changeset [2905] by callan
* Optimizations to avoid millions of getSeries() invocations * Optimizing …

06/25/07:

20:45 Changeset [2904] by sorber
Reinstated green circles highlighting polyline nodes (OverlayUtil). Added …
13:12 Changeset [2903] by sorber
Incorporated checks into several OverlayNodedObject methods to prevent …
Note: See TracTimeline for information about the timeline view.