Timeline


and

08/03/07:

19:47 Changeset [3044] by curtis
Return 1 for default pixel/domain multiplier.
19:45 Changeset [3043] by curtis
Validate against OME-XML, not OMECA-XML.
19:29 Changeset [3042] by curtis
* Use an internal ID generation mechanism that produces valid IDs. * Fix …
16:36 Changeset [3041] by curtis
Add OME-XML validation to showinf.
15:02 Changeset [3040] by curtis
Add a hack to filter out stupid clipboard stack traces on Mac OS X.
14:44 Changeset [3039] by melissa
Better pixel type/channel detection.
10:48 Changeset [3038] by curtis
Gracefully handle case where clipboard contents are unavailable (except on …
09:16 Changeset [3037] by melissa
32-bit uncompressed data is now interpreted as 4 channels, 8 bits per …

08/02/07:

13:25 Changeset [3036] by melissa
Fixed bug with multi-channel files that aren't RGB.
12:44 Changeset [3035] by melissa
Remove garbage data from channel name.
12:15 Changeset [3034] by melissa
Fixed bug with Fluoview files that have sizeY == 1.

08/01/07:

16:51 Ticket #163 (Expand VisBio as a toolkit with scriptable components) created by curtis
VisBio already has some connectivity with ImageJ, and with MATLAB, but …
16:38 Ticket #162 (GUI usability improvements) created by curtis
For the v3.5 release, some GUI panels should be consolidated or moved …
16:23 Ticket #161 (Make volume rendering checkbox friendlier to use) created by curtis
When checking the "Render as a volume" checkbox, nothing is done to the …
16:21 Ticket #160 (Clean up overlays tutorial) created by curtis
Abe wrote a really nice tutorial for doing overlays in VisBio, but I do …
16:08 Ticket #13 (Behavior of overlay tools when no data object present) closed by curtis
fixed: To generate the exception mentioned in the previous comment, overlays must …
13:08 Changeset [3033] by melissa
Fixed to work with Java 1.4
11:31 Changeset [3032] by curtis
* Clean up overlay GUI controls a little. * Fix bug with text field not …
10:43 Changeset [3031] by melissa
2007 Aug 01 release of LOCI Tools
10:43 Changeset [3030] by melissa
2007 Aug 01 release of LOCI Tools
10:43 Changeset [3029] by melissa
2007 Aug 01 release of LOCI Tools
10:43 Changeset [3028] by melissa
2007 Aug 01 release of LOCI Tools
10:43 Changeset [3027] by melissa
2007 Aug 01 release of LOCI Tools
10:43 Changeset [3026] by melissa
2007 Aug 01 release of LOCI Tools
10:43 Changeset [3025] by melissa
2007 Aug 01 release of LOCI Tools
10:43 Changeset [3024] by melissa
2007 Aug 01 release of LOCI Tools
10:31 Changeset [3023] by melissa
Updated MetadataStore.setLogicalChannel to be more complete; updated …
10:26 Changeset [3022] by melissa
Bugfixes.

07/31/07:

18:34 Changeset [3021] by melissa
Previous ome-java.jar didn't strip invalid characters out of the XML …
10:03 Changeset [3020] by melissa
Fixed dimension order bug.

07/30/07:

10:07 Changeset [3019] by melissa
Populate original metadata if OME-XML is to be displayed.
10:04 Changeset [3018] by melissa
Fixed NullPointerException.

07/27/07:

16:14 Changeset [3017] by curtis
Tweak Apache Axis2 hack to work better.

07/26/07:

16:16 Changeset [3016] by curtis
Fix problem with generated Javadocs not filling in the footer's year …
15:51 Changeset [3015] by curtis
Add source code links to the Javadoc for every class. I automated the …
14:49 Changeset [3014] by curtis
Remove old temporary import statements.
10:15 Changeset [3013] by melissa
Added OME-TIFF writer. Also added API for writing multi-series files, …
09:11 Changeset [3012] by melissa
Removed date parsing logic from ZVI - no matter how we do it, the date is …

07/25/07:

15:14 WikiStart edited by curtis
Add links to online source code and Javadocs. (diff)
13:17 Changeset [3011] by curtis
Apply workaround for the Apache Axis2 bug in more places.
11:31 Changeset [3010] by curtis
Workaround for bug in Apache Axis2.
10:41 Changeset [3009] by melissa
Moved date conversion logic to DataTools; significant improvements to ZVI …
07:42 Ticket #159 (Add support for compressed ZVI images) created by melissa
The most recent version of the ZVI spec allows for JPEG-compressed pixel …

07/24/07:

10:04 Ticket #158 (Add support for BigTiff) created by melissa
See  http://www.awaresystems.be/imaging/tiff/bigtiff.html

07/23/07:

14:19 Changeset [3008] by curtis
Update cache GUI component to respond to cache events. Now the GUI updates …
12:39 Changeset [3007] by melissa
Make sure RGB flag gets propagated.
08:42 Changeset [3006] by curtis
Tweaked OME2OME-CA.xslt to eliminate Java XSLT compiler warnings.

07/22/07:

14:44 Changeset [3005] by melissa
One last series name fix.

07/20/07:

15:32 Changeset [3004] by curtis
Some work on cache GUI component (not finished yet).
11:33 Changeset [3003] by curtis
Progress on caching logic: * CacheEvent for reporting caching events * …
11:31 Changeset [3002] by curtis
Fix NullPointerException with null objects.
11:22 Changeset [3001] by melissa
Better folder support, including proper handling of nested folders.
09:50 Changeset [3000] by melissa
Prepend folder name to series name.
08:44 Changeset [2999] by melissa
Overrode isMetadataComplete implementation for formats supported by OMERO.

07/19/07:

15:13 Changeset [2998] by melissa
Added "boolean isMetadataComplete()" to IFormatReader API.
12:25 Changeset [2997] by melissa
Fixed timestamps and added a fix for the change to the memory chunk …

07/18/07:

14:17 Changeset [2996] by melissa
Don't throw an exception if a parentless file is given to isThisType.

07/17/07:

14:59 Changeset [2995] by melissa
Don't assume dimension information is present.
12:25 Changeset [2994] by melissa
Added support for 16-bit and < 8-bit data.

07/16/07:

14:06 Changeset [2993] by melissa
2007 Jul 16 release of LOCI Tools
14:06 Changeset [2992] by melissa
2007 Jul 16 release of LOCI Tools
14:06 Changeset [2991] by melissa
2007 Jul 16 release of LOCI Tools
14:06 Changeset [2990] by melissa
2007 Jul 16 release of LOCI Tools
14:06 Changeset [2989] by melissa
2007 Jul 16 release of LOCI Tools
14:06 Changeset [2988] by melissa
2007 Jul 16 release of LOCI Tools
14:06 Changeset [2987] by melissa
2007 Jul 16 release of LOCI Tools
14:06 Changeset [2986] by melissa
2007 Jul 16 release of LOCI Tools
14:04 Changeset [2985] by melissa
Scroll the window so that the next matching line is at the top. No longer …
12:27 Changeset [2984] by curtis
Simply cache source interface a bit.
09:29 Changeset [2983] by curtis
Remove mention of caching improvements until package is more stable.
08:51 Changeset [2982] by melissa
Updated for next release.
08:44 Changeset [2981] by melissa
Fixed to ignore audio tracks and all but the first video track.

07/13/07:

18:01 Changeset [2980] by curtis
Some work on the cache component; add "gui" command to cache tester.
18:00 Changeset [2979] by curtis
Tweaks.
15:10 Changeset [2978] by melissa
Reset template before opening a file.
14:44 Changeset [2977] by curtis
Whitespace.
14:43 Changeset [2976] by curtis
Whitespace.
14:42 Changeset [2975] by curtis
Use LogTools instead of System.out.
14:39 Changeset [2974] by curtis
Use conservative default caching range.
14:37 Changeset [2973] by curtis
Woo, cache logic appears to be working.
12:00 Changeset [2972] by melissa
For now, don't stitch files.
11:53 Changeset [2971] by melissa
Fixed how non-standard pixel types are handled (no longer throws an …
10:01 Changeset [2970] by melissa
* Added missing setLogicalChannel calls. * Added new metadata categories …

07/12/07:

16:03 Changeset [2969] by curtis
A bit of cleanup.
14:56 Changeset [2968] by curtis
Rewrite cache strategy logic.
14:56 Changeset [2967] by curtis
Temporarily comment out some obsolete logic.
14:53 Changeset [2966] by curtis
Eliminate superfluous array allocation from raster/position methods.
14:45 Changeset [2965] by melissa
- Changed default background color, so that all font colors are visible. - …

07/11/07:

12:16 Changeset [2964] by melissa
* Removed unnecessary imports from TiffReader. * Cleaned up ZVI reader …

07/10/07:

17:15 Changeset [2963] by curtis
Fix compile errors.
17:03 Changeset [2962] by curtis
Tweak.
17:01 Changeset [2961] by curtis
A bunch of work on the caching logic. Still broken though.
15:01 Changeset [2960] by melissa
Converted HighInteger/LowInteger fields to real timestamp.
13:50 Changeset [2959] by melissa
Fixed a couple of NullPointerExceptions, and several bugs in the editor …
13:25 Changeset [2958] by melissa
Allow templates to specify the node number for each node in a map, e.g. if …
12:50 Changeset [2957] by melissa
Added setOriginalMetadataPopulated(boolean) and …
12:28 Ticket #154 (NullPointerException when populating template fields) closed by melissa
fixed: Fixed in r2956.
12:27 Changeset [2956] by melissa
Improved population logic.
09:36 Changeset [2955] by melissa
Added searchable text window.
09:35 Changeset [2954] by curtis
* Do not reload preview thumbnail if another used file is selected * …
09:34 Changeset [2953] by melissa
Updated to reflect new cache package structure.
09:31 Changeset [2952] by melissa
Added main method to Cache; fixed package names in sources.
09:16 Changeset [2951] by melissa
Allow sources to be constructed with either a filename or a reader; fixed …
09:10 Changeset [2950] by curtis
No need for package.html, as there are no Java source files in this …
09:05 Changeset [2949] by curtis
Move text documents into doc folder.
09:02 Changeset [2948] by curtis
With only a couple of strategies and sources, it is fine for everything to …
08:59 Changeset [2947] by curtis
Eliminate superfluous Utils class.

07/09/07:

14:03 Ticket #157 (More Bio-Formats sample data in various formats) created by curtis
The Bio-Formats web site has a list of all supported formats, with links …
10:49 Ticket #156 (Investigate LOCI Java software development in Eclipse) created by curtis
Eclipse has the ability to import a Java project from an existing Ant …
10:47 Ticket #155 (PixelSizeT disappears) closed by melissa
fixed: Fixed the OME-CA2OME.xslt stylesheet in r2946.
10:45 Changeset [2946] by curtis
Update to latest OME-CA2OME.xslt with PixelSizeT -> TimeIncrement bugfix.
09:21 Ticket #152 (Remove Swing components from OME plugin) closed by melissa
fixed: As of r2945, the OME plugin uses a GenericDialog to show the list of …
09:19 Changeset [2945] by melissa
OME plugin now works with macros.

07/06/07:

22:47 Ticket #155 (PixelSizeT disappears) created by melissa
A few readers attempt to set PixelSizeT; while the value is populated …
18:19 Changeset [2944] by curtis
Minor tweaks.
15:09 Changeset [2943] by melissa
Added OME-TIFF reader; removed OME-TIFF logic from TiffReader.
13:54 Changeset [2942] by melissa
Ignore class files.
13:43 Changeset [2941] by melissa
Fixed how CustomImage works with ImageJ < 1.38n.
13:28 Ticket #153 (Parse metadata in Leica TCS TIFFs) closed by melissa
fixed: Finished in r2940.
13:27 Changeset [2940] by melissa
Added TCS reader - turns out we have a multi-plane TCS TIFF after all.
08:30 Changeset [2939] by melissa
Added Visitech and Leica TCS TIFF.
08:26 Changeset [2938] by melissa
Moved all documentation to 'doc' directory.
08:22 Changeset [2937] by melissa
Added new reader for Improvision TIFFs.
Note: See TracTimeline for information about the timeline view.