22:35 Changeset [3090] by curtis
Fix XML error with javadoc element.


14:21 Changeset [3089] by curtis
Do not include deprecated methods in Javadoc.
12:29 Changeset [3088] by curtis
Fix the series name fix.
12:13 Changeset [3087] by curtis
More verbose error reporting.
11:41 Changeset [3086] by curtis
Initial skeleton for Bio-Formats ImageJ macro extensions. Several key …
11:40 Changeset [3085] by curtis
11:40 Changeset [3084] by curtis
Add Melissa as an author.
11:40 Changeset [3083] by curtis
Move file grouping constants into format reader interface.
11:38 Changeset [3082] by curtis
Fix bug Christophe Leterrier found with missing series names.
11:08 Ticket #164 (Emissions spectrum view in 2D pane) created by curtis
An emission spectrum view in 2D would be a useful addition to Slim …


16:17 Changeset [3081] by curtis
Minor UI tweaks.
16:09 Changeset [3080] by curtis
Fix problem with getZCTCoords and getIndex for YX dimension orders.
16:05 Changeset [3079] by curtis
Add option to override dimension order (tests DimensionSwapper class).
16:05 Changeset [3078] by curtis
* Fix bug in dimension swapper with incorrect OME-XML Pixels population. …
15:33 Changeset [3077] by curtis
Reorganize display controls to be tabbed instead of sprawling. This will …
14:11 Changeset [3076] by melissa
Fixed to work with omebf.
11:50 Ticket #38 (Arbitrary slicing does not work for large data) closed by curtis
fixed: Fixed in r3075.
11:48 Changeset [3075] by curtis
Fix arbitrary slicing efficiency bug.
11:14 Changeset [3074] by melissa
Preserve user-specified file ordering.
11:12 Changeset [3073] by melissa
Fixed Prairie and ICS readers to work with omebf.


16:14 Changeset [3072] by curtis
Fix typo.
15:24 Changeset [3071] by curtis
Minor tweaks.
14:52 Ticket #160 (Clean up overlays tutorial) closed by curtis
fixed: Fixed in r3069. And r3070 adds Abe to the copyright.
14:51 Changeset [3070] by curtis
Update copyright notice to include Abe.
14:41 Changeset [3069] by curtis
Clean up tutorial a little.
14:29 Changeset [3068] by curtis
* Include PNGs for overlays tutorial in VisBio resources. * Remove …
14:22 Ticket #150 (Assorted peculiar VisBio exceptions) closed by curtis
worksforme: I could not duplicate the TransformLink NullPointerException. Even if a …
14:17 Ticket #161 (Make volume rendering checkbox friendlier to use) closed by curtis
fixed: Done in r3067.
14:16 Changeset [3067] by curtis
Guess at good default opacity settings when volume rendering is first …
14:04 Changeset [3066] by curtis
Disable save check until state logic can be thoroughly fixed.
13:56 Ticket #66 (Set default overlays filename) closed by curtis
fixed: Fixed in r3065.
13:55 Changeset [3065] by curtis
Use reasonable default name when saving or exporting overlay data.
13:42 Ticket #36 (4-channel data does not import correctly) closed by curtis
fixed: Fixed in r3064.
13:41 Changeset [3064] by curtis
Allow 4 range components in ImageFlatField.
13:32 Ticket #115 (Arbitrary slicing can throw NullPointerException) closed by curtis
fixed: Fixed in r3056.
11:44 Changeset [3063] by curtis
Refix initial skeleton schemaLocation attribute.
10:55 Changeset [3062] by curtis
Only report no errors if, in fact, there were no errors.
10:52 Changeset [3061] by curtis
Output all XML validation errors, not just the first.


14:44 Changeset [3060] by melissa
Set the file name as the default image name.
08:55 Changeset [3059] by melissa
Removed plane flipping logic.


14:30 Changeset [3058] by curtis
Workaround for NullPointerException.
14:29 Changeset [3057] by curtis
Add option to toggle stereo displays on or off.
14:20 Changeset [3056] by curtis
Fix stupid dimensional position bug.
13:44 Changeset [3055] by curtis
Fix compile error.
13:36 Changeset [3054] by curtis
Several bugfixes to ImprovisionTiffReader.isThisType.
13:22 Changeset [3053] by curtis
Fix color reset bug when adding transforms to a display. Temporary fix; …


16:33 Changeset [3052] by curtis
Fix problem with OME-XML validation on Linux.
16:30 Changeset [3051] by curtis
Add option to brute force past accessibility restrictions.
15:53 Changeset [3050] by curtis
Better Javadoc.
15:50 Changeset [3049] by curtis
Some improvements to reflected universe functionality: * direct variable …
14:11 Changeset [3048] by curtis
More optimizations for ND2 initialization step.
10:58 Changeset [3047] by melissa
Remove invalid metadata.
08:58 Changeset [3046] by melissa
Removed some unused variables.
08:03 Changeset [3045] by melissa
More efficient initialization of uncompressed files.


19:47 Changeset [3044] by curtis
Return 1 for default pixel/domain multiplier.
19:45 Changeset [3043] by curtis
Validate against OME-XML, not OMECA-XML.
19:29 Changeset [3042] by curtis
* Use an internal ID generation mechanism that produces valid IDs. * Fix …
16:36 Changeset [3041] by curtis
Add OME-XML validation to showinf.
15:02 Changeset [3040] by curtis
Add a hack to filter out stupid clipboard stack traces on Mac OS X.
14:44 Changeset [3039] by melissa
Better pixel type/channel detection.
10:48 Changeset [3038] by curtis
Gracefully handle case where clipboard contents are unavailable (except on …
09:16 Changeset [3037] by melissa
32-bit uncompressed data is now interpreted as 4 channels, 8 bits per …


13:25 Changeset [3036] by melissa
Fixed bug with multi-channel files that aren't RGB.
12:44 Changeset [3035] by melissa
Remove garbage data from channel name.
12:15 Changeset [3034] by melissa
Fixed bug with Fluoview files that have sizeY == 1.


16:51 Ticket #163 (Expand VisBio as a toolkit with scriptable components) created by curtis
VisBio already has some connectivity with ImageJ, and with MATLAB, but …
16:38 Ticket #162 (GUI usability improvements) created by curtis
For the v3.5 release, some GUI panels should be consolidated or moved …
16:23 Ticket #161 (Make volume rendering checkbox friendlier to use) created by curtis
When checking the "Render as a volume" checkbox, nothing is done to the …
16:21 Ticket #160 (Clean up overlays tutorial) created by curtis
Abe wrote a really nice tutorial for doing overlays in VisBio, but I do …
16:08 Ticket #13 (Behavior of overlay tools when no data object present) closed by curtis
fixed: To generate the exception mentioned in the previous comment, overlays must …
13:08 Changeset [3033] by melissa
Fixed to work with Java 1.4
11:31 Changeset [3032] by curtis
* Clean up overlay GUI controls a little. * Fix bug with text field not …
10:43 Changeset [3031] by melissa
2007 Aug 01 release of LOCI Tools
10:43 Changeset [3030] by melissa
2007 Aug 01 release of LOCI Tools
10:43 Changeset [3029] by melissa
2007 Aug 01 release of LOCI Tools
10:43 Changeset [3028] by melissa
2007 Aug 01 release of LOCI Tools
10:43 Changeset [3027] by melissa
2007 Aug 01 release of LOCI Tools
10:43 Changeset [3026] by melissa
2007 Aug 01 release of LOCI Tools
10:43 Changeset [3025] by melissa
2007 Aug 01 release of LOCI Tools
10:43 Changeset [3024] by melissa
2007 Aug 01 release of LOCI Tools
10:31 Changeset [3023] by melissa
Updated MetadataStore.setLogicalChannel to be more complete; updated …
10:26 Changeset [3022] by melissa


18:34 Changeset [3021] by melissa
Previous ome-java.jar didn't strip invalid characters out of the XML …
10:03 Changeset [3020] by melissa
Fixed dimension order bug.


10:07 Changeset [3019] by melissa
Populate original metadata if OME-XML is to be displayed.
10:04 Changeset [3018] by melissa
Fixed NullPointerException.


16:14 Changeset [3017] by curtis
Tweak Apache Axis2 hack to work better.


16:16 Changeset [3016] by curtis
Fix problem with generated Javadocs not filling in the footer's year …
15:51 Changeset [3015] by curtis
Add source code links to the Javadoc for every class. I automated the …
14:49 Changeset [3014] by curtis
Remove old temporary import statements.
10:15 Changeset [3013] by melissa
Added OME-TIFF writer. Also added API for writing multi-series files, …
09:11 Changeset [3012] by melissa
Removed date parsing logic from ZVI - no matter how we do it, the date is …


15:14 WikiStart edited by curtis
Add links to online source code and Javadocs. (diff)
13:17 Changeset [3011] by curtis
Apply workaround for the Apache Axis2 bug in more places.
11:31 Changeset [3010] by curtis
Workaround for bug in Apache Axis2.
10:41 Changeset [3009] by melissa
Moved date conversion logic to DataTools; significant improvements to ZVI …
07:42 Ticket #159 (Add support for compressed ZVI images) created by melissa
The most recent version of the ZVI spec allows for JPEG-compressed pixel …


10:04 Ticket #158 (Add support for BigTiff) created by melissa
See  http://www.awaresystems.be/imaging/tiff/bigtiff.html


14:19 Changeset [3008] by curtis
Update cache GUI component to respond to cache events. Now the GUI updates …
12:39 Changeset [3007] by melissa
Make sure RGB flag gets propagated.
08:42 Changeset [3006] by curtis
Tweaked OME2OME-CA.xslt to eliminate Java XSLT compiler warnings.


14:44 Changeset [3005] by melissa
One last series name fix.


15:32 Changeset [3004] by curtis
Some work on cache GUI component (not finished yet).
11:33 Changeset [3003] by curtis
Progress on caching logic: * CacheEvent for reporting caching events * …
11:31 Changeset [3002] by curtis
Fix NullPointerException with null objects.
11:22 Changeset [3001] by melissa
Better folder support, including proper handling of nested folders.
09:50 Changeset [3000] by melissa
Prepend folder name to series name.
08:44 Changeset [2999] by melissa
Overrode isMetadataComplete implementation for formats supported by OMERO.


15:13 Changeset [2998] by melissa
Added "boolean isMetadataComplete()" to IFormatReader API.
12:25 Changeset [2997] by melissa
Fixed timestamps and added a fix for the change to the memory chunk …


14:17 Changeset [2996] by melissa
Don't throw an exception if a parentless file is given to isThisType.
Note: See TracTimeline for information about the timeline view.