Timeline


and

01/15/08:

16:19 Changeset [3557] by curtis
Fix bugs Gerald Gordon found.
15:09 Changeset [3556] by curtis
A simple example of an ImageJ plugin that uses Bio-Formats to read a file.
13:51 Changeset [3555] by curtis
Fix for omebf with indexed color images.
13:19 Changeset [3554] by melissa
Removed '-fill' option, as it is a duplicate of '-expand'.
12:26 Changeset [3553] by curtis
Fix problem with null Image element during OriginalMetadata population.
12:19 Changeset [3552] by curtis
Dump exception traces if debugging is turned on.
11:35 Changeset [3551] by curtis
Fix problem with Class.getPackage() within ImageJ.
11:25 Changeset [3550] by curtis
Create Image object through more "official" channels, so that CreationDate …
09:50 Changeset [3549] by curtis
Fix some Eclipse warnings.
09:42 Changeset [3548] by curtis
Fix some Eclipse warnings.

01/14/08:

10:10 Changeset [3547] by melissa
Fixed C size calculation.

01/11/08:

19:59 Changeset [3546] by curtis
Turn off debugging flag.
19:53 Changeset [3545] by curtis
Include new command line parameters in usage string.
19:50 Changeset [3544] by curtis
OME Java build with needed xslt stylesheets.
19:40 Changeset [3543] by curtis
Fix problem with FileStitcher and omebf.
19:39 Changeset [3542] by curtis
OME Java version with OMEXMLNode.makeID(String) method needed for …
19:38 Changeset [3541] by curtis
* Fix bug in OriginalMetadata generation. * Assign unique ID to each …
19:12 Changeset [3540] by curtis
Method for obtaining OME-XML schema version of metadata store object.
19:11 Changeset [3539] by curtis
Report schema version of OME-XML being generated.
17:41 Changeset [3538] by curtis
Fix NPE in indentXML.
17:41 Changeset [3537] by curtis
Remove debugging statement.
11:40 Changeset [3536] by melissa
Physical pixel sizes must be multiplied by 1000000, since they are stored …

01/10/08:

14:53 Changeset [3535] by curtis
Workaround for bizarre jikes problem on my system.
13:09 Changeset [3534] by curtis
Fix jikes warnings.

01/09/08:

15:17 Changeset [3533] by melissa
LZWCodec now accepts an optional 'maximum length' argument - if specified, …
12:54 Changeset [3532] by melissa
Added subimage options to ImageInfo and importer plugin.
12:11 Changeset [3531] by melissa
* Added method to ImageTools to get a subimage from a byte array. * …
12:09 Changeset [3530] by melissa
Fixed tiled image bug.
09:28 Changeset [3529] by melissa
Make sure "Info" property is propagated when channels are merged.
08:22 Changeset [3528] by melissa
* Removed debugging statements. * Finished adding JPEG support to …
08:18 Changeset [3527] by melissa
Need space after "windowless=true", otherwise the key/value pair won't be …

01/08/08:

19:22 Changeset [3526] by melissa
Don't assume that a channel name is included in the STK file names.
15:39 Changeset [3525] by curtis
Ignore .class files.
15:38 Changeset [3524] by curtis
Initial version of LOCI codebase with multi-version OME-XML support. This …

12/28/07:

17:50 Changeset [3523] by curtis
Stop cache loader thread if CustomWindow is closed.
17:48 Changeset [3522] by curtis
Add toString method, for debugging.
17:26 Changeset [3521] by curtis
Add missing javadoc.
14:25 Changeset [3520] by melissa
2007 Dec 28 release of LOCI Tools
14:25 Changeset [3519] by melissa
2007 Dec 28 release of LOCI Tools
14:25 Changeset [3518] by melissa
2007 Dec 28 release of LOCI Tools
14:25 Changeset [3517] by melissa
2007 Dec 28 release of LOCI Tools
14:25 Changeset [3516] by melissa
2007 Dec 28 release of LOCI Tools
14:25 Changeset [3515] by melissa
2007 Dec 28 release of LOCI Tools
14:25 Changeset [3514] by melissa
2007 Dec 28 release of LOCI Tools
14:25 Changeset [3513] by melissa
2007 Dec 28 release of LOCI Tools
14:13 Changeset [3512] by melissa
Fixed rounding error.
13:56 Changeset [3511] by curtis
Name thread, and set to min priority.
13:56 Changeset [3510] by curtis
Remove some synchronization that is probably (?) not necessary.
12:53 Changeset [3509] by melissa
Updated what's new for Dec 28 release.
12:52 Changeset [3508] by melissa
Allow signed data to be written.
12:36 Changeset [3507] by melissa
Delegate to ND2Reader if an exception is thrown in initFile.
12:33 Changeset [3506] by melissa
Added caching thread to data browser and fixed a few bugs in …
10:50 Changeset [3505] by melissa
Greatly improved axis size calculation logic.
09:52 Changeset [3504] by melissa
* Don't assume that each TCS TIFF has only one IFD. * Fixed C index …

12/27/07:

22:28 Changeset [3503] by melissa
* Added image name filter. * OMEReader and OMEWriter now use …
17:24 Changeset [3502] by melissa
Uncommented metadata key/value length checking (fixes Metamorph problem). …
17:15 Ticket #230 (Support for sub-channels in ImageJ) closed by melissa
fixed: r3501.
17:14 Ticket #5 (Better channel merging in Bio-Formats Importer) closed by melissa
fixed: Added hooks for spectral projection in r3501. The option to use spectral …
17:14 Changeset [3501] by melissa
Added sub-C labels and hooks for merging using spectral projection.
16:33 Ticket #232 (Fix TIFF performance issues) closed by melissa
invalid: This is/was caused by simultaneously reading 4+ datasets from the Samba …
14:42 Ticket #232 (Fix TIFF performance issues) created by melissa
Some TIFF files take an unacceptably long time to initialize - see …
14:38 Ticket #231 (Improve bfconvert) created by melissa
bfconvert is missing many of the features/command line options that are …
14:34 Ticket #230 (Support for sub-channels in ImageJ) created by melissa
Notes from Curtis: a. Title bar should report sub channel positions (use …
14:32 Ticket #229 (Support multi-series OME-TIFF export) created by melissa
Right now, we only support writing single-series OME-TIFF files. We need …
14:30 Ticket #228 (Add support for writing BigTIFF files) created by melissa
We should somehow allow writing of BigTIFF/BigOME-TIFF files - either add …
09:18 Changeset [3500] by melissa
Check ImageJ version number before calling setOpenAsHyperstack.

12/26/07:

17:55 Ticket #227 (Can't save metadata in ImageJ) closed by melissa
fixed: r3499. Still need to clean up SearchableWindow's layout.
17:54 Changeset [3499] by melissa
Can now save metadata.
15:30 Ticket #227 (Can't save metadata in ImageJ) created by melissa
Attempting to save metadata from the metadata window fails; the search …
14:50 Changeset [3498] by melissa
Rewrote LegacyND2Reader to use our own native bindings.
14:44 Changeset [3497] by melissa
Make sure first reader is initialized.
07:55 Changeset [3496] by melissa
Added "open all series" option.

12/20/07:

13:52 Changeset [3495] by melissa
Re-added search functionality to OME/OMERO downloader - allows searching …
13:49 Changeset [3494] by melissa
Populate MetadataStore fields for all series; fixed bug with datasets that …
13:46 Changeset [3493] by melissa
Don't allow setOpenAsHyperstack(false) on an instance of CompositeImage.
12:43 Changeset [3492] by melissa
Added notes on multi-series support and ChannelFiller; added OME-TIFF to …
10:23 Changeset [3491] by melissa
Smarter series name parsing.
09:56 Changeset [3490] by curtis
Minor tweak for consistency.
09:49 Changeset [3489] by curtis
Add suggestion from Ville Rantanen to improve performance.

12/19/07:

17:33 Changeset [3488] by curtis
Initial version of M function for reading images into MATLAB using …
08:59 Changeset [3487] by melissa
Downloading from OMERO is now much faster. Also, ownership rules are now …

12/17/07:

16:05 Changeset [3486] by melissa
* Better parsing of ImageJ TIFF comments. * Detect variation in SizeZ …
16:01 Changeset [3485] by melissa
Call setNormalized(true) so floating point data is handled correctly; take …
15:59 Changeset [3484] by melissa
Differentiate between series in files and series outside of files.
14:08 Ticket #226 ("Use virtual stack" option for Bio-Formats Importer) closed by melissa
fixed: r3482
14:07 Changeset [3483] by curtis
Fix some bugs in Velocity-based autogenerator.
14:06 Changeset [3482] by melissa
Added option to use a virtual stack.
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