Timeline


and

02/08/08:

17:29 Changeset [3654] by curtis
2008 Feb 08 release of LOCI Tools
17:29 Changeset [3653] by curtis
2008 Feb 08 release of LOCI Tools
17:29 Changeset [3652] by curtis
2008 Feb 08 release of LOCI Tools
17:29 Changeset [3651] by curtis
2008 Feb 08 release of LOCI Tools
17:29 Changeset [3650] by curtis
2008 Feb 08 release of LOCI Tools
17:29 Changeset [3649] by curtis
2008 Feb 08 release of LOCI Tools
17:29 Changeset [3648] by curtis
2008 Feb 08 release of LOCI Tools
17:29 Changeset [3647] by curtis
2008 Feb 08 release of LOCI Tools
17:20 Changeset [3646] by curtis
Update what's new for today's release.
17:13 Changeset [3645] by curtis
Hook up channel widget logic.
16:47 Changeset [3644] by curtis
More fixes and tweaks to macro options (third time's the charm).
16:24 Changeset [3643] by curtis
Refix Data Browser plugin entry.
16:23 Changeset [3642] by curtis
* Fix Data Browser plugin entry. * Tweak macro parameters some more. * …
16:19 Changeset [3641] by curtis
Fix macro recording with newer importer options.
16:16 Changeset [3640] by curtis
Hook up Data Browser animation logic.
15:10 Changeset [3639] by curtis
CacheIndicator can work with Components other than JScrollBar.
15:09 Changeset [3638] by curtis
* Preliminary version of new Data Browser (CustomWindow). * Revised …
15:06 Changeset [3637] by melissa
Added new Metamorph format to list of stuff we want and updated what's new …
14:19 Changeset [3636] by melissa
Miscellaneous bug fixes.
10:40 Changeset [3635] by curtis
Workaround for Mac OS X Java bug in Bio-Formats Importer options dialog's …
10:25 Changeset [3634] by melissa
Fixed RGB channel count calculation for non-indexed images.
10:14 Changeset [3633] by melissa
Pixel sizes must be read as ints, not floats.
09:40 Changeset [3632] by melissa
Fixed pixel size calculation - pixel sizes of 0 were incorrectly reported …
08:56 Changeset [3631] by curtis
Fix stack ordering bug with virtual stacks.
08:54 Changeset [3630] by melissa
Fixed absolute path problem.
08:42 Changeset [3629] by melissa
Fixed a couple of ChannelFiller-related bugs.
08:23 Changeset [3628] by curtis
Add javadoc explaining the distinction between DimensionSwapper and …
06:28 Changeset [3627] by curtis
* Add FormatTools.getReorderedIndex method sans IFormatReader, similar …
06:22 Changeset [3626] by curtis
Fix typo.
06:22 Changeset [3625] by curtis
Make getMetadataString return String rather than StringBuffer.
00:23 Changeset [3624] by curtis
* Move ImageProcessorSource to loci.plugins; use Util.openProcessor …

02/07/08:

22:35 Changeset [3623] by curtis
Make autoscale and virtual stack options mutually exclusive. Otherwise, …
22:14 Changeset [3622] by curtis
Add missing copyright.
22:13 Changeset [3621] by curtis
Add some missing copyrights; miscellaneous fiddling.
14:40 Changeset [3620] by melissa
Make sure that the MetadataStore's root is non-null, and adjust sizeC to …
14:05 Changeset [3619] by melissa
Corrected for Y-axis inversion.
13:09 Ticket #235 (Add support for new Metamorph format) created by melissa
Metamorph 7.5 introduces a new TIFF-based format that is designed to …
09:56 Changeset [3618] by melissa
Check if the original string is null before trying to remove invalid …
09:43 Changeset [3617] by melissa
Added new MetadataStore implementation (FilterMetadata) - this allows us …

02/06/08:

16:02 Changeset [3616] by curtis
Some work on DisplayOptions and ChannelComponent.
15:42 Changeset [3615] by curtis
Eliminate unnecessary imports.
13:34 Changeset [3614] by melissa
No longer throws an exception if setMetadataFiltered(true) was not called.
12:57 Changeset [3613] by melissa
OIB files always use '/' as the file separator.
10:41 Changeset [3612] by melissa
Replaced 1.5-specific "Boolean.parseBoolean..." calls.
10:01 Changeset [3611] by melissa
Files are now initialized once, instead of at the start of every test.
09:52 Changeset [3610] by melissa
Re-added openBytes signatures that were removed in r3569.
09:33 Changeset [3609] by melissa
Added a couple of extra checks to make sure that Z, C and T sizes are …
09:18 Changeset [3608] by melissa
Fixed pixel type detection.
08:22 Changeset [3607] by melissa
Removed unnecessary width hack.

02/05/08:

14:12 Changeset [3606] by curtis
Add copyright notices.
13:27 Changeset [3605] by curtis
Initial version of metadata framework with working object references …
07:20 Changeset [3604] by melissa
Don't reset currentId when opening an OIB file.

02/01/08:

15:44 Ticket #234 (Bio-Formats Importer plugin problems when cropping multiple series) created by curtis
If you attempt to use "Crop on import" with a multi-series dataset, ImageJ …
14:57 Changeset [3603] by curtis
Fix method mismatch.
14:42 Changeset [3602] by curtis
Performance improvements for metadata population.
11:26 Changeset [3601] by melissa
Fixed how we hardcode the OME-XML version.
11:25 Changeset [3600] by melissa
Fixed how we hardcode the OME-XML version.
10:30 Changeset [3599] by melissa
2008 Feb 01 release of LOCI Tools
10:30 Changeset [3598] by melissa
2008 Feb 01 release of LOCI Tools
10:30 Changeset [3597] by melissa
2008 Feb 01 release of LOCI Tools
10:30 Changeset [3596] by melissa
2008 Feb 01 release of LOCI Tools
10:30 Changeset [3595] by melissa
2008 Feb 01 release of LOCI Tools
10:30 Changeset [3594] by melissa
2008 Feb 01 release of LOCI Tools
10:30 Changeset [3593] by melissa
2008 Feb 01 release of LOCI Tools
10:30 Changeset [3592] by melissa
2008 Feb 01 release of LOCI Tools
10:02 Changeset [3591] by melissa
Tweaked reader guide to reflect changes in package structure; added note …
09:38 Changeset [3590] by melissa
Updated what's new for today's release.
09:30 Changeset [3589] by curtis
Eliminate jikes warning.
09:24 Changeset [3588] by melissa
Eliminate "premature end of file" warning.
08:49 Changeset [3587] by melissa
Make sure endianness is set correctly.

01/31/08:

14:56 Changeset [3586] by curtis
Add filename and path as FileInfo parameters. Hopefully this will fix the …
14:17 Changeset [3585] by melissa
Commented out calls to MetadataStore.setDetectorSettings*.
14:14 Changeset [3584] by melissa
Temporarily force 2003-FC OME-XML to be generated.
13:10 Changeset [3583] by curtis
Readd additional character filter that I inadvertently did not commit …
11:56 Changeset [3582] by melissa
Correct for pixel size unit other than microns.
11:39 Changeset [3581] by melissa
* Fixed MJPB regression. * Fixed how we retrieve a subimage from a tiled …

01/30/08:

16:19 Changeset [3580] by curtis
Fix problems with bfconvert not filtering original metadata key/value …
15:37 Changeset [3579] by melissa
* Added convenience method to RandomAccessStream that reads a …
13:34 Changeset [3578] by curtis
Initial version of autogenerated convertMetadata implementation.
11:08 Changeset [3577] by melissa
Remove most unprintable characters from metadata keys and values.

01/29/08:

14:10 Changeset [3576] by curtis
Progress on OME-XML support. * Add entity counter methods. * Add …
14:08 Changeset [3575] by curtis
Eliminate unnecessary imports.
12:46 Changeset [3574] by curtis
Eliminate jikes warnings.
08:45 Changeset [3573] by melissa
Make sure metadata trailing whitespace is removed from metadata values; …
08:14 Changeset [3572] by melissa
Fixed TiffData insertion logic to work with OME-XML that contains a Plane …

01/25/08:

14:42 Ticket #233 (Improve time performance of subimage methods) created by melissa
The majority of openBytes(int, byte[], int, int, int, int) implementations …
14:34 Changeset [3571] by curtis
Add brief installation notes.
14:25 Changeset [3570] by curtis
Updated bfopen MATLAB script incorporating additional suggestions from …
09:55 Changeset [3569] by melissa
* Progress on metadata population for ~10 formats. * Better …

01/23/08:

16:51 Changeset [3568] by curtis
Better OME-XML generation error messages.
16:21 Changeset [3567] by curtis
* Lots of improvements and bugfixes to OME-XML MetadataTools methods. * …

01/22/08:

16:24 Changeset [3566] by curtis
Generate base classes before version-specific classes, like before.
16:23 Changeset [3565] by curtis
Add entity retrieval methods that return Object for agnostic use with …

01/18/08:

16:05 Ticket #177 (Additional plugin options) closed by curtis
fixed: We now have separate options to split time points, split focal planes, and …
12:12 Changeset [3564] by curtis
Whitespace.
12:11 Changeset [3563] by curtis
Simplify -series option and clean up whitespace.

01/17/08:

12:41 Changeset [3562] by curtis
Fix NumberFormatException in PixelSizeC parsing.
11:31 Changeset [3561] by curtis
Fix NPE when checking isThisType for non-existent files.
11:21 Changeset [3560] by curtis
Whitespace.

01/16/08:

15:04 Changeset [3559] by melissa
Removed a bunch of obsolete logic and mapped more metadata to OME-XML.
13:32 Changeset [3558] by allison
Added -series option to BFconvert

01/15/08:

16:19 Changeset [3557] by curtis
Fix bugs Gerald Gordon found.
15:09 Changeset [3556] by curtis
A simple example of an ImageJ plugin that uses Bio-Formats to read a file.
13:51 Changeset [3555] by curtis
Fix for omebf with indexed color images.
13:19 Changeset [3554] by melissa
Removed '-fill' option, as it is a duplicate of '-expand'.
12:26 Changeset [3553] by curtis
Fix problem with null Image element during OriginalMetadata population.
12:19 Changeset [3552] by curtis
Dump exception traces if debugging is turned on.
11:35 Changeset [3551] by curtis
Fix problem with Class.getPackage() within ImageJ.
11:25 Changeset [3550] by curtis
Create Image object through more "official" channels, so that CreationDate …
09:50 Changeset [3549] by curtis
Fix some Eclipse warnings.
09:42 Changeset [3548] by curtis
Fix some Eclipse warnings.

01/14/08:

10:10 Changeset [3547] by melissa
Fixed C size calculation.

01/11/08:

19:59 Changeset [3546] by curtis
Turn off debugging flag.
19:53 Changeset [3545] by curtis
Include new command line parameters in usage string.
19:50 Changeset [3544] by curtis
OME Java build with needed xslt stylesheets.
19:40 Changeset [3543] by curtis
Fix problem with FileStitcher and omebf.
19:39 Changeset [3542] by curtis
OME Java version with OMEXMLNode.makeID(String) method needed for …
19:38 Changeset [3541] by curtis
* Fix bug in OriginalMetadata generation. * Assign unique ID to each …
19:12 Changeset [3540] by curtis
Method for obtaining OME-XML schema version of metadata store object.
19:11 Changeset [3539] by curtis
Report schema version of OME-XML being generated.
17:41 Changeset [3538] by curtis
Fix NPE in indentXML.
17:41 Changeset [3537] by curtis
Remove debugging statement.
11:40 Changeset [3536] by melissa
Physical pixel sizes must be multiplied by 1000000, since they are stored …

01/10/08:

14:53 Changeset [3535] by curtis
Workaround for bizarre jikes problem on my system.
13:09 Changeset [3534] by curtis
Fix jikes warnings.

01/09/08:

15:17 Changeset [3533] by melissa
LZWCodec now accepts an optional 'maximum length' argument - if specified, …
12:54 Changeset [3532] by melissa
Added subimage options to ImageInfo and importer plugin.
12:11 Changeset [3531] by melissa
* Added method to ImageTools to get a subimage from a byte array. * …
12:09 Changeset [3530] by melissa
Fixed tiled image bug.
09:28 Changeset [3529] by melissa
Make sure "Info" property is propagated when channels are merged.
08:22 Changeset [3528] by melissa
* Removed debugging statements. * Finished adding JPEG support to …
08:18 Changeset [3527] by melissa
Need space after "windowless=true", otherwise the key/value pair won't be …
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