Timeline


and

07/09/08:

15:51 Changeset [4179] by melissa
Added logic to reorder channels based on metadata values.
14:09 Ticket #307 (Split IndexedColorModel into Index16ColorModel and Index32ColorModel) closed by melissa
fixed: (In [4178]) Moved 16-bit lookup table support from IndexedColorModel to …
14:09 Changeset [4178] by melissa
Moved 16-bit lookup table support from IndexedColorModel to …
13:44 Ticket #221 (Add support for Olympus APL file format) closed by melissa
fixed: (In [4177]) * Tweaked MDBParser API to be more usable. * Added Olympus APL …
13:44 Changeset [4177] by melissa
* Tweaked MDBParser API to be more usable. * Added Olympus APL reader - …
13:34 Ticket #310 (Overhaul Bio-Formats Importer) created by curtis
The Bio-Formats Importer plugin has become quite complex. The logic is …
13:29 Ticket #309 (Document supported metadata fields in each format) created by curtis
The Bio-Formats web site has a handy table showing all the supported file …
13:20 Ticket #308 (Sort data repository into different categories) created by curtis
Our repository of test files contains a large quantity of data: over 140 …
13:00 Ticket #307 (Split IndexedColorModel into Index16ColorModel and Index32ColorModel) created by curtis
Core Java has an IndexColorModel class for 24-bit RGB look-up tables keyed …
10:41 Changeset [4176] by melissa
Fixed a couple of offset bugs in mdbtools - the constituent MDB files in …

07/08/08:

15:12 Changeset [4175] by curtis
Fix some bugs and add more constructor options, including null linked …
15:07 Changeset [4174] by curtis
Remove "image processor" from list of source types.
15:06 Changeset [4173] by curtis
Fix thread title.
14:37 Changeset [4172] by ansari
14:36 Changeset [4171] by ansari
14:30 Changeset [4170] by ansari
Updating ij.jar to nightly build (1.41f)
14:28 Changeset [4169] by ansari
Updating flow app files
13:18 Changeset [4168] by melissa
Set a default creation date, if one is not present in the file.
07:53 Changeset [4167] by melissa
Fixed Windows path name bug.

07/07/08:

16:10 Changeset [4166] by melissa
Fixed tag length and plane size calculation bugs.
13:42 Changeset [4165] by melissa
Added support for MINC MRI format. Moved all NetCDF reflection logic into …

07/03/08:

12:25 Changeset [4164] by curtis
Fix loci_tools.jar directory check for batch files.
11:04 Changeset [4163] by melissa
Added support for writing APNG files and reworked saveImage delegation - …
11:00 Changeset [4162] by melissa
No need to create a new byte array.
08:47 Changeset [4161] by melissa
Populate WellSample Index.
08:02 Changeset [4160] by melissa
Check the script's directory (not the working directory) for …

07/02/08:

15:03 WikiStart edited by curtis
(diff)
14:44 Ticket #306 (Min/max threshold for region of interest) created by curtis
It would be nice to be able to specify a minimum and maximum intensity …
14:43 Changeset [4159] by melissa
Fixed .tim file parsing bug.
14:40 Ticket #305 (Handle mixed OME/non-OME XML blocks) created by curtis
When looking for OME-XML blocks, Bio-Formats assumes the entire tree will …
09:34 Changeset [4158] by melissa
Handle case where we have more data files than the number of images.

07/01/08:

15:09 Changeset [4157] by melissa
2008 Jul 01 release of LOCI Tools
15:09 Changeset [4156] by melissa
2008 Jul 01 release of LOCI Tools
15:09 Changeset [4155] by melissa
2008 Jul 01 release of LOCI Tools
15:09 Changeset [4154] by melissa
2008 Jul 01 release of LOCI Tools
15:09 Changeset [4153] by melissa
2008 Jul 01 release of LOCI Tools
15:09 Changeset [4152] by melissa
2008 Jul 01 release of LOCI Tools
15:09 Changeset [4151] by melissa
2008 Jul 01 release of LOCI Tools
15:09 Changeset [4150] by melissa
2008 Jul 01 release of LOCI Tools
15:05 Changeset [4149] by melissa
Updated what's new for today's release.
12:11 Ticket #276 (Make ND2 reader faster) closed by melissa
fixed: Time/memory improvements finished in r4148.
12:10 Changeset [4148] by melissa
Some ND2 cleanup - non-JPEG files should initialize slightly faster now.
09:37 Changeset [4147] by melissa
Shortened format names, when possible.
09:20 Changeset [4146] by melissa
Fixed SPW bug - Well is now properly represented as a child of Plate.
08:39 Changeset [4145] by melissa
Fixed constructor to actually compile.
08:26 Changeset [4144] by melissa
Added ClassList constructor that takes an additional Class parameter, …

06/30/08:

13:13 Changeset [4143] by melissa
Added flag to disable file stitching.
12:20 Changeset [4142] by melissa
Fixed typo.

06/27/08:

13:52 Changeset [4141] by melissa
Added checks for invalid note entries.
13:01 Changeset [4140] by melissa
Removed AriolReader from the list.
12:26 Changeset [4139] by melissa
Improved plane access time and memory consumption for ND2 files that use …
10:47 Ticket #303 (Add support for animated PNGs) closed by melissa
fixed: r4138
10:46 Changeset [4138] by melissa
Added Animated PNG reader - closes ticket #303.
09:32 Changeset [4137] by melissa
Retrieve pixel sizes for the correct series (instead of the first series).

06/26/08:

15:44 WikiStart edited by curtis
(diff)
15:37 Ticket #59 (Create OME Notes web page) closed by curtis
fixed: I have made a note that development of OME Notes has ceased in favor of …
14:18 Ticket #69 (Adapt Data Converter into a Bio-Formats export GUI component) closed by curtis
wontfix: The Bio-Formats Importer plugin can now open a dataset in ImageJ as a …
14:10 Ticket #72 (More powerful template engine) closed by curtis
wontfix: Work on OME Notes has ceased in favor of …
14:10 Ticket #73 (Graphical template editor) closed by curtis
wontfix: Work on OME Notes has ceased in favor of …
14:09 Ticket #74 (Leverage the template engine across several distinct use cases) closed by curtis
wontfix: Work on OME Notes has ceased in favor of …
14:08 Ticket #101 (Look into existing electronic notebooks) closed by curtis
wontfix: Work on OME Notes has ceased in favor of …
14:08 Ticket #126 (Investigate leveraging existing ontology/terminology solutions) closed by curtis
wontfix: Work on OME Notes has ceased in favor of …
13:58 Ticket #81 (More OME-TIFF code examples) closed by curtis
duplicate: We've decided to go with Ice for access from native code, so this ticket …
13:56 Ticket #304 (Create documentation on using Bio-Formats with Ice) created by curtis
 Ice allows communication with Bio-Formats via a …
13:49 Ticket #58 (Update OME plugin for ImageJ web site) closed by curtis
fixed: I didn't update the screenshot yet, but the text has been changed to …
13:48 Ticket #70 (Additional OME-TIFF sample data) closed by curtis
fixed: As of a few weeks ago, the tubhiswt datasets have been updated to use the …

06/25/08:

12:40 Ticket #303 (Add support for animated PNGs) created by melissa
Details on APNG at  http://animatedpng.com. There is a plugin for ImageJ …

06/23/08:

12:22 Changeset [4136] by curtis
Add methods to facilitate generation of group statistics.
11:18 Changeset [4135] by curtis
Add first revision comment for each file format.
10:47 Changeset [4134] by curtis
Initial version of metadata property documentation generator. No groups …
09:29 Changeset [4133] by curtis
Remove OMERO jars from build path to avoid cyclical dependencies.
08:27 Changeset [4132] by melissa
* Added MetadataTools utility method to set a default image creation date. …
06:26 Changeset [4131] by curtis
Fix classpath to use default JRE instead of Mac OS X 1.4.

06/22/08:

10:16 Changeset [4130] by melissa
Populate time interval in ImageJ calibration, if possible.
09:58 Changeset [4129] by melissa
Fixed time increment units.

06/21/08:

14:46 Changeset [4128] by melissa
Fixed remainder of openBytes copying problems.
08:45 Changeset [4127] by melissa
Fixed array copying in openBytes.
07:29 Changeset [4126] by melissa
Fixed NPE.
04:12 Changeset [4125] by curtis
Fix build errors and clean up loci.apps.flow package.
03:30 Changeset [4124] by curtis
Remove superfluous loci.jvmlink classes.
03:16 Changeset [4123] by melissa
Allow OIB/OIF files to be stitched. Stitching is still not allowed for …

06/20/08:

17:51 Changeset [4122] by melissa
Populate PhysicalSizeZ and TimeIncrement for FV1000 files.
11:51 Changeset [4121] by curtis
Chris's min/max store interface for use by OMERO.importer.

06/17/08:

19:35 Changeset [4120] by ansari
19:35 Changeset [4119] by ansari
Created folder remotely
11:02 Changeset [4118] by curtis
Reject Micromanager datasets with empty metadata.

06/16/08:

13:45 Changeset [4117] by melissa
Changed signatures for set*Ref and get*Ref - instead of setting/getting …
12:56 Changeset [4116] by melissa
Fixed a couple of bugs that prevented some OME-TIFF files from being …
07:46 Changeset [4115] by melissa
Fixed dimension order for RGB stacks.

06/13/08:

13:29 Changeset [4114] by melissa
Fix for binned data.
06:23 Changeset [4113] by melissa
More meaningful exceptions if pixel data is not found.

06/12/08:

22:47 Changeset [4112] by melissa
Added getter/setter for Image's InstrumentRef. Might be some bugs in the …

06/11/08:

17:23 Changeset [4111] by melissa
* Fixed ArrayIndexOutOfBounds for ZVI files that have no timestamps. * …

06/10/08:

14:30 Changeset [4110] by melissa
Updated OME-XML reader to use significantly less memory. Initializing an …
14:23 Ticket #302 (Add support for datasets produced by Vevo 770) created by melissa
We now have several datasets produced by a VisualSonics Vevo 770 system …
10:52 Changeset [4109] by melissa
Fixed bug where openBytes returned a buffer filled with zeros.

06/09/08:

14:08 Changeset [4108] by curtis
Print an informative warning if file pattern could not be detected.
13:16 Changeset [4107] by curtis
Add one-time warning if user is running an older version of ImageJ.
10:14 Changeset [4106] by melissa
* If "Metadata only" option was selected in the importer, don't open …
09:23 Changeset [4105] by melissa
Don't apply LUTs to FV1000 images.
08:55 Changeset [4104] by melissa
Removed overriden close().
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