13:29 Changeset [4337] by melissa
* Don't allow channel count to be overwritten for RGB Improvision TIFF …
12:58 Changeset [4336] by melissa
* Added 'String getInputOrder()' API method to IFormatReader, which …
10:11 Changeset [4335] by melissa
Refactored so that CoreMetadata only stores data for one series. …


14:02 Changeset [4334] by melissa
Minor fixes to a couple of openBytes methods; removed unnecessary int …
13:17 Changeset [4333] by melissa
Use an instance of CacheComponent to handle cache modification.
13:05 Changeset [4332] by melissa
Fixed distance calculation when caching backwards.
11:45 Changeset [4331] by curtis
Fix Eclipse project JAR dependencies.
11:31 Changeset [4330] by melissa
Added logic to reorder channels in Leica LIF files.


15:01 Ticket #318 (Improve Nikon NEF support) created by melissa
Nikon NEF support is far from robust - we do not handle the Nikon …
14:57 Ticket #317 (Add file format extension filter to Bio-Formats Exporter) created by curtis
Right now the Bio-Formats Exporter relies on the specified filename's …
13:48 Changeset [4329] by melissa
Added copyright notice and class comment.
12:02 Changeset [4328] by melissa
Some TIFFs have an array of Strings in the artist field.
12:00 Changeset [4327] by melissa
Added options window to data browser. It's functional, but needs more …
11:53 Changeset [4326] by ansari
10:59 Changeset [4325] by melissa
Added option to disable macro recording.
10:31 Changeset [4324] by melissa
Added logic to merge channels in virtual stacks.


08:07 Changeset [4323] by nor
Continued improvements to slim plotter curve fitting.


21:54 Changeset [4322] by ansari
Updating flow cytometry app code.
14:20 Changeset [4321] by melissa
Added colorizing support for virtual stacks (including the data browser).
12:10 Changeset [4320] by melissa
Added LUT support for Openlab LIFF files; fixed a couple of bugs in …
11:12 Changeset [4319] by melissa
Make sure that values returned by isIndexed and isFalseColor are …


14:59 Changeset [4318] by melissa
Allow for more than two series per file.
11:01 Changeset [4317] by melissa
Data browser caching now (mostly) works. Still need to add an options …


18:10 Ticket #316 (Investigate using non-custom type for BufferedImages) created by melissa
Right now, Bio-Formats always constructs BufferedImages with the type set …
15:20 Changeset [4316] by melissa
Wrap ArrayIndexOutOfBoundsException in a FormatException; re-added some of …
15:15 Changeset [4315] by melissa
Fixed series concatenation.
13:56 Changeset [4314] by melissa
Fixed more bugs exposed by test suite. Also fixed bug in Metamorph STK …
11:04 Changeset [4313] by melissa
LZWCodec must extend BaseCodec.
10:59 Changeset [4312] by melissa
Added faster LZW codec, courtesy of Mikhail Kovtun.


14:06 Ticket #57 (Execute ImageJ macros on virtual stacks) closed by melissa
fixed: This feature is mostly functional in r4311. Needs a bit more work to get …
14:02 Changeset [4311] by melissa
First cut at applying macros to virtual stacks. Has not been thoroughly …


13:30 Changeset [4310] by melissa
Fixed remainder of dimension swapping/shuffling bugs. Changed …
11:24 Changeset [4309] by melissa
Fixed a couple of problems with snapshot (RGB) images.
11:17 Changeset [4308] by melissa
Rearranged calls to IFormatReader.close() - no longer throws an exception …


16:38 Changeset [4307] by ansari
Updated code, with correct copyright info and package name
12:51 Changeset [4306] by melissa
Print a warning if we try to merge more than 4 channels.
08:45 Changeset [4305] by melissa
Close the IFormatReader once we're finished with it.
08:07 Changeset [4304] by melissa
Fixed off-by-1 in BFVirtualStack - ImageJ indexes planes from 1, where …


14:34 Changeset [4303] by curtis
Quick hack to fix visualization of 2-component per-pixel lifetime images.
02:53 Changeset [4302] by nor
* Fixed issue where pressing stop button would not stop iteration * …


15:58 Changeset [4301] by curtis
Fix some problems in channel separator and dimension swapper. Still bugs …
15:24 Changeset [4300] by melissa
Fixed various bugs exposed by test suite.
15:17 Changeset [4299] by curtis
Better support for mixed Java versions; more OMEROWriter cleanup.
14:55 Changeset [4298] by curtis
Fix compile errors.
14:27 Changeset [4297] by curtis
Some cleanup. Still need to fix compile problems.
13:51 Changeset [4296] by allison
Fixed bug in id String.
13:47 Changeset [4295] by allison
Working OMEROReader without reflected universe code.
13:45 Changeset [4294] by allison
Progress on main method
13:05 Changeset [4293] by curtis
Update some package descriptions.
10:07 Changeset [4292] by curtis
Update link to Javadocs.
10:05 WikiStart edited by curtis


13:51 Changeset [4291] by curtis
Fix some dimension swapper bugs... but there are still problems.
13:00 Changeset [4290] by curtis
Add Bio-Formats logo at various resolutions (not bundled into any JARs).
12:28 Changeset [4289] by curtis
Add logos for OME and Bio-Formats to About dialog boxes.


09:02 Changeset [4288] by nor
Fixed edge case curve fitting estimate code.
08:44 Changeset [4287] by melissa
Fixed compile error.
08:31 Changeset [4286] by melissa
Removed debugging statement.
08:10 Changeset [4285] by melissa
Added OME-XML writer.


14:17 Changeset [4284] by melissa
Slightly modified jmagick.jar to fix class loading problem in ImageJ.
12:02 Changeset [4283] by melissa
ChannelFiller now applies lookup tables if isFalseColor() == true.
11:36 Changeset [4282] by melissa
Don't assume that every plane has the same lookup table.
11:00 Changeset [4281] by melissa
Fixed bug that caused BufferedImages with type TYPE_INT_RGB to be treated …
10:28 Changeset [4280] by melissa
Corrected file index calculation when dimensions have been swapped.


18:15 Changeset [4279] by melissa
Fixed image count calculation.
16:28 Changeset [4278] by curtis
Update Javadoc links.
12:38 Changeset [4277] by curtis
Fix package statements and tweak formatting.
12:36 Changeset [4276] by curtis
Better recognition of credentials strings.
12:36 Changeset [4275] by curtis
First cut at "Download from OMERO" and "Upload to OMERO" menu options.
12:05 Changeset [4274] by curtis
Fix some jikes warnings and remove some obsolete comments.
09:43 Changeset [4273] by nor
Continued work on estimation for bad curves. Still in progress, still …
02:23 Ticket #315 (Investigate how to handle ROIs and overlays within proprietary file ...) created by melissa
Several supported file formats can contain overlays - notably Zeiss ZVI, …
01:48 Changeset [4272] by melissa
Fix for datasets that don't have .stk files.
00:08 Changeset [4271] by melissa
Added writeLong utility method (fixes TiffTools compile error).


23:15 Changeset [4270] by melissa
Fixed overwriteIFDValue to handle BigTIFF files.
22:19 Changeset [4269] by melissa
Allow the number of bytes per strip to be > 8192 if the number of bytes …
18:19 Changeset [4268] by melissa
* Fixed various bugs exposed by test suite. * Another patch to …
16:18 Changeset [4267] by ansari
12:33 Changeset [4266] by curtis
Close file at the end of the Bio-Formats MATLAB script.
12:19 Changeset [4265] by curtis
Reorganize some packages: * Move OME/OMERO database connectivity layer …
12:12 Changeset [4264] by curtis
Add hooks for "Download from OME" and "Upload to OME" menu options.


15:11 Changeset [4263] by curtis
Set mime type for metadata fields summary doc.
15:10 Changeset [4262] by curtis
Add summary tables for supported metadata fields.
11:44 Changeset [4261] by curtis
Save importer preferences earlier, in case plugin crashes.


12:25 Changeset [4260] by melissa
Call MetadataTools.populatePixels after core metadata fields have been …
11:34 Changeset [4259] by melissa
Fixed bug in NetcdfTools that prevented Imaris 5.5 files from opening.
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