Timeline


and

10/27/08:

18:37 Changeset [4568] by curtis
Broaden LOCI Plugins Shortcut Window drag and drop support (fixes it on …
18:36 Changeset [4567] by curtis
Allow command line parameter to override default number of characters.
14:50 Changeset [4566] by melissa
* Fixed how FV1000 reader handles XZ and XT scans. * Fixed relative path …

10/25/08:

13:48 Changeset [4565] by curtis
Fix some Javadoc source paths.
12:21 Changeset [4564] by curtis
Increase Javadoc memory.

10/24/08:

20:48 Changeset [4563] by curtis
Add Bio-Formats Ice framework to build system.
20:27 Changeset [4562] by curtis
Bio-Formats Ice code compiles now.
20:01 Changeset [4561] by curtis
Progress on Bio-Formats Ice infrastructure.
19:22 Changeset [4560] by curtis
Add ability to autogenerate Ice interfaces and server-side wrapper …
16:10 Changeset [4559] by curtis
Fix more depends clauses in root build script.
15:53 Changeset [4558] by ansari
Fixed dependencies for flow cytometry
13:12 Changeset [4557] by melissa
Re-added objective model to Deltavision and updated metadata support docs …
13:07 Changeset [4556] by melissa
Fixed bug with 8-bit LuraWave data.
12:48 Ticket #318 (Improve Nikon NEF support) closed by melissa
fixed: (In [4555]) Significantly improved support for Nikon NEF support; closes …
12:48 Changeset [4555] by melissa
Significantly improved support for Nikon NEF support; closes #318.
10:41 Changeset [4554] by melissa
Updated metadata support docs to reflect latest Deltavision additions.
10:13 Changeset [4553] by melissa
Better objective data parsing.

10/23/08:

15:12 Changeset [4552] by curtis
Whitespace.
14:30 Changeset [4551] by curtis
Remove *.class and *.swp from SVN ignore lists.
14:29 Changeset [4550] by curtis
Split out AWT-specific functionality from loci.formats.ImageTools into new …
14:27 Changeset [4549] by curtis
Add hack to exclude LOCI source code URLs from long line reporting.
12:19 Changeset [4548] by curtis
Add ability to toggle windowless setting individually for each reader.
08:10 Changeset [4547] by melissa
Updated to use loci.common.RandomAccessStream.

10/22/08:

15:22 Changeset [4546] by curtis
Add Bio-Formats OME-XML 2008-09 metadata store.
15:05 Changeset [4545] by curtis
Add 2008-09 OME-XML schema version (and fix a code generation bug).
14:52 Changeset [4544] by melissa
Use strict date parsing.
14:13 Changeset [4543] by melissa
Fixed how .mtb files are detected.
13:09 Changeset [4542] by curtis
Fix a bug in node retrieval cache.
13:09 Changeset [4541] by curtis
Use new IMetadata interface where appropriate.
12:56 Changeset [4540] by curtis
Make "clean" target clear out old JARs.
11:59 Changeset [4539] by melissa
Fixed offset to length of file name.
11:58 Changeset [4538] by curtis
Add loci-common and mdbtools-java to JAR checker. This is a temporary …
11:25 Changeset [4537] by curtis
Fix docs target.

10/21/08:

16:36 Changeset [4536] by curtis
Eliminate libs.* global variables.
16:16 Changeset [4535] by curtis
Fix LOCI Common copyright.
16:15 Changeset [4534] by curtis
Update dependency documentation.
14:36 Changeset [4533] by curtis
Add sanity test that compares scanned dependencies with each component's …
11:11 Changeset [4532] by curtis
In build.xml comment, use text generated by dependency scanning program.

10/20/08:

19:16 Changeset [4531] by curtis
Script to scan source code for dependencies and print a nice summary.
19:15 Changeset [4530] by curtis
Tweak dependency list, and separate out reflected (optional) dependencies.
14:32 Changeset [4529] by curtis
Move forked projects into components/forks subtree.
13:52 Changeset [4528] by curtis
Fix project dependencies for JVMLink.
13:49 Changeset [4527] by curtis
Increase max memory for docs target.
13:39 Changeset [4526] by melissa
Use initCause (instead of setStackTrace) to do exception chaining.
13:38 Changeset [4525] by curtis
Ignore build folder for common component.
13:30 Changeset [4524] by curtis
Add IMetadata interface for metadata implementations that support both …
13:02 Changeset [4523] by melissa
Fixed compile errors.
12:42 Changeset [4522] by curtis
Add ability to feed stdin into XML window test method.
12:24 Changeset [4521] by melissa
Moved several common I/O and utility classes to new component.
11:22 Changeset [4520] by curtis
Fix compile errors.
07:58 Ticket #323 (Add support for writing JPEG2000) closed by melissa
fixed: (In [4519]) * Implemented compression methods in JPEG and JPEG2000 codecs. …
07:58 Changeset [4519] by melissa
* Implemented compression methods in JPEG and JPEG2000 codecs. * Added …

10/17/08:

17:12 Changeset [4518] by curtis
Add DefaultPixels property for Image entity.
16:53 Changeset [4517] by curtis
* Remove OTFSettings entity in favor of OTF property for …
16:32 Changeset [4516] by curtis
Clarify referring vs referenced node methods. Eliminates most of the OME …
15:58 Changeset [4515] by curtis
Add OTFSettings entity for associating an OTF with a LogicalChannel.
09:29 Changeset [4514] by melissa
Detect and apply DICOM rescaling function.
09:12 Changeset [4513] by melissa
Eliminated unnecessary calls to MetadataTools.populatePixels in …
08:49 Changeset [4512] by melissa
Don't allow colorizing or splitting with virtual stacks or the Data …
07:57 Changeset [4511] by melissa
Fixed how we check for the end of an MS Video stream.
07:51 Changeset [4510] by melissa
Ignore 'build' directory.

10/16/08:

16:36 Changeset [4509] by melissa
Added boolean parameter to MetadataTools.populatePixels to toggle whether …
14:41 Changeset [4508] by curtis
Fix initFile debug line.
14:31 Changeset [4507] by curtis
* Ugly hack to speed up metadata store population. * Add Experiment …
14:08 Changeset [4506] by curtis
* Include methods for obtaining one child node at a time. * Clean up …
13:30 Changeset [4505] by curtis
Add methods for getting a single child node or element.
11:39 Changeset [4504] by melissa
Removed JMagick native library, and added missing classpath entry for JAI …
11:19 Changeset [4503] by melissa
* Added JAI ImageIO component, with modifications to support YCbCr color …

10/15/08:

14:15 Changeset [4502] by curtis
Add status message for OME metadata population.
12:16 Changeset [4501] by curtis
Fix more unused import warnings.
11:55 Changeset [4500] by curtis
Fix unused import warnings in OME-XML Java library.

10/14/08:

16:34 Changeset [4499] by curtis
Fix some Eclipse compiler warnings.
15:42 Changeset [4498] by curtis
Minor updates to Bio-Formats reader guide.
14:58 Changeset [4497] by curtis
Update SLIM plotter to do list.
14:55 Changeset [4496] by curtis
Display numerical output for active channel rather than always channel #0.
14:54 Changeset [4495] by curtis
Fix bugs in binning and curve estimation.
14:48 Changeset [4494] by curtis
Add option to display standardized OME metadata on import.
14:40 Changeset [4493] by curtis
Centralize identical dumpXML method implementations.
14:39 Changeset [4492] by curtis
Add partial Experiment entity; flesh out ID descriptions; add some …
14:17 Changeset [4491] by curtis
Add padded border around browser options window, to make it look nicer.
14:10 Changeset [4490] by curtis
JFrame extension for XML tree window.
11:32 Changeset [4489] by curtis
Be less annoying when loci.ome.io classes are missing.

10/13/08:

12:46 Ticket #324 (Add support for Minolta MRW format) closed by melissa
fixed: (In [4488]) Added Minolta MRW support; closes #324.
12:46 Changeset [4488] by melissa
Added Minolta MRW support; closes #324.

10/10/08:

18:35 Changeset [4487] by curtis
Better exception reporting when launching plugins from the shortcut …
18:16 Changeset [4486] by curtis
Graphical TIFF comment editor.
11:14 Ticket #324 (Add support for Minolta MRW format) created by melissa
See  http://www.chauveau-central.net/mrw-format/mrw-format.txt.
10:56 Changeset [4485] by curtis
Add big version of LOCI logo.
08:57 Changeset [4484] by melissa
Fixed off-by-1 bug and offset to channel metadata.
07:39 Changeset [4483] by melissa
Changed format name to "Amersham Biosciences GEL".

10/09/08:

07:53 Changeset [4482] by melissa
Print warning if we have a 64-bit (double) image and "-normalize" is not …

10/08/08:

18:20 Changeset [4481] by curtis
Lots of bugfixes and improvements to curve fitting package and associated …

10/07/08:

15:54 Changeset [4480] by melissa
Fixed bug with RLE-compressed RGB images.
14:37 Changeset [4479] by melissa
Added remainder of GCI metadata.
12:39 Changeset [4478] by melissa
Updated ICS reader to include support for GCI metadata.

10/06/08:

15:52 Changeset [4477] by curtis
Add toggle buttons for controlling mouse functionality in displays.

10/04/08:

12:18 Changeset [4476] by melissa
Don't assume that unknown tags have a string value - check the VR first.

10/03/08:

14:03 Changeset [4475] by melissa
Fixed pixel size bug.

10/02/08:

15:45 Changeset [4474] by melissa
If pixels are signed, apply a calibration function so that the histogram …
12:57 Changeset [4473] by melissa
Include sub-C dimensions in Data Browser cache.
09:08 Ticket #323 (Add support for writing JPEG2000) created by melissa
We should be able to write plain JPEG2000 files, and perhaps TIFF files …

10/01/08:

16:36 Changeset [4472] by curtis
Add separate Eclipse project for each component.
14:57 Changeset [4471] by melissa
Fixed a couple of bugs.
13:00 Changeset [4470] by curtis
Fix up Data Browser's support for sub-C dimensional axes.
11:48 Changeset [4469] by melissa
Added "select all" and "deselect all" buttons to series chooser.
10:23 Ticket #265 (Separate widget for each sub-C dimension) closed by melissa
fixed: (In [4468]) Added sub-C widgets to data browser; closes #265.
10:23 Changeset [4468] by melissa
Added sub-C widgets to data browser; closes #265.
09:00 Ticket #322 (Eliminate native library dependencies) created by melissa
Bio-Formats currently depends on two native libraries for reading lossless …
07:43 Changeset [4467] by melissa
Minor cleanup in codec package.

09/30/08:

12:00 Changeset [4466] by curtis
Update to do list.
11:59 Changeset [4465] by curtis
Move view toggles to View menu; allow simultaneous surface & lines views.

09/29/08:

23:21 Changeset [4464] by curtis
Add a couple more bugs to the list.
23:19 Changeset [4463] by curtis
Flesh out remaining tasks.
23:19 Changeset [4462] by curtis
Minor tweaks.
22:52 Changeset [4461] by curtis
Fix a major bug in chi2 error computation.
22:52 Changeset [4460] by curtis
Update to do list.
17:31 Changeset [4459] by curtis
Miscellaneous tweaks.
17:07 Changeset [4458] by curtis
Ensure curve fit estimation always processes [firstIndex, lastIndex].
16:45 Changeset [4457] by curtis
Display number of iterations for fitted curves.
16:45 Changeset [4456] by curtis
Fix XY swap bug.
16:07 Changeset [4455] by curtis
Better curve fitting cutoff logic.
14:40 Changeset [4454] by curtis
Fix bugs with FWHM and curve fit cutoff line plotting.
12:52 Changeset [4453] by melissa
Don't populate Plane attributes if one (or more) of getSizeZ(), getSizeC() …
12:50 Changeset [4452] by curtis
Use ICurveFitter interface instead of CurveFitter base class where …
12:46 Changeset [4451] by curtis
* Migrate some non-GA-specific code into base curve fitter class. * …
12:29 Changeset [4450] by melissa
Fixed NPE.
09:30 Changeset [4449] by melissa
Re-added test targets.
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