Timeline


and

11/12/08:

11:13 Changeset [4611] by melissa
Added libraries referenced through reflection to test suite's classpath.
08:10 Changeset [4610] by melissa
Ignore date strings with unknown formatting, instead of throwing a NPE.
00:17 Changeset [4609] by curtis
* Update Eclipse projects to match the latest codebase. * Add Eclipse …

11/11/08:

22:27 Changeset [4608] by curtis
Reorganize data structures to be more component-centric.

11/10/08:

12:17 Changeset [4607] by melissa
* Fixed bug with opening RGB float/double images. * Fixed how signed data …
10:58 Changeset [4606] by melissa
If isThisType(String) delegates to isThisType(RandomAccessStream), make …

11/09/08:

21:28 Changeset [4605] by melissa
Fixed placement of TCSReader and TillVisionReader in readers list.

11/07/08:

19:03 Changeset [4604] by curtis
Add Ant targets for compiling and running the Bio-Formats autogenerator in …
13:53 Changeset [4603] by melissa
* More fixes to TillVision support. * Fixed minor problem with Leica …

11/06/08:

13:50 Ticket #312 (Improve TillVision support) closed by melissa
fixed: (In [4602]) Added support for pixels embedded in TILLVision workspace …
13:50 Changeset [4602] by melissa
Added support for pixels embedded in TILLVision workspace files. Closes …
07:58 Changeset [4601] by melissa
Fixed bug in image name parsing.

11/05/08:

14:50 Changeset [4600] by melissa
Ignore extra backslashes in pixel size string.
14:29 Changeset [4599] by melissa
DICOM reader now populates PhysicalSizeX and PhysicalSizeY.
13:15 Changeset [4598] by melissa
Updated metadata support documentation to reflect recent IPLab changes.
08:54 Changeset [4597] by melissa
Fixed NPE that occurred when jai_imageio.jar was placed in …
08:00 Changeset [4596] by melissa
Populate TimeIncrement as well as PlaneTiming->DeltaT.

11/04/08:

16:26 Changeset [4595] by melissa
Check the actual length of a scalebar annotation before skipping over it.

11/03/08:

13:55 Ticket #321 (Investigate adding FindBugs targets) closed by curtis
fixed: (In [4594]) Add findbugs target to check a component for program bugs. …
13:55 Changeset [4594] by curtis
Add findbugs target to check a component for program bugs. Closes #321.
12:13 Ticket #328 (Parse time interval tag in IPLab files) closed by melissa
fixed: (In [4593]) Parse timestamps, if they exist; closes #328.
12:13 Changeset [4593] by melissa
Parse timestamps, if they exist; closes #328.
12:02 Changeset [4592] by curtis
Fix up SVN revision detection a bit.
10:47 Changeset [4591] by melissa
Default DICOM rescale slope should be 1.0 (not 0.0).
09:52 Ticket #328 (Parse time interval tag in IPLab files) created by melissa
From Tony Collins: […]
08:39 Changeset [4590] by melissa
* Added Javadoc comments to loci.formats.CoreMetadata. * Added "boolean …
07:51 Ticket #327 (Allow ImageJ plugin to check for updates) created by melissa
The ImageJ plugin should have an option to automatically check for new …
00:23 Changeset [4589] by curtis
Comment out uncertain order range logic for now, since it has no real …

10/31/08:

13:31 Changeset [4588] by curtis
More tweaks and notes.
13:22 Changeset [4587] by curtis
Return metadata table as part of cell structure.

10/30/08:

19:04 Changeset [4586] by curtis
Add commented out LuraWave JAR file for Flex support.
18:55 Changeset [4585] by curtis
Minor tweaks.
18:40 Changeset [4584] by curtis
* Add SVN revision token to source code filtering, so that About …
18:00 Changeset [4583] by curtis
Improved version of bfopen MATLAB script that returns the entire dataset …
13:38 Changeset [4582] by melissa
Some improvements to TillVision support.
09:02 Changeset [4581] by melissa
Pad image stack if the number of slices is not a multiple of the number of …

10/29/08:

20:19 Ticket #275 (Review importer options) closed by curtis
fixed: The options are more clearly organized now, and the mutual exclusion logic …
19:01 Changeset [4580] by curtis
Finish up initial version of Bio-Formats Importer documentation.
17:07 Changeset [4579] by melissa
* Assume that PhysicalSizeX and PhysicalSizeY are equal if either is …
16:04 Changeset [4578] by curtis
* Incorporate View5D & Image5D stack order requirements into options …
12:19 Ticket #326 (Allow "merge to RGB" and "split channels" options to be used ...) created by melissa
We should allow the "merge channels to RGB" and "split channels" import …
10:49 Ticket #325 (More flexible window naming) created by curtis
John Alexander writes: "In my slidebook files, every single image usually …
09:32 Ticket #320 (Fix compressed 16-bit Flex files) closed by melissa
fixed: (In [4577]) Added support for 16-bit data to LuraWave codec; closes #320.
09:32 Changeset [4577] by melissa
Added support for 16-bit data to LuraWave codec; closes #320.
00:28 Changeset [4576] by curtis
Add description for stack viewer option.
00:01 Changeset [4575] by curtis
Use a better workaround for Mac OS X component refresh bug.

10/28/08:

22:45 Changeset [4574] by curtis
Ensure drag and drop operation returns in a timely manner.
16:37 Changeset [4573] by curtis
Progress on improved Bio-Formats Import Options dialog box.
15:06 Changeset [4572] by melissa
Use image height and image count (instead of just image count) to …
15:00 Changeset [4571] by melissa
If we try to read an invalid page number, attempt to read the last page …
12:48 Changeset [4570] by melissa
Fixed how ChannelFiller handles indexed color images when isFalseColor() …
01:45 Changeset [4569] by curtis
Progress on nicer Bio-Formats Import Options dialog.

10/27/08:

18:37 Changeset [4568] by curtis
Broaden LOCI Plugins Shortcut Window drag and drop support (fixes it on …
18:36 Changeset [4567] by curtis
Allow command line parameter to override default number of characters.
14:50 Changeset [4566] by melissa
* Fixed how FV1000 reader handles XZ and XT scans. * Fixed relative path …

10/25/08:

13:48 Changeset [4565] by curtis
Fix some Javadoc source paths.
12:21 Changeset [4564] by curtis
Increase Javadoc memory.

10/24/08:

20:48 Changeset [4563] by curtis
Add Bio-Formats Ice framework to build system.
20:27 Changeset [4562] by curtis
Bio-Formats Ice code compiles now.
20:01 Changeset [4561] by curtis
Progress on Bio-Formats Ice infrastructure.
19:22 Changeset [4560] by curtis
Add ability to autogenerate Ice interfaces and server-side wrapper …
16:10 Changeset [4559] by curtis
Fix more depends clauses in root build script.
15:53 Changeset [4558] by ansari
Fixed dependencies for flow cytometry
13:12 Changeset [4557] by melissa
Re-added objective model to Deltavision and updated metadata support docs …
13:07 Changeset [4556] by melissa
Fixed bug with 8-bit LuraWave data.
12:48 Ticket #318 (Improve Nikon NEF support) closed by melissa
fixed: (In [4555]) Significantly improved support for Nikon NEF support; closes …
12:48 Changeset [4555] by melissa
Significantly improved support for Nikon NEF support; closes #318.
10:41 Changeset [4554] by melissa
Updated metadata support docs to reflect latest Deltavision additions.
10:13 Changeset [4553] by melissa
Better objective data parsing.

10/23/08:

15:12 Changeset [4552] by curtis
Whitespace.
14:30 Changeset [4551] by curtis
Remove *.class and *.swp from SVN ignore lists.
14:29 Changeset [4550] by curtis
Split out AWT-specific functionality from loci.formats.ImageTools into new …
14:27 Changeset [4549] by curtis
Add hack to exclude LOCI source code URLs from long line reporting.
12:19 Changeset [4548] by curtis
Add ability to toggle windowless setting individually for each reader.
08:10 Changeset [4547] by melissa
Updated to use loci.common.RandomAccessStream.

10/22/08:

15:22 Changeset [4546] by curtis
Add Bio-Formats OME-XML 2008-09 metadata store.
15:05 Changeset [4545] by curtis
Add 2008-09 OME-XML schema version (and fix a code generation bug).
14:52 Changeset [4544] by melissa
Use strict date parsing.
14:13 Changeset [4543] by melissa
Fixed how .mtb files are detected.
13:09 Changeset [4542] by curtis
Fix a bug in node retrieval cache.
13:09 Changeset [4541] by curtis
Use new IMetadata interface where appropriate.
12:56 Changeset [4540] by curtis
Make "clean" target clear out old JARs.
11:59 Changeset [4539] by melissa
Fixed offset to length of file name.
11:58 Changeset [4538] by curtis
Add loci-common and mdbtools-java to JAR checker. This is a temporary …
11:25 Changeset [4537] by curtis
Fix docs target.

10/21/08:

16:36 Changeset [4536] by curtis
Eliminate libs.* global variables.
16:16 Changeset [4535] by curtis
Fix LOCI Common copyright.
16:15 Changeset [4534] by curtis
Update dependency documentation.
14:36 Changeset [4533] by curtis
Add sanity test that compares scanned dependencies with each component's …
11:11 Changeset [4532] by curtis
In build.xml comment, use text generated by dependency scanning program.

10/20/08:

19:16 Changeset [4531] by curtis
Script to scan source code for dependencies and print a nice summary.
19:15 Changeset [4530] by curtis
Tweak dependency list, and separate out reflected (optional) dependencies.
14:32 Changeset [4529] by curtis
Move forked projects into components/forks subtree.
13:52 Changeset [4528] by curtis
Fix project dependencies for JVMLink.
13:49 Changeset [4527] by curtis
Increase max memory for docs target.
13:39 Changeset [4526] by melissa
Use initCause (instead of setStackTrace) to do exception chaining.
13:38 Changeset [4525] by curtis
Ignore build folder for common component.
13:30 Changeset [4524] by curtis
Add IMetadata interface for metadata implementations that support both …
13:02 Changeset [4523] by melissa
Fixed compile errors.
12:42 Changeset [4522] by curtis
Add ability to feed stdin into XML window test method.
12:24 Changeset [4521] by melissa
Moved several common I/O and utility classes to new component.
11:22 Changeset [4520] by curtis
Fix compile errors.
07:58 Ticket #323 (Add support for writing JPEG2000) closed by melissa
fixed: (In [4519]) * Implemented compression methods in JPEG and JPEG2000 codecs. …
07:58 Changeset [4519] by melissa
* Implemented compression methods in JPEG and JPEG2000 codecs. * Added …

10/17/08:

17:12 Changeset [4518] by curtis
Add DefaultPixels property for Image entity.
16:53 Changeset [4517] by curtis
* Remove OTFSettings entity in favor of OTF property for …
16:32 Changeset [4516] by curtis
Clarify referring vs referenced node methods. Eliminates most of the OME …
15:58 Changeset [4515] by curtis
Add OTFSettings entity for associating an OTF with a LogicalChannel.
09:29 Changeset [4514] by melissa
Detect and apply DICOM rescaling function.
09:12 Changeset [4513] by melissa
Eliminated unnecessary calls to MetadataTools.populatePixels in …
08:49 Changeset [4512] by melissa
Don't allow colorizing or splitting with virtual stacks or the Data …
07:57 Changeset [4511] by melissa
Fixed how we check for the end of an MS Video stream.
07:51 Changeset [4510] by melissa
Ignore 'build' directory.

10/16/08:

16:36 Changeset [4509] by melissa
Added boolean parameter to MetadataTools.populatePixels to toggle whether …
14:41 Changeset [4508] by curtis
Fix initFile debug line.
14:31 Changeset [4507] by curtis
* Ugly hack to speed up metadata store population. * Add Experiment …
14:08 Changeset [4506] by curtis
* Include methods for obtaining one child node at a time. * Clean up …
13:30 Changeset [4505] by curtis
Add methods for getting a single child node or element.
11:39 Changeset [4504] by melissa
Removed JMagick native library, and added missing classpath entry for JAI …
11:19 Changeset [4503] by melissa
* Added JAI ImageIO component, with modifications to support YCbCr color …

10/15/08:

14:15 Changeset [4502] by curtis
Add status message for OME metadata population.
12:16 Changeset [4501] by curtis
Fix more unused import warnings.
11:55 Changeset [4500] by curtis
Fix unused import warnings in OME-XML Java library.

10/14/08:

16:34 Changeset [4499] by curtis
Fix some Eclipse compiler warnings.
15:42 Changeset [4498] by curtis
Minor updates to Bio-Formats reader guide.
14:58 Changeset [4497] by curtis
Update SLIM plotter to do list.
14:55 Changeset [4496] by curtis
Display numerical output for active channel rather than always channel #0.
14:54 Changeset [4495] by curtis
Fix bugs in binning and curve estimation.
14:48 Changeset [4494] by curtis
Add option to display standardized OME metadata on import.
14:40 Changeset [4493] by curtis
Centralize identical dumpXML method implementations.
14:39 Changeset [4492] by curtis
Add partial Experiment entity; flesh out ID descriptions; add some …
14:17 Changeset [4491] by curtis
Add padded border around browser options window, to make it look nicer.
14:10 Changeset [4490] by curtis
JFrame extension for XML tree window.
11:32 Changeset [4489] by curtis
Be less annoying when loci.ome.io classes are missing.

10/13/08:

12:46 Ticket #324 (Add support for Minolta MRW format) closed by melissa
fixed: (In [4488]) Added Minolta MRW support; closes #324.
12:46 Changeset [4488] by melissa
Added Minolta MRW support; closes #324.
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