Timeline


and

12/01/08:

16:21 Changeset [4665] by curtis
Fix tools targets to play nicely with new copy-jars logic.
14:10 Changeset [4664] by curtis
* Add copy-jars target to fix runtime classpath dependencies. * Remove …
13:06 Changeset [4663] by melissa
Stop decoding once the output buffer has been filled.

11/28/08:

11:33 Changeset [4662] by melissa
Fixed tiling bug.
09:36 Ticket #332 (Report field count for multifield data) created by melissa
All readers that support multiple fields (Fluoview/Andor TIFF, InCell, …

11/26/08:

23:09 Changeset [4661] by melissa
Initialize CoreMetadata objects before attempting to populate them.
14:43 Ticket #331 (Fix FV1000 reader to handle OIF version 2) closed by melissa
fixed: (In [4660]) * Fixed a couple of metadata parsing bugs. * Added FV1000 …
14:43 Changeset [4660] by melissa
* Fixed a couple of metadata parsing bugs. * Added FV1000 version 2 …
09:50 Changeset [4659] by melissa
Fixed ArrayIndexOutOfBounds when determining if a series is indexed color.
09:24 Ticket #331 (Fix FV1000 reader to handle OIF version 2) created by melissa
Version 2 of the FV1000 spec contains minor changes which prevent …
08:04 Changeset [4658] by melissa
Use ImagePlus.getImageStack() to retrieve the stack to be exported. This …

11/25/08:

13:54 Changeset [4657] by melissa
Be smarter about how LogicalChannel data is set.
11:29 Changeset [4656] by melissa
Link LightSourceSettings and LogicalChannel if Laser properties are …
11:19 Changeset [4655] by melissa
Set Image.InstrumentRef when appropriate.
10:59 Changeset [4654] by melissa
* Added remainder of Detector/Objective/LightSource -> Image links. * …
08:08 Changeset [4653] by melissa
Fixed openBytes Javadoc comment.

11/24/08:

20:28 Ticket #330 (Cannot read OME-TIFF files saved from Image5D window) closed by melissa
fixed: Nominally fixed in r4652. The problem was that when exporting from an …
20:18 Ticket #329 (Exception when saving from Image5D window) closed by melissa
fixed: (In [4652]) Workaround for known bug in exporting from an Image5D window. …
20:18 Changeset [4652] by melissa
Workaround for known bug in exporting from an Image5D window. Closes …
13:40 Changeset [4651] by melissa
Connect reference entities (DetectorSettings, LightSourceSettings) to an …
12:08 Changeset [4650] by melissa
Added utility methods for finding a value in an unsorted int array.
12:06 Changeset [4649] by melissa
Use getSeriesCount() instead of checking the length of the CoreMetadata …
11:54 Changeset [4648] by melissa
Call MetadataTools.populatePixels before calling any other MetadataStore …
09:57 Changeset [4647] by melissa
Display a more informative message if NetCDF library is not found.
08:22 Changeset [4646] by melissa
Don't use LSM's "DetectionChannel" model to populate LogicalChannel data.

11/21/08:

13:23 Changeset [4645] by curtis
Style.
10:50 Changeset [4644] by melissa
Fixed timestamp offset and a couple of bugs in Objective parsing.

11/20/08:

23:31 Changeset [4643] by melissa
More thorough parsing of Objective data.
20:40 Changeset [4642] by melissa
Added LightSourceSettings.Wavelength, DetectorSettings.Binning, and …
16:46 Changeset [4641] by curtis
Improve memory usage for LM.
14:55 Changeset [4640] by curtis
Fix bugs in LM curve fitting. Works well now (but needs more RAM than GA).

11/19/08:

18:07 Changeset [4639] by ghall
fix mistake in LMCurveFitter
13:05 Ticket #330 (Cannot read OME-TIFF files saved from Image5D window) created by melissa
To reproduce: 0. "File>Open Samples>Fluorescent Cells" in ImageJ 1. …
12:57 Ticket #329 (Exception when saving from Image5D window) created by melissa
Attempting to save some Image5D stacks using the Bio-Formats Exporter …
11:37 Changeset [4638] by melissa
Updated DetectorSettings entities and added ObjectiveSettings entities.
10:58 Changeset [4637] by curtis
More verbose variable names for cached nodes, to avoid name clashes.

11/17/08:

15:31 Changeset [4636] by gbonamy
Added a compression type initialization. Alternatively, check if …
14:08 Changeset [4635] by gbonamy
Added to facilitate import in Eclipse. Classpath needs to be updated to …
14:07 Changeset [4634] by gbonamy
Added to facilitate import under Eclipse
14:01 Changeset [4633] by gbonamy
Updated classpath to refer to JAI_ImageIO developed at LOCI and necessary …
13:59 Changeset [4632] by gbonamy
Added support for JPEG and JPEG2000 compression in Tiff files such as …
13:59 Changeset [4631] by melissa
ICS files produced by Huygens should always be interpreted as unsigned.
13:58 Changeset [4630] by gbonamy
Added Support for JPEG and JPEG2000 compression Fixed bug with zlib …
13:52 Changeset [4629] by gbonamy
Added support for JPEG and JPEG2000
13:35 Changeset [4628] by gbonamy
Fixed bug causing compress to stay in an infinite loop
13:35 Changeset [4627] by gbonamy
Added default values for compression options
13:34 Changeset [4626] by gbonamy
Added error catching for improperly registered JAI_ImageIO. Added default …
13:29 Changeset [4625] by gbonamy
Some of selected resources were not committed.
12:43 Ticket #284 (ZVI reader ignores xy positions beyond the first) closed by melissa
fixed: (In [4624]) * A few additions to ZVI metadata mapping. * Fixed tiled image …
12:42 Changeset [4624] by melissa
* A few additions to ZVI metadata mapping. * Fixed tiled image bug. …

11/14/08:

20:15 Changeset [4623] by curtis
Whitespace.
14:51 Changeset [4622] by melissa
Added comment explaining why the JPEG2000Codec doesn't use …
14:41 Changeset [4621] by melissa
Fixed Z and T size calculation for when isMetadataCollected() returns …
11:40 Changeset [4620] by melissa
Fixed bug with 16-bit indexed color DICOM images.
10:03 Changeset [4619] by melissa
Deltavision stores the exposure time in milliseconds, not seconds.

11/13/08:

15:59 Changeset [4618] by curtis
Remove unnecessary JAR references.
15:21 Changeset [4617] by curtis
Remove test targets from root build file (use targets in …
15:18 Changeset [4616] by curtis
Add default value for testng.memory property.
14:40 Changeset [4615] by melissa
Fixed sample unpacking bug.
14:37 Changeset [4614] by melissa
A few more improvements to Deltavision metadata support.
12:40 Changeset [4613] by melissa
Improved metadata support for BioRad PIC datasets.
11:16 Changeset [4612] by curtis
* Add exec target to each component. * Miscellaneous tweaks to build …

11/12/08:

11:13 Changeset [4611] by melissa
Added libraries referenced through reflection to test suite's classpath.
08:10 Changeset [4610] by melissa
Ignore date strings with unknown formatting, instead of throwing a NPE.
00:17 Changeset [4609] by curtis
* Update Eclipse projects to match the latest codebase. * Add Eclipse …

11/11/08:

22:27 Changeset [4608] by curtis
Reorganize data structures to be more component-centric.

11/10/08:

12:17 Changeset [4607] by melissa
* Fixed bug with opening RGB float/double images. * Fixed how signed data …
10:58 Changeset [4606] by melissa
If isThisType(String) delegates to isThisType(RandomAccessStream), make …

11/09/08:

21:28 Changeset [4605] by melissa
Fixed placement of TCSReader and TillVisionReader in readers list.

11/07/08:

19:03 Changeset [4604] by curtis
Add Ant targets for compiling and running the Bio-Formats autogenerator in …
13:53 Changeset [4603] by melissa
* More fixes to TillVision support. * Fixed minor problem with Leica …

11/06/08:

13:50 Ticket #312 (Improve TillVision support) closed by melissa
fixed: (In [4602]) Added support for pixels embedded in TILLVision workspace …
13:50 Changeset [4602] by melissa
Added support for pixels embedded in TILLVision workspace files. Closes …
07:58 Changeset [4601] by melissa
Fixed bug in image name parsing.

11/05/08:

14:50 Changeset [4600] by melissa
Ignore extra backslashes in pixel size string.
14:29 Changeset [4599] by melissa
DICOM reader now populates PhysicalSizeX and PhysicalSizeY.
13:15 Changeset [4598] by melissa
Updated metadata support documentation to reflect recent IPLab changes.
08:54 Changeset [4597] by melissa
Fixed NPE that occurred when jai_imageio.jar was placed in …
08:00 Changeset [4596] by melissa
Populate TimeIncrement as well as PlaneTiming->DeltaT.

11/04/08:

16:26 Changeset [4595] by melissa
Check the actual length of a scalebar annotation before skipping over it.

11/03/08:

13:55 Ticket #321 (Investigate adding FindBugs targets) closed by curtis
fixed: (In [4594]) Add findbugs target to check a component for program bugs. …
13:55 Changeset [4594] by curtis
Add findbugs target to check a component for program bugs. Closes #321.
12:13 Ticket #328 (Parse time interval tag in IPLab files) closed by melissa
fixed: (In [4593]) Parse timestamps, if they exist; closes #328.
12:13 Changeset [4593] by melissa
Parse timestamps, if they exist; closes #328.
12:02 Changeset [4592] by curtis
Fix up SVN revision detection a bit.
10:47 Changeset [4591] by melissa
Default DICOM rescale slope should be 1.0 (not 0.0).
09:52 Ticket #328 (Parse time interval tag in IPLab files) created by melissa
From Tony Collins: […]
08:39 Changeset [4590] by melissa
* Added Javadoc comments to loci.formats.CoreMetadata. * Added "boolean …
07:51 Ticket #327 (Allow ImageJ plugin to check for updates) created by melissa
The ImageJ plugin should have an option to automatically check for new …
00:23 Changeset [4589] by curtis
Comment out uncertain order range logic for now, since it has no real …
Note: See TracTimeline for information about the timeline view.