Timeline


and

12/11/08:

19:05 Changeset [4695] by gbonamy
Fixed populating the metadata for DimensionsPhysicalSizeX, …
18:54 Changeset [4694] by gbonamy
Modification of formating of the error messages
15:30 Changeset [4693] by curtis
Add macro functions for querying plane timings, and add an example macro.
14:37 Changeset [4692] by melissa
Only apply the rescaling function to signed data.
14:25 Changeset [4691] by melissa
Prevent isThisType from throwing a NPE if the file doesn't have a parent …
14:15 Changeset [4690] by melissa
If the .nd file contains a creation date, use it to populate …
13:45 Changeset [4689] by curtis
Increase javadoc memory to 512MB, and fail on error.
13:15 Changeset [4688] by melissa
Fixed problems with displaying signed data.
10:24 Changeset [4687] by melissa
Fixed bug in plane size detection.

12/10/08:

10:45 Changeset [4686] by melissa
* Fixed SignedColorModel to better handle two-channel data. * Don't pad …
10:42 Changeset [4685] by melissa
Explicitly close the writer.
08:28 Changeset [4684] by melissa
Parse timestamps.

12/09/08:

22:23 Changeset [4683] by melissa
Some improvements to MicroManager metadata support. Still need to parse …
16:13 Changeset [4682] by melissa
* Fixed bug with 16-bit RLE-compressed DICOM files. * Fixed JPEG-2000 …
08:11 Changeset [4681] by melissa
Modified Codec API to be a little more intuitive. The compress and …

12/08/08:

14:52 Changeset [4680] by melissa
Fix for > 4 GB LSM files.
13:05 Changeset [4679] by curtis
A little GUI for testing Java memory behavior.
08:30 Changeset [4678] by melissa
Don't close the stream if it is null.

12/05/08:

08:31 Changeset [4677] by melissa
Fixed exception when scaling MNG images.

12/04/08:

17:45 Changeset [4676] by curtis
Add a second, simpler signature for ImageInfo.testRead().
10:29 Changeset [4675] by curtis
Remove obsolete constant.
09:48 Changeset [4674] by melissa
Instead of assuming that all TIFF files are present in the metadata file, …

12/03/08:

21:19 Changeset [4673] by melissa
Fixed a few more bugs exposed by the test suite.
17:55 Changeset [4672] by melissa
If Objective data is present, populate the Iris property.
17:36 Changeset [4671] by melissa
Added the Iris property of Objective to the MetadataStore and …
17:30 Changeset [4670] by melissa
If zlib data is truncated, return what can be decompressed instead of …
10:31 Changeset [4669] by melissa
Fixed IndexOutOfBounds if objective string is set to "unknown".

12/02/08:

17:48 Changeset [4668] by melissa
Improved Objective/LightSource population.
12:45 Changeset [4667] by melissa
Fixed image count reported by PrairieReader when the base file is a TIFF.
11:27 Changeset [4666] by melissa
Fixed a handful of bugs exposed by the test suite.

12/01/08:

16:21 Changeset [4665] by curtis
Fix tools targets to play nicely with new copy-jars logic.
14:10 Changeset [4664] by curtis
* Add copy-jars target to fix runtime classpath dependencies. * Remove …
13:06 Changeset [4663] by melissa
Stop decoding once the output buffer has been filled.

11/28/08:

11:33 Changeset [4662] by melissa
Fixed tiling bug.
09:36 Ticket #332 (Report field count for multifield data) created by melissa
All readers that support multiple fields (Fluoview/Andor TIFF, InCell, …

11/26/08:

23:09 Changeset [4661] by melissa
Initialize CoreMetadata objects before attempting to populate them.
14:43 Ticket #331 (Fix FV1000 reader to handle OIF version 2) closed by melissa
fixed: (In [4660]) * Fixed a couple of metadata parsing bugs. * Added FV1000 …
14:43 Changeset [4660] by melissa
* Fixed a couple of metadata parsing bugs. * Added FV1000 version 2 …
09:50 Changeset [4659] by melissa
Fixed ArrayIndexOutOfBounds when determining if a series is indexed color.
09:24 Ticket #331 (Fix FV1000 reader to handle OIF version 2) created by melissa
Version 2 of the FV1000 spec contains minor changes which prevent …
08:04 Changeset [4658] by melissa
Use ImagePlus.getImageStack() to retrieve the stack to be exported. This …

11/25/08:

13:54 Changeset [4657] by melissa
Be smarter about how LogicalChannel data is set.
11:29 Changeset [4656] by melissa
Link LightSourceSettings and LogicalChannel if Laser properties are …
11:19 Changeset [4655] by melissa
Set Image.InstrumentRef when appropriate.
10:59 Changeset [4654] by melissa
* Added remainder of Detector/Objective/LightSource -> Image links. * …
08:08 Changeset [4653] by melissa
Fixed openBytes Javadoc comment.

11/24/08:

20:28 Ticket #330 (Cannot read OME-TIFF files saved from Image5D window) closed by melissa
fixed: Nominally fixed in r4652. The problem was that when exporting from an …
20:18 Ticket #329 (Exception when saving from Image5D window) closed by melissa
fixed: (In [4652]) Workaround for known bug in exporting from an Image5D window. …
20:18 Changeset [4652] by melissa
Workaround for known bug in exporting from an Image5D window. Closes …
13:40 Changeset [4651] by melissa
Connect reference entities (DetectorSettings, LightSourceSettings) to an …
12:08 Changeset [4650] by melissa
Added utility methods for finding a value in an unsorted int array.
12:06 Changeset [4649] by melissa
Use getSeriesCount() instead of checking the length of the CoreMetadata …
11:54 Changeset [4648] by melissa
Call MetadataTools.populatePixels before calling any other MetadataStore …
09:57 Changeset [4647] by melissa
Display a more informative message if NetCDF library is not found.
08:22 Changeset [4646] by melissa
Don't use LSM's "DetectionChannel" model to populate LogicalChannel data.

11/21/08:

13:23 Changeset [4645] by curtis
Style.
10:50 Changeset [4644] by melissa
Fixed timestamp offset and a couple of bugs in Objective parsing.

11/20/08:

23:31 Changeset [4643] by melissa
More thorough parsing of Objective data.
20:40 Changeset [4642] by melissa
Added LightSourceSettings.Wavelength, DetectorSettings.Binning, and …
16:46 Changeset [4641] by curtis
Improve memory usage for LM.
14:55 Changeset [4640] by curtis
Fix bugs in LM curve fitting. Works well now (but needs more RAM than GA).

11/19/08:

18:07 Changeset [4639] by ghall
fix mistake in LMCurveFitter
13:05 Ticket #330 (Cannot read OME-TIFF files saved from Image5D window) created by melissa
To reproduce: 0. "File>Open Samples>Fluorescent Cells" in ImageJ 1. …
12:57 Ticket #329 (Exception when saving from Image5D window) created by melissa
Attempting to save some Image5D stacks using the Bio-Formats Exporter …
11:37 Changeset [4638] by melissa
Updated DetectorSettings entities and added ObjectiveSettings entities.
10:58 Changeset [4637] by curtis
More verbose variable names for cached nodes, to avoid name clashes.

11/17/08:

15:31 Changeset [4636] by gbonamy
Added a compression type initialization. Alternatively, check if …
14:08 Changeset [4635] by gbonamy
Added to facilitate import in Eclipse. Classpath needs to be updated to …
14:07 Changeset [4634] by gbonamy
Added to facilitate import under Eclipse
14:01 Changeset [4633] by gbonamy
Updated classpath to refer to JAI_ImageIO developed at LOCI and necessary …
13:59 Changeset [4632] by gbonamy
Added support for JPEG and JPEG2000 compression in Tiff files such as …
13:59 Changeset [4631] by melissa
ICS files produced by Huygens should always be interpreted as unsigned.
13:58 Changeset [4630] by gbonamy
Added Support for JPEG and JPEG2000 compression Fixed bug with zlib …
13:52 Changeset [4629] by gbonamy
Added support for JPEG and JPEG2000
13:35 Changeset [4628] by gbonamy
Fixed bug causing compress to stay in an infinite loop
13:35 Changeset [4627] by gbonamy
Added default values for compression options
13:34 Changeset [4626] by gbonamy
Added error catching for improperly registered JAI_ImageIO. Added default …
13:29 Changeset [4625] by gbonamy
Some of selected resources were not committed.
12:43 Ticket #284 (ZVI reader ignores xy positions beyond the first) closed by melissa
fixed: (In [4624]) * A few additions to ZVI metadata mapping. * Fixed tiled image …
12:42 Changeset [4624] by melissa
* A few additions to ZVI metadata mapping. * Fixed tiled image bug. …

11/14/08:

20:15 Changeset [4623] by curtis
Whitespace.
14:51 Changeset [4622] by melissa
Added comment explaining why the JPEG2000Codec doesn't use …
14:41 Changeset [4621] by melissa
Fixed Z and T size calculation for when isMetadataCollected() returns …
11:40 Changeset [4620] by melissa
Fixed bug with 16-bit indexed color DICOM images.
10:03 Changeset [4619] by melissa
Deltavision stores the exposure time in milliseconds, not seconds.

11/13/08:

15:59 Changeset [4618] by curtis
Remove unnecessary JAR references.
15:21 Changeset [4617] by curtis
Remove test targets from root build file (use targets in …
15:18 Changeset [4616] by curtis
Add default value for testng.memory property.
14:40 Changeset [4615] by melissa
Fixed sample unpacking bug.
14:37 Changeset [4614] by melissa
A few more improvements to Deltavision metadata support.
12:40 Changeset [4613] by melissa
Improved metadata support for BioRad PIC datasets.
11:16 Changeset [4612] by curtis
* Add exec target to each component. * Miscellaneous tweaks to build …

11/12/08:

11:13 Changeset [4611] by melissa
Added libraries referenced through reflection to test suite's classpath.
08:10 Changeset [4610] by melissa
Ignore date strings with unknown formatting, instead of throwing a NPE.
00:17 Changeset [4609] by curtis
* Update Eclipse projects to match the latest codebase. * Add Eclipse …

11/11/08:

22:27 Changeset [4608] by curtis
Reorganize data structures to be more component-centric.
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