Timeline


and

01/30/09:

17:33 Changeset [4767] by curtis
Update to latest Jace snapshot; hopefully fix class version issue.
16:47 Changeset [4766] by curtis
Move Bio-Formats includes into separate header file.
14:42 Changeset [4765] by melissa
Lots of improvements to Metamorph metadata support (see #339).
13:18 Changeset [4764] by melissa
Moved docs out of src/loci/formats.
13:13 Changeset [4763] by curtis
Tweak documentation.
08:06 Changeset [4762] by melissa
Populate Pixels.ID before Image.DefaultPixels.

01/29/09:

18:53 Changeset [4761] by curtis
Progress on bfjace. Working on Linux!
16:35 Changeset [4760] by curtis
Progress on Bio-Formats Jace C++ wrapper.
10:46 Changeset [4759] by melissa
Do not adjust pixel values for signed images when a BufferedImage is …
08:12 Ticket #350 (Add support for IPLab-Mac file format) created by melissa
We should add support for  iVision's

01/27/09:

12:45 Changeset [4758] by melissa
Fixed NPE if LogicalChannel.SamplesPerPixel is not populated.

01/26/09:

18:51 Ticket #338 (Metadata completeness - Nikon ND2) closed by melissa
fixed: Fixed in r4757.
18:50 Ticket #345 (Investigate ND2 timestamp bug) closed by melissa
fixed: Fixed in r4757.
18:48 Changeset [4757] by melissa
Better metadata support for ND2, including correct timestamps.
12:48 Changeset [4756] by melissa
Fixed some MetadataStore population bugs.

01/23/09:

10:57 Changeset [4755] by melissa
Catch NumberFormatException when parsing Objective data.

01/20/09:

17:27 Changeset [4754] by melissa
Better Objective population.
16:29 Changeset [4753] by melissa
Fixed how rows per strip/strip byte counts mismatch is handled.
15:39 Changeset [4752] by melissa
Fixed Objective IDs.
13:07 Changeset [4751] by melissa
Fixed ArrayIndexOutOfBoundsException.

01/19/09:

16:08 Changeset [4750] by melissa
Fixed some OME-XML validation errors.
12:57 Changeset [4749] by melissa
Fixed TiffData population and multi-series OME-TIFF import bug.

01/16/09:

20:09 Ticket #349 (Fix known OME-XML validation errors) created by melissa
Known validation issues include: 1. Detector elements require a Type …
16:05 Changeset [4748] by melissa
Fixed some OME-XML validation issues - Image.DefaultPixels is now …
16:04 Ticket #348 (TiffTools should return individual image tiles) created by melissa
We should have public methods in TiffTools that return a single image tile …
15:42 Changeset [4747] by melissa
Updated metadata documentation.

01/15/09:

17:43 Ticket #346 (ND2Reader reports incorrect dimensions) closed by melissa
fixed: (In [4746]) Fixed dimension calculation bugs; closes #346.
17:43 Changeset [4746] by melissa
Fixed dimension calculation bugs; closes #346.

01/14/09:

16:48 Changeset [4745] by curtis
Some tweaks for Steve: * Output probe details to the log, but only on …
13:10 Changeset [4744] by melissa
Fixed NPE when assigning a custom color to single channel data.
12:44 Changeset [4743] by melissa
Fixed default stack order for the Data Browser.

01/13/09:

16:25 Ticket #347 (Better handling of OME-TIFFs without .ome.tiff extension) created by melissa
We always want to parse OME-XML stored in a TIFF file, even if the file …
15:52 Changeset [4742] by melissa
Adjust the number of rows per strip if the original value is greater than …
14:18 Changeset [4741] by curtis
Tweak error message.
12:35 Changeset [4740] by melissa
Fixed plane index bug.
09:36 Changeset [4739] by melissa
Improved metadata population for Leica LEI files; see #340.

01/12/09:

17:54 Changeset [4738] by curtis
Add -valid flag for xmlindent to preserve CDATA whitespace.
17:16 Changeset [4737] by curtis
Tweak some out-of-date/misleading documentation.
13:40 Ticket #346 (ND2Reader reports incorrect dimensions) created by melissa
ND2Reader reports the dimensions for nd2/jonas/multicolorTest.nd2 as Z=1, …
12:50 Ticket #345 (Investigate ND2 timestamp bug) created by melissa
nd2/jonas/multicolorTest.nd2 is a multi-channel timelapse dataset for …

01/07/09:

14:18 Changeset [4736] by melissa
FluoviewReader now expresses multifield data as multiple series; see #332.
11:39 Ticket #344 (More robust support for 1, 2 and 4 bit images) created by melissa
1, 2 and 4 bit images are currently supported, but not in the most …
08:19 Changeset [4735] by melissa
* Instead of rearranging channels in a LIF file to be in RGB order, apply …

01/06/09:

19:04 Changeset [4734] by curtis
Fix dependencies for editor, notes and ijview command line tools.
16:59 Changeset [4733] by curtis
More robust parsing of command line flags.
14:07 Changeset [4732] by melissa
Moved EditTiffG to loci.formats.tools and added an option to tiffcomment …
13:58 Ticket #343 (Fix OME-XML population bugs in FV1000 reader) closed by melissa
fixed: Fixed wavelengths in r4731. The Laser Wavelength value was correct, but …
13:15 Changeset [4731] by melissa
Minor metadata updates.
10:50 Ticket #337 (Consider expanding "Colorize Channels" option) closed by melissa
fixed: (In [4730]) Added option to specify which colors are used when colorizing; …
10:50 Changeset [4730] by melissa
Added option to specify which colors are used when colorizing; closes …

01/05/09:

14:13 Changeset [4729] by melissa
Several additions to the MetadataStore API, including the new ROI model …

01/02/09:

10:38 Changeset [4728] by melissa
Added majority of upgrade checking functionality (see #327). Does not yet …

12/31/08:

19:21 Ticket #343 (Fix OME-XML population bugs in FV1000 reader) created by melissa
The following fields are being populated incorrectly: * LogicalChannel …
18:16 Ticket #342 (Add support for reading/writing multi-page EPS files) created by melissa
Bio-Formats currently cannot read or write multi-page EPS files. Since …
18:11 Ticket #341 (Add unit tests for writers) created by melissa
We have lots of TestNG tests for the readers, but none that exercise the …
15:19 Ticket #334 (Parse instrument metadata from MicroManager files) closed by melissa
fixed: (In [4727]) Improved OME-XML population for MicroManager; closes #334.
15:18 Changeset [4727] by melissa
Improved OME-XML population for MicroManager; closes #334.
13:50 Changeset [4726] by melissa
Parse the XML comment from TIFF files that are part of a Metamorph .nd …
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