Timeline


and

12/03/09:

13:35 Ticket #440 (Add option to disable file grouping) closed by melissa
fixed: (In [5729]) * Added option to disable file grouping in ImageJ plugin. …
13:35 Changeset [5729] by melissa
* Added option to disable file grouping in ImageJ plugin. Closes #440. * …
10:54 Changeset [5728] by melissa
4.1.1 release of LOCI Tools
09:24 Changeset [5727] by melissa
Updated documentation and what's new for today's release.
03:03 Changeset [5726] by curtis
Some tweaks to the Bio-Formats ITK plugin.

12/02/09:

11:15 Changeset [5725] by curtis
Generalize 64-bit JVM detection for QTJava (also a problem with Win64).

12/01/09:

10:34 Changeset [5724] by curtis
Initial Ant build file for bf-itk.
10:14 Changeset [5723] by curtis
Avoid invalid memory access error on some systems.

11/26/09:

08:59 Changeset [5722] by curtis
Attach metadata store for more involved parallel metadata parsing.
08:56 Changeset [5721] by curtis
Test class for reading from many files in parallel.

11/25/09:

16:12 Changeset [5720] by melissa
* Added a bunch of status messages to FlexReader. * Tweaked …
14:01 Ticket #442 (Feedback 2117: color on change on re-import) closed by melissa
invalid: This is not a bug in Bio-Formats, but rather a problem with OMERO's …
06:26 Ticket #442 (Feedback 2117: color on change on re-import) created by omero-qa
 http://qa.openmicroscopy.org.uk/qa/feedback/2117/
05:13 Ticket #441 (Feedback 2110 : File handle error on MIAS plate) created by omero-qa
 http://qa.openmicroscopy.org.uk/qa/feedback/2110/

11/24/09:

14:02 Ticket #427 (Add support for Imacon (.fff) files) closed by melissa
fixed: (In [5719]) Added preliminary support for Imacon 3F data. Closes #427.
14:02 Changeset [5719] by melissa
Added preliminary support for Imacon 3F data. Closes #427.

11/23/09:

15:49 Changeset [5718] by curtis
Fixes for compiling Bio-Formats ITK plugin on Windows.
15:06 Changeset [5717] by melissa
Merged r5714 into 4.1 branch.
14:50 Changeset [5716] by melissa
* Updated metadata support documentation. * Updated branch version number …
14:29 Changeset [5715] by melissa
Added 'domainlist' command for printing a list of supported domains.
13:10 Changeset [5714] by curtis
Update EditImageName example to use IMetadata interface.
12:46 Ticket #440 (Add option to disable file grouping) created by melissa
The IFormatReader API allows grouping to be disabled for multi-file …
07:47 Changeset [5713] by melissa
Fixed AIOOB.

11/22/09:

11:56 Changeset [5712] by melissa
* Merged r5706, r5636, and r5654 into 4.1 branch. * Fixed SizeC mismatch …
11:27 Changeset [5711] by melissa
Bug fixes.

11/20/09:

09:26 Changeset [5710] by curtis
Fix bug with ZCT mapping. Without this fix, Bio-Formats has a ZCT mismatch …
08:07 Ticket #439 (Add support for HDF files produced by Huygens) created by melissa
See data and notes in data/svi-hdf/samples/.

11/19/09:

16:51 Ticket #438 (Allow readers to report whether or not companion files can be expected) created by melissa
i.e. add something like 'public static boolean hasCompanionFiles()' to …
16:13 Ticket #434 (Feedback 1528: OOM in ZVI) closed by melissa
fixed: (In [5709]) * Various bug fixes. * Reduced amount of memory required by …
16:13 Changeset [5709] by melissa
* Various bug fixes. * Reduced amount of memory required by ZeissZVIReader …
16:02 Changeset [5708] by curtis
Miscellaneous bugfixes (especially with the preview pane).
16:00 Changeset [5707] by curtis
Save VisBio output to a log file.

11/18/09:

12:44 Changeset [5706] by melissa
Prevent NPE if delegate reader was not initialized.
08:10 Changeset [5705] by melissa
Allow Deltavision files to have non-standard extensions.

11/17/09:

19:52 Ticket #437 (Feedback 1692: incell reader OOMs on text parse) closed by melissa
fixed: (In [5704]) Removed InCell ROI parsing; closes #437.
19:52 Changeset [5704] by melissa
Removed InCell ROI parsing; closes #437.
17:54 Ticket #437 (Feedback 1692: incell reader OOMs on text parse) created by omero-qa
 http://qa.openmicroscopy.org.uk/qa/feedback/1692/
15:13 Changeset [5703] by melissa
Fixed LUT parsing for multi-file BioRad datasets.
14:28 Changeset [5702] by curtis
Better logging for C++ proxy generation.
13:50 Changeset [5701] by curtis
Fix problem with -preload: do not create a DIS if the RAF was directly …
13:25 Changeset [5700] by curtis
Add debug messages to Location mapping methods.
13:24 Changeset [5699] by curtis
Better feedback when caching data with "-preload" flag.
11:54 Ticket #436 (Improve ND2 initialization time) created by melissa
Many Nikon ND2 files (particularly the JPEG-2000 variant) take a long time …

11/16/09:

15:34 Changeset [5698] by curtis
Eliminate CMake policy warnings.
15:24 Changeset [5697] by curtis
Workaround for AutoProxy's extreme logging verbosity.
13:46 Changeset [5696] by melissa
Always ignore the file pattern if fileGroupOption(id) == MUST_GROUP.
12:55 Changeset [5695] by melissa
Fixed AIOOB.
12:20 Ticket #435 (Feedback 1526: String index error) closed by melissa
fixed: (In [5694]) Prevent StringIndexOutOfBoundsException when parsing Objective …
12:20 Changeset [5694] by melissa
Prevent StringIndexOutOfBoundsException when parsing Objective data. …
11:46 Changeset [5693] by melissa
* Throw a more informative exception if an invalid file pattern is passed …
11:35 Changeset [5692] by curtis
Some fixes for compiling Bio-Formats C++ bindings on Windows: * Set …
10:15 Changeset [5691] by melissa
One more Filter linkage fix.
09:00 Changeset [5690] by melissa
Populate Shape.StrokeColor.

11/15/09:

17:30 Changeset [5689] by callan
Merging r5688 from Trunk
17:29 Changeset [5688] by callan
Handling cases where the plane index is not present
15:46 Changeset [5687] by melissa
Fixed linkages for simultaneous scan files.

11/14/09:

13:37 Changeset [5686] by melissa
Tiling fixes.

11/13/09:

12:03 Changeset [5685] by melissa
MIAS masks are now packed bit masks.
09:54 Ticket #435 (Feedback 1526: String index error) created by omero-qa
 http://qa.openmicroscopy.org.uk/qa/feedback/1526/
09:44 Ticket #434 (Feedback 1528: OOM in ZVI) created by omero-qa
 http://qa.openmicroscopy.org.uk/qa/feedback/1528/

11/12/09:

04:13 Changeset [5684] by callan
Merging r5628 and r5651 from Trunk

11/11/09:

10:57 Changeset [5683] by melissa
Reduced initialization time for Flex datasets.
07:58 Ticket #385 (Generated OME-XML has an invalid DisplayOptions element) closed by melissa
fixed: DisplayOptions is not populated as of r5535.

11/10/09:

16:27 Changeset [5682] by curtis
Relicense Bio-Formats C++ bindings and Bio-Formats ITK plugin under a …
13:50 Changeset [5681] by melissa
Ensure that the XML string starts with '<'.
12:19 Changeset [5680] by melissa
Prevent StringIndexOutOfBoundsException when parsing key/value pairs.

11/09/09:

15:10 Changeset [5679] by melissa
Tweaked tiled image handling.
09:06 Changeset [5678] by melissa
Place timestamps in original metadata hashtable and populate …
08:13 Changeset [5677] by melissa
Prevent measurement files from being duplicated in the used file list.

11/07/09:

11:35 Changeset [5676] by melissa
Tweaked pixel offset calculation.

11/06/09:

08:25 Changeset [5675] by melissa
Check that TIFF comment has not been truncated.

11/05/09:

16:24 Changeset [5674] by curtis
Tweak error messages.
15:13 Changeset [5673] by curtis
Preallocate byte buffer.
14:22 Changeset [5672] by curtis
Vastly improved performance for Bio-Formats ITK plugin.

11/04/09:

16:40 Changeset [5671] by curtis
Progress on Bio-Formats ITK plugin. But still broken.
16:39 Changeset [5670] by curtis
Add convenience method for getting stack trace string.
12:44 Changeset [5669] by curtis
Add note to look into using Java enums later.
12:42 Changeset [5668] by curtis
Add IFD.getIFDTextValue convenience method; clean up a few IFD calls.
12:10 Changeset [5667] by curtis
More LOCI logos.
11:18 Changeset [5666] by curtis
Fix OSGi version numbers to match latest 4.1.0 release.
10:36 Changeset [5665] by melissa
Prevent AIOOB if the tile index is greater than the total number of tiles.
09:52 Ticket #430 (Feedback 1018: ArrayIndexOutOfBounds in ZeissLSM) closed by melissa
fixed: (In [5664]) Several minor bugfixes. Closes #430.
09:52 Changeset [5664] by melissa
Several minor bugfixes. Closes #430.

11/03/09:

15:36 Changeset [5663] by curtis
Add exception handling for Bio-Formats calls.
12:38 Changeset [5662] by curtis
Minor tweak.
10:02 Changeset [5661] by melissa
Override fileGroupOption(String) and populate WellSample.ImageRef.
09:48 Changeset [5660] by melissa
Ensure that the series is correct before constructing a virtual stack.
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