Timeline


and

01/26/10:

13:57 Changeset [5834] by curtis
Move Bio-Formats-specific utilities into Bio-Formats component utility …
11:34 Changeset [5833] by curtis
Add a check to ImageReader for invalid IDs. This check results in …
09:50 Changeset [5832] by melissa
Fixed implementation of writeByte(int).
09:30 Changeset [5831] by callan
* Write tests for all the data types * Fixed problems with double …

01/25/10:

14:14 Changeset [5830] by melissa
* Added LEO EM reader. See #412. * Updated FITS reader to allow the 'fts' …
12:57 Changeset [5829] by melissa
Added Targa reader. See #412.

01/22/10:

14:35 Changeset [5828] by melissa
Added method to retrieve the format name for a particular file.
13:41 Changeset [5827] by melissa
Fixed a few bugs in 16 and 24 bit float support, courtesy of Chris Lesiak.
12:18 Changeset [5826] by melissa
Fixed float/double parsing for ND2 files that have a decimal delimiter not …
11:53 Ticket #467 (Support for Group 3 Fax TIFF compression) created by curtis
Bio-Formats does not currently support CCITT T.4 bi-level encoding (Group …
11:51 Changeset [5825] by callan
* Tests for reads with byte arrays on buffer alignment * Fixed NIO file …
10:10 Changeset [5824] by melissa
* Changed URLHandle to be read-only. * Added URLHandleTest to testng.xml.
09:03 Changeset [5823] by callan
* Added byte array and byte sub array tests from Brian * Fixed issue with …
08:20 Changeset [5822] by callan
Switched to usage of validateLength().
08:16 Changeset [5821] by callan
* Fixing most NIOFileHandle write methods * Added test cases for writing …

01/21/10:

16:18 Changeset [5820] by melissa
When parsing an option, look for the option's label if the key is missing.
13:27 Changeset [5819] by melissa
* Fixed bug in NIOFileHandle.read(byte[], int, int) * Updated …
12:06 Changeset [5818] by melissa
Corrected documentation and removed trailing whitespace.
09:29 Changeset [5817] by melissa
Added root 'test' target and modified component 'test' targets to succeed …

01/20/10:

15:51 Changeset [5816] by melissa
Added Ant 'test' target for each component. This will compile everything …
14:01 Changeset [5815] by melissa
* Fixed URLHandle to work with non-HTTP URLs. * Fixed URLHandle tests. …
13:14 Changeset [5814] by melissa
Fixed a handful of bugs exposed by the I/O tests. URLHandle tests still …
12:17 Changeset [5813] by callan
Re-architecting TestNG usage so that we can run a "suite" against any …
11:29 Changeset [5812] by melissa
Tweaked metadata hashtable population.
10:58 Changeset [5811] by melissa
Parse stage position and pinhole size metadata.
10:09 Changeset [5810] by callan
Fixing Eclipse classpath for TestNG JAR
07:19 Changeset [5809] by callan
* Proper end of file exception semantics * Buffers are no longer page …

01/19/10:

14:35 Ticket #382 (Generated OME-TIFF files have invalid UUID elements) closed by melissa
fixed: (In [5808]) Fixed UUID population. Closes #382.
14:35 Changeset [5808] by melissa
Fixed UUID population. Closes #382.
14:25 Ticket #420 (Feedback 145: exported tiffs cannot be opened with) closed by melissa
fixed: Closing this ticket, as we've been able to open exported TIFFs since r5516
14:19 Changeset [5807] by melissa
Removed unused imports.
14:10 Changeset [5806] by melissa
* Added tests for loci.common.BZip2Handle and loci.common.URLHandle. * …
07:34 Changeset [5805] by melissa
Removed check for zero length, as it causes too many problems.
05:57 Changeset [5804] by callan
Fixed typo.
05:51 Changeset [5803] by callan
Removing some unused imports.
05:21 Changeset [5802] by callan
* Added test case for buffer alignment * Fixed buffer rewinding bug as …
04:44 Changeset [5801] by callan
Configurable buffer sizes for added utility and testing.
04:25 Changeset [5800] by callan
* Normalized test class naming * Test cases for float and double

01/18/10:

16:27 Changeset [5799] by melissa
Preserve pixel dimensions.

01/15/10:

14:26 Changeset [5798] by melissa
* Tweaked pixel type enumeration to allow the "double" type. * Fixed a bug …
12:48 Changeset [5797] by melissa
Added priority attributes to two rules, to prevent "Ambiguous rule match" …
11:49 Changeset [5796] by melissa
* Added test classes for loci.common.ByteArrayHandle and …
10:20 Changeset [5795] by melissa
* Added test class for loci.common.GZipHandle. * Fixed a couple of bugs …

01/14/10:

14:58 Changeset [5794] by melissa
* Implemented getOrder() and setOrder(ByteOrder) for StreamHandle and …
14:06 Changeset [5793] by melissa
* Tweaked comments/trailing whitespace in NIOFileHandle and …
11:59 Changeset [5792] by callan
Test case for endianness
11:41 Changeset [5791] by melissa
Upgraded to TestNG 5.11 JDK 1.5, so that new I/O tests can be compiled.
11:39 Changeset [5790] by callan
Added endianness to the I/O API.
10:34 Changeset [5789] by callan
* Normalized test case method names * Added positive and negative values …

01/13/10:

12:52 Changeset [5788] by melissa
Parse Z positions from UIC1 tag.
12:30 Changeset [5787] by callan
* Test cases for "char" from Brian * Renamed uint8 test cases to fall in …
11:23 Ticket #458 (Bio-Formats Exporter drops metadata for non-imported images) closed by melissa
fixed: (In [5786]) Ensure that calibration information is preserved, regardless …
11:23 Changeset [5786] by melissa
Ensure that calibration information is preserved, regardless of how the …
10:53 Ticket #466 (Review TIFF parsing logic) created by melissa
Need to ensure that everything in loci.formats.tiff: * Is thread-safe. …
10:52 Ticket #465 (Add tests for ImageJ plugin) created by melissa
Add tests to ensure that cleanup work (especially ticket #464) does not …
10:50 Ticket #464 (Review runtime dependencies) created by melissa
For every dependency (including those in the 'forks' component), we want …
10:43 Ticket #463 (Utility class review) created by melissa
Review the following classes in loci.common: * Ini* * XMLTools * …
10:38 Ticket #462 (Review logging infrastructure) created by melissa
Primary classes to review are loci.common.Log and loci.common.LogTools, …
10:36 Ticket #461 (Review build system for testing components in isolation) created by melissa
To make cleanup work easier BioFormatsCleanup?, it would be nice to …
10:31 Ticket #460 (Add tests for I/O classes) created by melissa
Add unit tests for each of the following classes in loci.common, and any …
10:27 Ticket #459 (I/O class review) created by melissa
Review the following classes/interfaces in loci.common: * BZip2Handle * …
06:57 Changeset [5785] by callan
NIO based IRandomAccess and InputStream implementations * TestNG test …
00:36 Changeset [5784] by curtis
Support uncompressed data with Compression=0 as well.

01/12/10:

16:04 Changeset [5783] by mike
Updated bf-cpp conflicts file
13:06 Changeset [5782] by melissa
* Moved CompressedRandomAccess to StreamHandle. * Moved a bunch of …
10:51 Changeset [5781] by melissa
Removed 'int read()' and 'void setLength(long)' from IRandomAccess.
10:24 Changeset [5780] by melissa
Updated documentation for IRandomAccess.
08:56 Changeset [5779] by melissa
* Added alternate magic number for JPEG-2000 compression. * Fixed how …

01/11/10:

15:10 Changeset [5778] by melissa
Removed file handle caching logic from RandomAccessInputStream, and …
14:25 Changeset [5777] by curtis
Fix data typing error with doublesToBytes.
14:01 Ticket #458 (Bio-Formats Exporter drops metadata for non-imported images) created by curtis
The Bio-Formats Exporter does not preserve metadata when saving unless the …
13:43 Ticket #317 (Add file format extension filter to Bio-Formats Exporter) closed by curtis
fixed: This issue was addressed in r4833.

01/07/10:

13:39 Changeset [5776] by curtis
Add writer for saving images as Java source code. Unfortunately, images …
12:47 Changeset [5775] by melissa
If a lookup table is only present in the first IFD, apply it to all …
11:36 Changeset [5774] by melissa
Created branch for Bio-Formats cleanup work (thread-safeness, I/O review, …
11:29 Changeset [5773] by melissa
Ported Flex/TIFF efficiency changes to 4.1 branch.

01/06/10:

09:51 Changeset [5772] by melissa
When possible, only parse the first IFD from the first file.

01/05/10:

12:28 Changeset [5771] by melissa
Ported r5770 to 4.1 branch.

01/04/10:

14:42 Changeset [5770] by melissa
Tweaked dimension calculation for multi-channel ImageJ TIFFs.
14:32 Ticket #456 (Add support for half-float pixel data in TIFF files) closed by melissa
fixed: (In [5769]) Added support for half float and half double pixels. Closes …
14:32 Changeset [5769] by melissa
Added support for half float and half double pixels. Closes #456.
14:21 Changeset [5768] by curtis
Fix some comments.
11:46 Changeset [5767] by curtis
Improvements to bfopen.m suggested by Cris Luengo.
10:46 Changeset [5766] by melissa
Tweaked TiffIFDEntry retrieval.

12/31/09:

11:08 Changeset [5765] by melissa
One more isThisType tweak.
09:54 Changeset [5764] by melissa
Tweaked isThisType so that .wav files are not detected as AVIs.

12/30/09:

10:58 Changeset [5763] by melissa
Set the tile length to equal the image length if it was originally less …
10:17 Ticket #431 (Feedback 1012: ArrayIndexOutOfBound in Slidebook) closed by melissa
fixed: For those who don't have access to the QA, here is the error: …
10:17 Changeset [5762] by melissa
Tweaked SizeT calculation to prevent an AIOOB.
09:21 Changeset [5761] by melissa
* Better handling of large images in ChannelSeparator. * Minor cleanup in …

12/28/09:

12:34 Changeset [5760] by melissa
A few more tweaks to speed up Flex parsing.
09:17 Ticket #457 (Add support for Bio-Rad Gel format) created by melissa
See sample files in data/biorad-gel/sylvain. These files can be opened by …
09:03 Ticket #456 (Add support for half-float pixel data in TIFF files) created by melissa
Storage of half-float data is defined here: …
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