Timeline


and

03/18/10:

19:10 Changeset [6044] by melissa
Added '.map' as a valid MRC extension. See OMERO #1934.
16:47 Changeset [6043] by melissa
* Better plate name detection. * Well labelling fixes from Bram Gerritsen.
15:01 Changeset [6042] by melissa
Attempt to retrieve dimension information from plane names.
13:18 Changeset [6041] by curtis
Some Javadoc cleanup and additions.
07:45 Changeset [6040] by curtis
Readd some static MetadataTools methods, deprecated, to ease migration of …
04:59 Changeset [6039] by curtis
Add scroll bars as needed to main Bio-Formats Importer dialog.

03/17/10:

16:46 Changeset [6038] by melissa
Fixed compile errors in Bio-Formats utils.
16:06 Changeset [6037] by melissa
Add key/value pairs that map normalized channel indices to 'real' channel …
14:09 Changeset [6036] by melissa
Adjusted physical size Z to account for the fact that it is stored in …
12:11 Changeset [6035] by curtis
Reset default Visual Studio compiler to VS9 2008.
10:43 Changeset [6034] by melissa
* Fixed 16-bit lookup table handling in ImageJ. * Prevent IFD.printIFD …
07:21 Changeset [6033] by curtis
Parse spacing from ImageJ-style TIFF metadata.
05:34 Changeset [6032] by curtis
More robust handling of SVN metadata in Ant.

03/16/10:

16:01 Changeset [6031] by melissa
* Fixed well labeling bug, courtesy of Bram Gerritsen. * Fixed NPE when …
15:26 Changeset [6030] by melissa
Fixed a couple of bugs with reading > 2 GB ICS datasets.
13:29 Changeset [6029] by melissa
* Prevent an NPE in …
04:24 Changeset [6028] by curtis
Fix LOCI common utils compilation.

03/15/10:

15:01 Changeset [6027] by melissa
Fixed docs classpath and dependencies for bio-formats targets.
14:27 Changeset [6026] by melissa
Merging cleanup branch back into trunk.
14:25 Ticket #466 (Review TIFF parsing logic) closed by melissa
fixed

03/12/10:

15:55 Changeset [6025] by curtis
Minor tweaks.
13:21 Changeset [6024] by curtis
Fix bug where ImageReader doesn't release all file locks.

03/11/10:

16:52 Changeset [6023] by melissa
Added a few more TiffSaver tests, and fixed bugs that prevented them from …
15:44 Changeset [6022] by curtis
Progress on importer refactoring. Still much left to do.
11:45 Changeset [6021] by melissa
* Readded lookup table support to TiffWriter. * Fixed a couple of bugs in …
10:34 Changeset [6020] by melissa
Improved TiffSaver functionality and removed …

03/10/10:

14:56 Changeset [6019] by curtis
Readd missing build.xml, and fix some javadoc warnings.
14:11 Changeset [6018] by melissa
TiffParser.getFirstOffset() no longer assumes that …
13:12 Changeset [6017] by curtis
Fix docs target.
12:56 Changeset [6016] by curtis
Move a bunch of Ant junk into its own folder.
09:34 Changeset [6015] by melissa
Added Burleigh reader. See #412.
06:47 Changeset [6014] by callan
#466 Generalized unit tests for parsed TIFF types (grayscale and RGB …

03/09/10:

18:47 Changeset [6013] by melissa
Added Quesant reader. See #412.
17:31 Changeset [6012] by melissa
Added basic TIFF pixels read/write tests. See #466.
16:22 Changeset [6011] by curtis
Progress on cleanup of original metadata table handling.
16:21 Changeset [6010] by curtis
Add a method for merging metadata from one table to another.
16:12 SlideFormats created by melissa
16:09 Ticket #480 (Add support for Hamamatsu VMS data) created by melissa
See data in data/hamamatsu-vms/.
16:01 Ticket #479 (Add support for Trestle slide data) created by melissa
See data in data/trestle/.
15:52 Ticket #478 (Add support for Hamamatsu NanoZoomer data) created by melissa
This is a slide format with the .ndpi extension; see data in …
15:48 Ticket #477 (Add support for Mirax data) created by melissa
This is a slide format; see the  Mirax website
15:30 Changeset [6009] by melissa
Fixed bug that caused original metadata to be needlessly duplicated.
13:48 Changeset [6008] by curtis
Fix macro arguments.
13:15 Changeset [6007] by curtis
Clean up some unchecked operations.
12:05 Changeset [6006] by callan
#466 Complete coverage of the required IFD entries for a grayscale image.
10:03 Ticket #476 (AVI files saved using one writer per plane are broken) created by melissa
AVI files saved using …
07:56 Changeset [6005] by callan
#466 Moved common enumeration classes to loci.common.enumeration and added …
06:49 Changeset [6004] by callan
#466 Significantly more thorough grayscale TIFF parser tests. Almost …

03/08/10:

17:13 Changeset [6003] by callan
#466 Initial TIFF saver and parser smoke tests
15:14 Changeset [6002] by curtis
Fix bugs in ijview command line tool.
14:43 Changeset [6001] by melissa
Added UBM reader. See #412.
13:40 Changeset [6000] by melissa
Adjusted XMLTools.parseXML implementations so that a new byte array is not …
12:01 Changeset [5999] by melissa
Moved LUT application to separate method.
11:17 Changeset [5998] by melissa
Added support for comb scanned mosaics.
10:24 Changeset [5997] by curtis
Fix embarrassing bug.
08:16 Changeset [5996] by melissa
Tweaked FEI reader to support Philips .img files. See #412.

03/05/10:

17:32 Changeset [5995] by melissa
Fixed potential AIOOB.
16:04 Changeset [5994] by melissa
Adjust strip byte counts if they do not match up with the number of rows …
16:02 Changeset [5993] by melissa
Added JEOL reader. See #412.

03/04/10:

12:23 Changeset [5992] by melissa
Set lookup tables correctly, if they are present.
12:08 Changeset [5991] by melissa
Prevent an exception if the XML encoding is not specified and adjust the …
10:50 Changeset [5990] by melissa
Updated differencing/undifferencing logic to be more generic. See #466.
10:27 Changeset [5989] by curtis
More cleanup of URLs.

03/03/10:

16:35 Changeset [5988] by melissa
Removed null checking from IFD.getIFD*Value methods, as it was rarely …
16:31 Changeset [5987] by curtis
Update a bunch of URLs. Still more to be done in various packages though.
13:48 Changeset [5986] by melissa
Consolidated value offset/data length writing logic into a single helper …
12:26 Changeset [5985] by melissa
Added TopoMetrix reader. See #412.

03/02/10:

16:18 Changeset [5984] by melissa
Added Seiko reader and cleaned up SM Camera reader a bit. See #412.
15:11 Changeset [5983] by melissa
Added SM Camera reader. See #412.
13:46 Changeset [5982] by melissa
Fixed path to stylesheet, so that it can be found by ImageJ.
13:13 Changeset [5981] by curtis
Minor tweaks.
11:13 Changeset [5980] by melissa
Fixed a few more bugs with reading/writing AVI files. Exported RGB AVIs …

03/01/10:

14:23 Changeset [5979] by melissa
A few more QuickTime fixes.
13:23 Changeset [5978] by melissa
Fixed two more QuickTime padding bugs.
12:28 Ticket #475 (Add support for Intervision MV format) created by melissa
See data in data/intervision/johan/.
12:26 Ticket #474 (Add support for Varian FDF format) created by melissa
See data in data/varian-mri/hannes/.
10:01 Changeset [5977] by melissa
Write actual number of colors used; exported AVIs should now open in …
09:47 Changeset [5976] by melissa
Fixed QuickTime writer to correctly pad images whose widths are not a …
09:20 Changeset [5975] by melissa
Added reader for WA Technology .wat files. See #412.

02/27/10:

14:13 Changeset [5974] by melissa
Fixed how 32-bit AVIs are handled.

02/26/10:

18:55 Changeset [5973] by curtis
Add example for writing 24-bit RGB movies.
17:18 Changeset [5972] by melissa
Added Gatan .dm2 reader and fixed a couple of Gatan .dm3 bugs. See #412.
14:33 Changeset [5971] by melissa
Added missing isThisType(RandomAccessInputStream) implementations to …
14:33 Changeset [5970] by melissa
Consolidated a lot of pixel unpacking logic. See #466.
11:52 Changeset [5969] by callan
#466 Converting PhotoInterp into a Java 1.5+ enum
11:20 Changeset [5968] by callan
#466 Test cases for TiffRational; validates r5967
10:56 Changeset [5967] by callan
#466 TiffRational type safety adjustment
08:17 Changeset [5966] by callan
#466 Cleaned up a couple cases where TreeSet is a useful replacement for …
08:01 Changeset [5965] by callan
Made Nikon codec decompression test a little more thorough.
06:32 Changeset [5964] by callan
#466 Converting IDF types to a Java 1.5+ enum
06:05 Changeset [5963] by callan
Fixed interface / abstract class usage mismatch.
06:02 Changeset [5962] by callan
#466 Made TiffCompression enum instances a little bit more elegant and …
05:35 Changeset [5961] by callan
Fixed a bug where seek() was called on an already closed stream.

02/25/10:

17:28 Changeset [5960] by curtis
Better error message if IFD indices don't line up.
17:14 Changeset [5959] by curtis
Quick fix to a problem with "Merge channels" when not using virtual …
15:07 Changeset [5958] by melissa
* Altered IFD retrieval methods in TiffParser to be a little more …
12:20 Changeset [5957] by callan
#466 Converting TiffCompression into a Java 1.5+ enum
10:13 BioFormatsService edited by callan
(diff)
04:57 BioFormatsService created by callan

02/23/10:

21:23 Changeset [5956] by melissa
Removed some unnecessary TIFF parsing methods and cleaned up how BigTIFF …
15:20 Changeset [5955] by melissa
Fixed typo.
15:05 Changeset [5954] by melissa
Populate WellSample.ImageRef.
14:27 Ticket #464 (Review runtime dependencies) closed by melissa
fixed
14:27 Changeset [5953] by melissa
Updated calls to TiffTools to use TiffParser instead, and removed …
11:48 Changeset [5952] by callan
Test case for lossless JPEG2000 compression.
09:18 Changeset [5951] by melissa
Fixed NPE, courtesy of Jon Armond.
05:16 Changeset [5950] by callan
Cleaning up un-used import
05:04 Changeset [5949] by callan
#464 Some further POI fork tests with an Excel document

02/22/10:

15:16 Changeset [5948] by melissa
Added another MDB service test.
11:55 Changeset [5947] by melissa
Added a few more NetCDF tests.

02/19/10:

15:45 Changeset [5946] by melissa
Added a few more OME-XML tests.
14:35 Changeset [5945] by melissa
Fixed packages for OME I/O tests and removed extra TestNG XML file.
14:17 Changeset [5944] by melissa
* Moved OME I/O tests to ome-io component. * Added dependency check to …
10:17 Changeset [5943] by callan
#464 Added LuraWave service * Stub in stubs component for …
08:39 Changeset [5942] by callan
Stubs component; holds stubs of third party classes
08:22 Changeset [5941] by callan
#464 Minimal test cases for POI, OME reader/writer, OME-XML MDB and NetCDF …
08:17 Changeset [5940] by callan
Fixing imports in loci-plugins component
07:51 Changeset [5939] by callan
#464 Re-organizing the JAIIIOService a bit, adding a test case to cover it
06:06 Changeset [5938] by callan
#464 Various cleanup changes: * Normalized all service packages to …

02/18/10:

13:05 Changeset [5937] by callan
#464 Removing some usage of ReflectedUniverse where OMEReaderWriterService …
12:15 Changeset [5936] by melissa
Prevent a NegativeArraySizeException if the record size information is …
10:45 Changeset [5935] by callan
#464 Implementation of OME reader/writer service (includes test cases)

02/17/10:

15:47 Changeset [5934] by melissa
Prevent NPEs when parsing primitive type values.
14:46 Changeset [5933] by melissa
Set Z/T physical dimensions to 0 if the corresponding axis length is 1.
13:20 Changeset [5932] by melissa
Added reader for Photoshop TIFF files.
11:48 Changeset [5931] by melissa
Switched root test target to use overridden test targets in bio-formats …
11:30 Changeset [5930] by melissa
Each component's 'test' target now depends on 'jar'.
11:23 Changeset [5929] by callan
Fixed missing MDB test case
11:00 Changeset [5928] by callan
Adding missing AbstractService
10:56 Changeset [5927] by callan
Adding dependency check test cases to default test target
10:39 Changeset [5926] by callan
#464 Addition of AbstractService and some more aggressive dependency …
10:38 Changeset [5925] by callan
Updating Eclipse project settings for bio-formats and common components.
10:37 Changeset [5924] by callan
Fixing Eclipse classpath.
08:15 Changeset [5923] by melissa
Tweaked gain parsing to allow for double values.

02/16/10:

14:33 Changeset [5922] by melissa
Override lookup table accessor methods.
14:12 Changeset [5921] by melissa
Added service for reading JPEG-2000 data using JAI Image I/O. See #464.
12:31 Changeset [5920] by melissa
Updated ImageViewer to use OME Notes service.
12:22 Changeset [5919] by melissa
* Added service for MDB Tools. See #464. * Added documentation to …
12:10 Changeset [5918] by callan
#464 NetCDFService implemented with relevant readers adjusted
05:31 Changeset [5917] by callan
Fixing classpath and empty dependency package.
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