Timeline
05/05/10:
- 17:18 Changeset [6242] by
- Specify a pixel type for the importer tests.
- 16:40 Changeset [6241] by
- Updated Bio-Formats utils to use new MetadataStore/MetadataRetrieve.
- 16:10 Changeset [6240] by
- Initial version of some simple tests for Bio-Formats Importer.
- 16:10 Changeset [6239] by
- Minor progress on Bio-Formats Importer refactoring.
- 16:09 Changeset [6238] by
- Add toplevel utility method for obtaining ImagePlus from path string.
- 16:08 Changeset [6237] by
- Temporarily disable bf-ice and ome-notes components in dependency checker.
- 16:07 Changeset [6236] by
- Add a hack to skip file existence check for .fake files.
- 16:07 Changeset [6235] by
- Add ome-xml.jar to Eclipse classpath, hopefully as a temporary workaround.
- 14:28 Changeset [6234] by
- * Fixed compile errors introduced in r6230. * Added transformations from …
- 13:24 Ticket #490 (Add support for PDS files) created by
- See files in data/pds/.
- 11:34 Changeset [6233] by
- Populate original metadata using StructuredAnnotations.
- 10:30 Changeset [6232] by
- OME-XML generation should work now.
05/04/10:
- 20:41 Changeset [6231] by
- Added loci.formats.ome.OMEXMLMetadataImpl, which should have been in …
- 20:26 Changeset [6230] by
- Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily …
- 17:23 Changeset [6229] by
- Minor progress on Bio-Formats plugins refactoring. * Reorganize some …
- 17:03 Changeset [6228] by
- Change certain logger warnings to debug instead, to avoid extraneous …
- 16:58 Changeset [6227] by
- Fix problems with available() and readString(int). Fixes an indirect bug …
- 12:22 Changeset [6226] by
- Re-run of code generation ( ome-xml:r585).
- 05:09 Changeset [6225] by
- Adding code for Metadata Store test cases in Instrument, Plate and ROI.
05/03/10:
- 18:09 Changeset [6224] by
- Better error output for scan-deps.
- 17:43 Changeset [6223] by
- Temporary fix for compile errors.
- 17:27 Changeset [6222] by
- Ported r6221 to 4.1 branch.
- 17:27 Changeset [6221] by
- Fixed Nikon type, compression, and image count detection bugs.
- 17:26 Changeset [6220] by
- Open sliced images as hyperstacks by default.
- 17:25 Changeset [6219] by
- Fix Slicer plugin.
- 13:47 Changeset [6218] by
- * Cache previously opened LSM plane if channels are being split. * …
- 12:10 Changeset [6217] by
- Reduced Zeiss LSM IFD parsing time.
- 12:05 Changeset [6216] by
- Enabling check of abstract-proprietary type counts. (At the moment only …
- 12:04 Changeset [6215] by
- Re-run of code generation ( ome-xml:r584).
- 11:00 Changeset [6214] by
- Updated test cases from Andrew and a couple more passing with some changes …
- 10:32 Changeset [6213] by
- IMetadata getter test cases.
- 09:44 Changeset [6212] by
- Test case updates from Andrew.
- 09:09 Changeset [6211] by
- Initial commit of IMetadata mock. Passes initial Image test cases.
- 09:03 Changeset [6210] by
- Re-run of code generation ( ome-xml:r583).
- 05:34 Changeset [6209] by
- Moved test cases to a mock based foundation.
04/30/10:
- 18:33 Changeset [6208] by
- Minor fix to showinf output.
- 15:09 Ticket #489 (Andor TIFF timestamps are missing or incorrect) created by
- […] See files in data/andor/pariksheet.
- 14:06 Ticket #488 (Add support for OpenEXR files) created by
- See data in data/openexr/ and http://www.openexr.com/.
- 13:58 Changeset [6207] by
- Fixed parsing of ND filter from log file.
- 10:54 Changeset [6206] by
- OME XML metadata implementation. Re-run of code generation ( ome-xml:r582).
04/29/10:
- 12:54 Changeset [6205] by
- Prevent NPE if ROI file is missing.
- 11:59 Changeset [6204] by
- Initial version of OME XML metadata and updated metadata store and …
- 10:57 Changeset [6203] by
- Removed SPA-LEED reader, which hasn't yet been committed.
- 10:41 Changeset [6202] by
- Re-run of code generation ( ome-xml:r579).
- 03:53 Changeset [6201] by
- Reverting changes to Eclipse settings.
- 03:52 Changeset [6200] by
- Removed erroneous classes from the OMERO schema.
04/28/10:
- 10:16 Changeset [6199] by
- Metadata store and retrieve interfaces for examination and testing. Re-run …
04/27/10:
- 14:01 Changeset [6198] by
- Tweaked matching priorities so that reordering works again.
- 13:16 Changeset [6197] by
- * Added Molecular Imaging and JPK readers. See #412. * Minor cleanup in …
- 04:37 Changeset [6196] by
- Move to use primitives for NonNegativeInteger, PositiveInteger and …
- 03:16 Changeset [6195] by
- All tests passing. Re-run of code generation ( ome-xml:r554).
04/26/10:
- 16:03 Changeset [6194] by
- Re-run of code generation ( ome-xml:r552).
- 13:51 Changeset [6193] by
- Added RHK Technologies reader. See #412.
- 12:45 Changeset [6192] by
- Fix classpath problem with Windows batch files.
- 12:11 Changeset [6191] by
- Added SBIG reader and fixed a NIfTI type detection bug. See #412.
04/25/10:
- 13:46 Changeset [6190] by
- * Updated remaining readers to respect MetadataOptions. * Added bounds …
04/24/10:
- 19:25 Changeset [6189] by
- Fix for NullPointerException, courtesy of Lee Kamentsky.
04/23/10:
- 15:46 Changeset [6188] by
- * Updated a few more readers to respect MetadataOptions. * Fixed a couple …
- 14:51 Changeset [6187] by
- Add dist-bftools target for creating bftools.zip.
- 14:04 Changeset [6186] by
- Simple utility for printing out Java system properties.
- 12:41 Changeset [6185] by
- Re-run of code generation ( ome-xml:r544)
- 12:20 Changeset [6184] by
- Re-run of code generation ( ome-xml:r543)
- 11:41 Changeset [6183] by
- Re-run of code generation ( ome-xml:r542)
- 11:38 Changeset [6182] by
- Fix up logging with Bio-Formats command line tools. This removes the hard …
- 11:09 Changeset [6181] by
- Re-run of code generation ( ome-xml:r541)
- 10:47 Changeset [6180] by
- Re-run of code generation ( ome-xml:r540)
- 10:15 Changeset [6179] by
- Re-run of code generation ( ome-xml:r539)
- 07:24 Changeset [6178] by
- Foundation for reference handling support. ( ome-xml:r536) Fixed a few …
- 03:28 Changeset [6177] by
- Fixed some typos.
04/22/10:
- 11:53 Changeset [6176] by
- Added a few more Annotation test.
- 11:40 Changeset [6175] by
- Re-run of code generation ( ome-xml:r527)
- 11:29 Changeset [6174] by
- Re-run of code generation ( ome-xml:r526)
- 11:16 Changeset [6173] by
- Add support for binary file schema. ( ome-xml:r525)
- 10:52 Changeset [6172] by
- Re-run of code generation ( ome-xml:r525)
- 10:36 Changeset [6171] by
- References going OUT. ( ome-xml:r523)
- 10:24 Changeset [6170] by
- Added a few Annotation tests.
- 06:29 Changeset [6169] by
- Re-run of code generation ( ome-xml:r522)
- 06:25 Changeset [6168] by
- Updated with extended test case and namespace support (fixes SPW, ROI and …
04/21/10:
- 16:58 Changeset [6167] by
- Add a very simple log4j configuration file for use with various main …
- 16:58 Changeset [6166] by
- Tweak (irrelevant) "External libraries" build directory.
- 15:11 Changeset [6165] by
- Fix up Eclipse classpaths: * Use build-eclipse instead of build/classes …
- 14:37 Changeset [6164] by
- Ported a few channel splitting fixes from trunk.
- 11:31 Changeset [6163] by
- Quick, sloppy launcher files for flow cytometry app.
- 11:04 Changeset [6162] by
- Fixed NPE.
- 10:33 Changeset [6161] by
- Few more OTF properties (critically no objective settings) to add to …
- 10:28 Changeset [6160] by
- Adjusted test case dependency slightly to get a little better coverage …
- 10:16 Changeset [6159] by
- Added tests for Dichroic, Filter, FilterSet, and OTF.
- 09:23 Changeset [6158] by
- Updated with new code generation. (OME-XML Subversion revision 518)
- 05:51 Changeset [6157] by
- Passing tests for <Detector/>, <LightSource/> and its sub-classes. Type …
04/20/10:
- 19:47 Changeset [6156] by
- Updated several more readers to respect MetadataOptions.
- 16:37 Changeset [6155] by
- Various cleanup and refactoring progress. * Progress on Bio-Formats …
- 16:34 Changeset [6154] by
- Create only one codec per instance of NativeND2Reader. This change avoids …
- 16:25 Changeset [6153] by
- Construct JAI ImageIO service only once per JPEG2000Codec instance.
- 15:18 Changeset [6152] by
- Changed some of the ServiceFactory logging from 'warn' to 'debug'.
- 14:55 Changeset [6151] by
- Added a couple of object linkage tests. Note that Detector creation …
- 12:32 Changeset [6150] by
- Updated to new infrastructure. (OME-XML Subversion revision 510)
- 12:09 Changeset [6149] by
- Added ROI population test.
- 11:59 Changeset [6148] by
- Updated the remainder of the SXM readers to respect MetadataOptions.
- 10:36 Changeset [6147] by
- Added minimal Plate object and a few tests for Instrument and Plate …
- 10:03 Changeset [6146] by
- Added object creation for the Instrument hierarchy.
- 09:57 Changeset [6145] by
- Make object creation a little more flexible in the test case.
- 09:51 Changeset [6144] by
- Made whitespace and style conform to LOCI guidelines.
- 07:46 Changeset [6143] by
- Full in/out support and test cases for 2010-04 working copy schema …
04/19/10:
- 16:07 Changeset [6142] by
- Fix a stupid mistake.
- 15:56 Changeset [6141] by
- Use generics where appropriate; fix miscellaneous warnings and issues.
- 14:53 Changeset [6140] by
- Updated more readers to respect MetadataOptions.
- 13:49 Changeset [6139] by
- Fixed a couple of bugs that prevented Nikon images with more than one …
- 13:27 Changeset [6138] by
- Committed actual class files for r6137 from 201004 code generation.
- 13:13 Changeset [6137] by
- Re-arranged enumeration locations, split between ome-xml and bio-formats …
- 12:18 Changeset [6136] by
- Enumeration types from the latest working copy schema (OME-XML Subversion …
- 10:51 Changeset [6135] by
- cheap compilation and run scripts
- 10:39 Changeset [6134] by
- updates for creating cmake files
04/18/10:
- 19:47 Changeset [6133] by
- Fix some minor unchecked warnings.
04/16/10:
- 20:17 Changeset [6132] by
- More progress on Bio-Formats Importer refactoring. Not totally happy …
- 17:43 Changeset [6131] by
- More progress on Bio-Formats Importer. Probably breaks some options.
- 15:34 Changeset [6130] by
- Progress on Bio-Formats Importer refactoring.
04/15/10:
- 17:05 Changeset [6129] by
- Updated more readers to respect MetadataOptions, and added some TIFF IFD …
- 14:37 Changeset [6128] by
- Fix some Eclipse warnings, clean up imports, minor progress on Importer …
04/14/10:
- 16:47 Changeset [6127] by
- Updated a few more readers to respect MetadataOptions.
- 11:56 Changeset [6126] by
- Fixed bug that caused a bunch of extra garbage bytes to be written to the …
- 11:50 Changeset [6125] by
- Improve robustness of color map parsing.
- 11:49 Changeset [6124] by
- Add explicit bounds checking to unpackBytes. Makes for nicer error …
- 11:12 Changeset [6123] by
- Hopefully fixed XML parsing problems introduced in r6000.
04/13/10:
- 16:21 Changeset [6122] by
- Set physical Z size, even if instrument data is not present.
- 16:01 Ticket #455 (Add support for Zip files with multiple entries) closed by
- fixed: (In [6121]) Preliminary support for reading Zip files with multiple …
- 16:01 Changeset [6121] by
- Preliminary support for reading Zip files with multiple entries. Closes …
- 15:05 Changeset [6120] by
- Remove tabs.
- 14:54 Changeset [6119] by
- Add note about alternate location for compiled class files.
- 12:22 Changeset [6118] by
- * Updated a few more readers to respect MetadataOptions. * Added utility …
04/12/10:
- 18:04 Changeset [6117] by
- * Updated Imaris readers to respect MetadataOptions. * Fixed a couple of …
- 15:44 Changeset [6116] by
- Updated a few more readers to respect MetadataOptions.
- 10:31 Ticket #484 (Investigate usage of FileChannel.map(...)) closed by
- fixed: See r6093 and r6100.
- 09:30 Changeset [6115] by
- Add Usage Messages and error handling
04/09/10:
- 15:37 Changeset [6114] by
- Begin rearranging some code.
- 14:27 Changeset [6113] by
- Fixed various whitespace issues in AmiraParameters, and updated a few more …
- 12:55 Changeset [6112] by
- Updated several readers to respect MetadataOptions.
- 09:59 Changeset [6111] by
- Fixed how channel indices are reset.
- 09:41 Changeset [6110] by
- add jar file support
- 09:40 Changeset [6109] by
- add jar file support
- 09:09 Ticket #487 (Add support for ECAT7 files) created by
- See examples files in data/ecat7/mark/.
04/08/10:
- 16:29 Changeset [6108] by
- Fixed a couple of TIFF export bugs.
- 14:34 Changeset [6107] by
- Make sure that all RandomAccessInputStreams are closed.
- 14:29 Changeset [6106] by
- add dependency lift file
- 14:08 Changeset [6105] by
- Prevent Image.CreationDate and PlaneTiming.DeltaT from being populated …
- 11:35 Changeset [6104] by
- * Make sure that DV log files are detected regardless of the …
- 11:25 Changeset [6103] by
- Adding options flags
- 11:23 Changeset [6102] by
- Adding option flags
- 10:40 Changeset [6101] by
- new
- 05:52 Changeset [6100] by
- Moved byte buffer map() vs. allocate() to a static block and the state …
04/07/10:
- 17:22 Changeset [6099] by
- * Fixed a DICOM offset bug. * Prevent Packbits codec from seeking past the …
- 14:36 Changeset [6098] by
- * Allow the comment delimiter to be changed in IniParser. * Fixed a whole …
04/06/10:
- 21:51 Changeset [6097] by
- Fixed NPE.
- 18:59 Changeset [6096] by
- Moved plane index parsing; this substantially reduces parsing time.
- 13:35 Changeset [6095] by
- Cleaned up BD Pathway reader a bit; the reader now parses more metadata …
- 11:10 Changeset [6094] by
- * Prevent Leica reader from reading beyond the end of the file. * Fixed a …
- 10:29 Changeset [6093] by
- Added byte buffer provider to compartmentalize the usage of map() vs. …
- 02:50 Changeset [6092] by
- Removed an unused import and fixed a potential null pointer exception as …
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