Timeline
08/02/10:
- 17:43 Ticket #516 (Allow metadata support documentation to be fully autogenerated) closed by
- fixed: (In [6762]) Initial work on fully autogenerated metadata support …
- 17:43 Changeset [6762] by
- Initial work on fully autogenerated metadata support documentation; it's a …
- 17:41 Changeset [6761] by
- Update OMERO library version number to 4.2.0.
- 17:30 Changeset [6760] by
- Remove tabs.
- 17:28 Changeset [6759] by
- Update OmeroReader to use OMERO 4.2 API.
- 15:26 Ticket #490 (Add support for PDS files) closed by
- fixed: (In [6758]) Added support for Perkin-Elmer densitometer data. Closes …
- 15:26 Changeset [6758] by
- Added support for Perkin-Elmer densitometer data. Closes #490.
- 13:02 Changeset [6757] by
- Reverted r6756, so that plugin tests no longer fail.
- 12:33 Changeset [6756] by
- Always reinitialize the 'core' variable; this prevents tests in …
- 12:26 Changeset [6755] by
- Ignore 'readme.txt' files.
07/30/10:
- 13:36 Changeset [6754] by
- Fixed BGR correction when opening sub-images. See QA #2583.
- 12:35 Ticket #526 (Parse metadata from S-FEG and Helios NanoLab TIFF files) created by
- The S-FEG and Helios NanoLab systems store metadata as key/value pairs in …
- 10:48 Ticket #525 (Files cannot be saved from ImageViewer unless '-omexml' option was passed ...) created by
- To reproduce: […] Select "File > Save". Enter any filename with a …
07/29/10:
- 20:20 Changeset [6753] by
- Fixed saveBytes and savePlane implementations to use the correct image …
- 14:27 Changeset [6752] by
- Document advantages of using the static library class loading approach.
- 13:41 Ticket #524 (Better documentation for command line tools) created by
- bfconvert, in particular, has some dangerously non-intuitive behavior. …
- 13:22 Ticket #523 (Bio-Formats Windowless Importer is broken) created by
- Attempting to use the Bio-Formats Windowless Importer with recent code …
- 12:59 Changeset [6751] by
- No longer use TiffData injection hack when validating OME-XML; OME-XML …
- 12:49 Changeset [6750] by
- Add Bio-Formats Importer to the File>Import menu.
- 12:16 Ticket #522 (Add support for Fuji LAS 3000 files) created by
- See data in data/fuji/venu/. The .img file appears to be raw pixels, and …
- 11:24 Changeset [6749] by
- Fixed OMEReaderWriterServiceImpl dependency checking and ome-io component …
07/28/10:
- 17:38 Changeset [6748] by
- Temporarily commented out URLHandleTest.
- 16:38 Ticket #519 (Implement new saveImage methods in BufferedImageWriter) closed by
- fixed: (In [6747]) * Added 'int getSeries()' method to IFormatWriter. * …
- 16:38 Changeset [6747] by
- * Added 'int getSeries()' method to IFormatWriter. * Implemented …
- 16:11 Ticket #273 (Some readers do not have sane file type checking) closed by
- fixed: (In [6746]) Remainder of type checking fixes. Closes #273.
- 16:11 Changeset [6746] by
- Remainder of type checking fixes. Closes #273.
- 13:09 Ticket #521 (Make Ant fail when tests fail) closed by
- fixed: (In [6745]) Updated overridden test targets to make Ant fail if any of the …
- 13:08 Changeset [6745] by
- Updated overridden test targets to make Ant fail if any of the tests …
- 10:28 Changeset [6744] by
- Force buffer reallocation if the previously allocated buffer is too small.
- 09:58 Changeset [6743] by
- Resolve references immediately, so that they are not lost with the …
07/27/10:
- 20:18 Changeset [6742] by
- More informative failure messages in sane used files test.
- 20:18 Changeset [6741] by
- Several more type checking fixes, see #273. Includes a fix for a very, …
- 16:12 Changeset [6740] by
- comments
- 15:32 Changeset [6739] by
- Extend the Boost_ADDITIONAL_VERSIONS hack to help CMake on Windows.
- 15:28 Changeset [6738] by
- Prevent Windows build from requiring dynamic Boost libraries (courtesy of …
- 14:51 Changeset [6737] by
- Fix errors with array allocation.
- 14:50 Changeset [6736] by
- More speed improvements and other cleanup to bfopen.m.
- 08:06 Changeset [6735] by
- * Handful of type checking fixes. See #273. * Strip whitespace from …
07/26/10:
- 18:39 Changeset [6734] by
- new
- 18:38 Changeset [6733] by
- Update
- 15:44 Changeset [6732] by
- Add a showinf easter egg. ;-)
- 13:59 Changeset [6731] by
- Stop using BufferedImageReader, for faster plane extraction.
- 11:45 Changeset [6730] by
- Merged r6729 into 4.2 branch.
- 11:43 Changeset [6729] by
- Ignore IFDs that do not contain an IMAGE_WIDTH entry. See QA #2570.
- 11:25 Changeset [6728] by
- Switch calls to MetadataTools.populatePixels and …
- 09:20 Changeset [6727] by
- Allow double images to be saved to TIFF.
07/23/10:
- 13:34 Changeset [6726] by
- A few more type checking fixes. See #273.
- 10:31 Changeset [6725] by
- Close file when finished reading data.
07/22/10:
- 19:16 Changeset [6724] by
- Fixed a bunch of type detection problems. See #273.
07/21/10:
- 19:58 Ticket #521 (Make Ant fail when tests fail) created by
- Currently, Ant test targets succeed even if one or more tests failed. To …
- 17:40 Changeset [6723] by
- Readd support for "-debug" flag to showinf and bfconvert.
- 17:36 Changeset [6722] by
- Add a utility method for enabling log4j logging without a configuration …
- 14:07 Changeset [6721] by
- whitespace only - a hudson test
- 11:32 Ticket #515 (Investigate physical size population for ScanR datasets) closed by
- fixed: (In [6720]) Populate physical pixel sizes, if present. Closes #515.
- 11:32 Changeset [6720] by
- Populate physical pixel sizes, if present. Closes #515.
07/20/10:
- 16:56 Changeset [6719] by
- Set BinData.Length to "0" to prevent validation errors.
- 16:55 Ticket #520 (Verify that generated OME-XML validates) created by
- r6719 fixed the most common error (missing BinData.Length), but some files …
- 16:32 Changeset [6718] by
- no change except whitespace - hudson test
- 16:11 Changeset [6717] by
- Eliminate excessive xmlvalid output.
- 14:51 Changeset [6716] by
- More fixes to LWF license code handling.
- 12:24 Changeset [6715] by
- Close open files to prevent "too many open files" error when exporting …
- 11:46 Changeset [6714] by
- Fix up support for LWF license codes.
- 09:29 Changeset [6713] by
- Prevent ArithmeticException if stage coordinates are not present.
- 09:05 Ticket #519 (Implement new saveImage methods in BufferedImageWriter) created by
- All of the existing saveImage methods in BufferedImageWriter are …
- 08:56 Changeset [6712] by
- Allow sane used file test to be run separately; useful for testing #273.
- 08:40 Changeset [6711] by
- Speed up plane access by using one reader for each constituent file.
07/19/10:
- 21:21 Changeset [6710] by
- * Fixed how ICS files with > 4 channels are read. * Fixed Channel …
- 19:08 Changeset [6709] by
- Added utility that prints out all of the files in a directory that are …
- 18:12 Changeset [6708] by
- Added one more date format to the list of acceptable TIFF date formats.
- 17:40 Changeset [6707] by
- Fixed problems with exporting multi-channel data.
- 17:35 Ticket #518 (Allow exporter plugin to export to multiple files) created by
- In particular, it would be nice to be able to export multi-file OME-TIFF …
- 14:07 Ticket #517 (Bio-Formats Importer progress bar is missing on some systems) created by
- The recent changes to the Bio-Formats Importer have resulted in some cases …
- 11:33 Changeset [6706] by
- Tweaked isThisType to automatically return false if the TIFF comment is an …
- 10:02 Changeset [6705] by
- Fixed bytes per pixel calculation for RGB data.
07/16/10:
- 11:30 Changeset [6704] by
- * Reverted r6703 stupidity. * Fixed Image5D display mode to work with …
07/15/10:
- 15:23 Changeset [6703] by
- Disable the "concatenate series" option when displaying with Image5D. See …
- 15:14 Changeset [6702] by
- * Fixed ROI retrieval logic in ImageJ import plugin. * Updated FV1000 …
- 14:19 Changeset [6701] by
- Fixed View5D instantiation; see #514.
07/14/10:
- 15:23 Ticket #516 (Allow metadata support documentation to be fully autogenerated) created by
- Right now, the metadata support documentation is autogenerated from the …
- 15:14 Ticket #515 (Investigate physical size population for ScanR datasets) created by
- Need to double-check that ScanR physical sizes are being populated …
- 14:54 Ticket #510 (Some Amira files throw an exception during setId) closed by
- invalid: The Amira software does not open either file, so I'm going to assume that …
- 13:47 Changeset [6700] by
- More robust Z position parsing. The value of 'absoluteZ' is now taken …
07/13/10:
- 17:57 Changeset [6699] by
- Fixed pixel data offset.
- 17:03 Milestone bio-formats-4.2 completed
- 16:16 Changeset [6698] by
- Fix problem with GUI locking when using LOCI Plugins Shortcut Window.
- 15:39 Changeset [6697] by
- First attempt at parsing stage coordinates from LSM files.
- 15:31 Changeset [6696] by
- Add toString method to StatusEvent, for debugging.
- 15:03 Ticket #514 (Fix Image5D and View5D view modes) created by
- There may be an issue with Image5D and View5D view modes, as they were not …
- 14:18 Ticket #511 (Compressed Amira file not read properly) closed by
- fixed: Fixed in r6695.
- 14:18 Changeset [6695] by
- Fixed problems with unaligned RLE-compressed images. Closes #511.
- 11:00 Ticket #513 (Exporting RGB images to OME-TIFF fails) closed by
- fixed: Fixed in r6694.
- 10:58 Changeset [6694] by
- Adjust SizeC internally when writing RGB OME-TIFF files. Closes #513.
07/12/10:
- 14:45 Ticket #513 (Exporting RGB images to OME-TIFF fails) created by
- This macro: […] produces this exception: […]
- 14:35 Changeset [6693] by
- Fixed ArrayIndexOutOfBoundsException when opening sub-images from 16- and …
- 14:28 Changeset [6692] by
- * Updated CellWorXReader to delegate to DeltavisionReader when reading …
- 13:14 Changeset [6691] by
- Backported r6689 to 4.2 branch.
- 12:57 Changeset [6690] by
- Initial version of CellWorX .pnl reader.
- 12:56 Changeset [6689] by
- Fixed emission wavelength parsing.
- 12:55 Changeset [6688] by
- Whitespace.
07/10/10:
- 09:44 Changeset [6687] by
- Fixed channel data is parsed from Leica LIF files that have had one or …
07/09/10:
- 14:22 Changeset [6686] by
- Fix up test targets in Ant build scripts.
- 10:47 Changeset [6685] by
- 4.2.0 release of LOCI tools.
- 10:38 Changeset [6684] by
- Updated what's new and switch trunk component version numbers to 5.0-DEV.
- 10:10 Changeset [6683] by
- Backport r6682 to 4.2 branch.
- 10:09 Changeset [6682] by
- Add a flag to disable tests with special requirements. All tests now pass.
- 10:04 Changeset [6681] by
- Only populate Objective.NominalMagnification if the magnification is …
- 09:48 Changeset [6680] by
- Backport r6679 to 4.2 branch.
- 09:40 Changeset [6679] by
- Better handling of 5+ channel data.
- 08:24 Changeset [6678] by
- Updated component version numbers in 4.2 branch.
07/08/10:
- 16:31 Changeset [6677] by
- Backport r6672,r6673,r6676 to 4.2 branch.
- 16:29 Changeset [6676] by
- Fix bug with dimensional extents between multiple series.
- 15:32 Changeset [6675] by
- Fix some Eclipse warnings.
- 15:22 Changeset [6674] by
- Fixed how Images are removed from a MetadataStore when exporting one …
- 15:13 Changeset [6673] by
- Better error handling when constructing base reader object.
- 15:13 Changeset [6672] by
- Fix typo.
- 15:13 Changeset [6671] by
- Define some constants for FakeReader defaults.
- 15:02 Changeset [6670] by
- Use native line endings for Bio-Formats C++ source code.
- 14:40 Changeset [6669] by
- Backport recent LOCI plugins progress to 4.2 branch.
- 14:35 Changeset [6668] by
- Fix autoscaling bugs, and rework autoscaling tests.
- 13:58 Changeset [6667] by
- * Updated undeclared namespace stripping logic to look for namespaces in …
- 10:39 Matlab edited by
- (diff)
- 10:07 Changeset [6666] by
- Catch NullPointerException when attempting to parse OME-XML comments.
- 09:47 Changeset [6665] by
- Only overwrite the dimensions if the new values are sane.
07/07/10:
- 20:17 Changeset [6664] by
- OMETiffReader.isThisType now checks whether or not the OME-XML block can …
- 15:55 Changeset [6663] by
- Merged recent OME-XML and core Bio-Formats changes into the 4.2 branch.
- 13:48 Changeset [6662] by
- Removed some obsolete hacks that prevented physical sizes from being …
- 12:38 Changeset [6661] by
- Better physical X/Y size parsing.
- 12:01 Changeset [6660] by
- Remove unnecessary thumbnail autoscaling logic.
- 11:54 Changeset [6659] by
- Disable 'Record modifications to virtual stack' option (broken anyway).
- 11:54 Changeset [6658] by
- Fix problem with virtual stack pixel types.
- 11:27 Changeset [6657] by
- Use 'uncalibrated' values for CompositeImage min/max.
- 10:52 Changeset [6656] by
- If TimeIncrement is missing, average DeltaT values for ImageJ time …
07/06/10:
- 19:58 Changeset [6655] by
- Added MetadataLevel.NO_OVERLAYS, and updated readers accordingly.
- 19:02 Changeset [6654] by
- Progress on Bio-Formats Importer: * Readd support for Ext.openImage and …
- 12:07 Changeset [6653] by
- Move reference handling until after attribute population for FilterSet …
- 11:56 Changeset [6652] by
- Re-run of code generation. ( ome-xml:r649)
- 10:58 Changeset [6651] by
- Handle class cast exceptions in ROI shape transformation.
- 09:34 Changeset [6650] by
- Handle namespace prefixes on nodes during parsing of the DOM.
07/05/10:
- 11:23 Changeset [6649] by
- Re-run of code generation; laser pumps can be any light source. …
- 11:04 Changeset [6648] by
- Remove any BinData elements from the OME-XML before it is written to the …
- 10:17 Changeset [6647] by
- Messed up logging by having an old version of the enum handler template, …
- 10:02 Changeset [6646] by
- Updated schema location to 2010-06.
- 09:50 Changeset [6645] by
- Fixed Objective parsing when Immersion and Correction are reversed.
- 09:48 Changeset [6644] by
- Re-run of code generation; DRY as a possible value for AIR immersion. …
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