Timeline
08/17/10:
- 19:29 Changeset [6806] by
- Initial version of Jar2Lib implementation.
- 15:12 Ticket #530 (BD Pathway reader doesn't fully populate original metadata hashtable) closed by
- fixed: (In [6805]) * Added convenience method to loci.common.IniList to flatten …
- 15:12 Changeset [6805] by
- * Added convenience method to loci.common.IniList to flatten the IniTables …
- 13:17 Changeset [6804] by
- Hackish fix for some files that have an incorrect dimension order.
- 12:44 Changeset [6803] by
- Backported r6802 to 4.1 branch.
- 12:09 Changeset [6802] by
- * Ignore missing L2D scans, instead of throwing an exception. * More …
- 10:20 Changeset [6801] by
- * Parse metadata from SimplePCI TIFFs. * Slightly better Z/T detection for …
- 08:08 Changeset [6800] by
- Remove invalid characters from strings that will later be parsed into …
08/16/10:
- 15:58 Ticket #263 (Bio-Formats configuration dialog) closed by
- fixed: > Ability to install native JPEG2000 codec if needed Bio-Formats decodes …
- 14:51 Matlab edited by
- (diff)
- 14:23 Changeset [6799] by
- Fixed a few Bio-Rad Gel offset bugs.
- 12:37 Changeset [6798] by
- Added 'Object getSeriesMetadataValue(String)' to IFormatReader.
- 12:05 Ticket #526 (Parse metadata from S-FEG and Helios NanoLab TIFF files) closed by
- fixed: (In [6797]) Added support for FEI TIFF files, specifically those from …
- 12:05 Changeset [6797] by
- Added support for FEI TIFF files, specifically those from S-FEG and Helios …
- 10:10 Ticket #520 (Verify that generated OME-XML validates) closed by
- fixed: (In [6796]) Remainder of OME-XML validation fixes. Closes #520.
- 10:10 Changeset [6796] by
- Remainder of OME-XML validation fixes. Closes #520.
08/13/10:
- 15:53 Changeset [6795] by
- Backport r6792 to 4.2 branch.
- 15:50 Changeset [6794] by
- Backport r6789 to 4.2 branch.
- 13:46 Changeset [6793] by
- Changed logging level of missing interface messages from 'warn' to …
- 11:33 Ticket #528 (LUTs are lost in virtual stack mode) closed by
- fixed: (In [6792]) Preserve LUTs in virtual stack mode. Closes #528.
- 11:33 Changeset [6792] by
- Preserve LUTs in virtual stack mode. Closes #528.
- 09:18 Changeset [6791] by
- More OME-XML validation fixes, see #520.
- 09:06 Ticket #487 (Add support for ECAT7 files) closed by
- fixed: (In [6790]) Initial version of ECAT 7 reader. Closes #487.
- 09:06 Changeset [6790] by
- Initial version of ECAT 7 reader. Closes #487.
08/12/10:
- 14:45 Changeset [6789] by
- Fix for NullPointerException.
08/11/10:
- 17:38 Ticket #523 (Bio-Formats Windowless Importer is broken) closed by
- fixed: (In [6788]) If ImporterOptions.getId() returns null, prompt for a file …
- 17:38 Changeset [6788] by
- If ImporterOptions.getId() returns null, prompt for a file regardless of …
- 17:01 Ticket #530 (BD Pathway reader doesn't fully populate original metadata hashtable) created by
- BD Pathway datasets have lots of metadata that can't be properly mapped to …
- 16:35 Ticket #529 (Parse metadata from TIFFs produced by Nikon Elements) created by
- The metadata is very similar to what is in new ND2 files (i.e. lots of …
- 16:30 Changeset [6787] by
- Added extra sanity check when parsing doubles.
- 15:48 Changeset [6786] by
- More OME-XML validation fixes, see #520.
08/10/10:
- 14:39 Ticket #524 (Better documentation for command line tools) closed by
- fixed: (In [6785]) * bfconvert and showinf now exit if an unknown flag or …
- 14:39 Changeset [6785] by
- * bfconvert and showinf now exit if an unknown flag or argument is …
- 14:06 Changeset [6784] by
- More OME-XML validation fixes. See #520.
- 07:52 Changeset [6783] by
- Removed not-yet-existent CRIReader.
08/09/10:
- 13:20 Changeset [6782] by
- Parse physical pixel sizes for all series, instead of applying the first …
- 13:07 Changeset [6781] by
- Fixed tests in components/bio-formats; all tests should now pass.
- 11:54 Changeset [6780] by
- More thoroughly parse Z position values from single-file datasets.
- 10:22 Changeset [6779] by
- Fixed tag alignment problem.
- 09:34 Changeset [6778] by
- Prevent SlidebookReader from passing a negative int to setSeries.
08/06/10:
- 17:31 Changeset [6777] by
- Fix problem with ij.jar dependency resolution.
- 16:56 Changeset [6776] by
- First cut at Maven-based build system and directory layout for LOCI …
- 15:56 Changeset [6775] by
- Experimental branch for Maven-based builds.
- 11:39 Ticket #528 (LUTs are lost in virtual stack mode) created by
- When opening a single-channel dataset with the Bio-Formats Importer with …
08/05/10:
- 17:32 Changeset [6774] by
- More robust behavior when ome-xml service is unavailable. But still …
- 17:05 Changeset [6773] by
- Update minimum ImageJ version to 1.43, since …
- 16:29 Changeset [6772] by
- Update service properties to match OMEReaderWriterService package change.
- 16:26 Changeset [6771] by
- Fix SVN and Trac links for OMEReaderWriterService.
- 16:25 Changeset [6770] by
- Fix ome-io test compile errors.
- 16:04 Changeset [6769] by
- Remove soft dependency on ome-io from bio-formats component. The ome-io …
- 11:17 Changeset [6768] by
- Fixed several OME-XML validation issues. See #520.
08/04/10:
- 15:51 Changeset [6767] by
- Fixed a couple of silly Photoshop bugs.
- 15:18 Ticket #525 (Files cannot be saved from ImageViewer unless '-omexml' option was passed ...) closed by
- fixed: (In [6766]) Fixed file export from ImageViewer. Closes #525.
- 15:18 Changeset [6766] by
- Fixed file export from ImageViewer. Closes #525.
- 12:03 Ticket #527 (Add support for multiple positions in one Zeiss LSM file) created by
- See zeiss-lsm/ruben/3z2positions5timesteps.lsm. We currently assume that …
- 10:39 Changeset [6765] by
- Only populate Objective.NominalMagnification if the magnification stored …
08/03/10:
- 12:51 Changeset [6764] by
- Fixed implementation of getCurrentFile() in ImageReader. This is the real …
- 08:54 Changeset [6763] by
- Adjusted AnalyzeReader's isThisType implementations, so that AnalyzeReader …
08/02/10:
- 17:43 Ticket #516 (Allow metadata support documentation to be fully autogenerated) closed by
- fixed: (In [6762]) Initial work on fully autogenerated metadata support …
- 17:43 Changeset [6762] by
- Initial work on fully autogenerated metadata support documentation; it's a …
- 17:41 Changeset [6761] by
- Update OMERO library version number to 4.2.0.
- 17:30 Changeset [6760] by
- Remove tabs.
- 17:28 Changeset [6759] by
- Update OmeroReader to use OMERO 4.2 API.
- 15:26 Ticket #490 (Add support for PDS files) closed by
- fixed: (In [6758]) Added support for Perkin-Elmer densitometer data. Closes …
- 15:26 Changeset [6758] by
- Added support for Perkin-Elmer densitometer data. Closes #490.
- 13:02 Changeset [6757] by
- Reverted r6756, so that plugin tests no longer fail.
- 12:33 Changeset [6756] by
- Always reinitialize the 'core' variable; this prevents tests in …
- 12:26 Changeset [6755] by
- Ignore 'readme.txt' files.
07/30/10:
- 13:36 Changeset [6754] by
- Fixed BGR correction when opening sub-images. See QA #2583.
- 12:35 Ticket #526 (Parse metadata from S-FEG and Helios NanoLab TIFF files) created by
- The S-FEG and Helios NanoLab systems store metadata as key/value pairs in …
- 10:48 Ticket #525 (Files cannot be saved from ImageViewer unless '-omexml' option was passed ...) created by
- To reproduce: […] Select "File > Save". Enter any filename with a …
07/29/10:
- 20:20 Changeset [6753] by
- Fixed saveBytes and savePlane implementations to use the correct image …
- 14:27 Changeset [6752] by
- Document advantages of using the static library class loading approach.
- 13:41 Ticket #524 (Better documentation for command line tools) created by
- bfconvert, in particular, has some dangerously non-intuitive behavior. …
- 13:22 Ticket #523 (Bio-Formats Windowless Importer is broken) created by
- Attempting to use the Bio-Formats Windowless Importer with recent code …
- 12:59 Changeset [6751] by
- No longer use TiffData injection hack when validating OME-XML; OME-XML …
- 12:49 Changeset [6750] by
- Add Bio-Formats Importer to the File>Import menu.
- 12:16 Ticket #522 (Add support for Fuji LAS 3000 files) created by
- See data in data/fuji/venu/. The .img file appears to be raw pixels, and …
- 11:24 Changeset [6749] by
- Fixed OMEReaderWriterServiceImpl dependency checking and ome-io component …
07/28/10:
- 17:38 Changeset [6748] by
- Temporarily commented out URLHandleTest.
- 16:38 Ticket #519 (Implement new saveImage methods in BufferedImageWriter) closed by
- fixed: (In [6747]) * Added 'int getSeries()' method to IFormatWriter. * …
- 16:38 Changeset [6747] by
- * Added 'int getSeries()' method to IFormatWriter. * Implemented …
- 16:11 Ticket #273 (Some readers do not have sane file type checking) closed by
- fixed: (In [6746]) Remainder of type checking fixes. Closes #273.
- 16:11 Changeset [6746] by
- Remainder of type checking fixes. Closes #273.
- 13:09 Ticket #521 (Make Ant fail when tests fail) closed by
- fixed: (In [6745]) Updated overridden test targets to make Ant fail if any of the …
- 13:08 Changeset [6745] by
- Updated overridden test targets to make Ant fail if any of the tests …
- 10:28 Changeset [6744] by
- Force buffer reallocation if the previously allocated buffer is too small.
- 09:58 Changeset [6743] by
- Resolve references immediately, so that they are not lost with the …
07/27/10:
- 20:18 Changeset [6742] by
- More informative failure messages in sane used files test.
- 20:18 Changeset [6741] by
- Several more type checking fixes, see #273. Includes a fix for a very, …
- 16:12 Changeset [6740] by
- comments
- 15:32 Changeset [6739] by
- Extend the Boost_ADDITIONAL_VERSIONS hack to help CMake on Windows.
- 15:28 Changeset [6738] by
- Prevent Windows build from requiring dynamic Boost libraries (courtesy of …
- 14:51 Changeset [6737] by
- Fix errors with array allocation.
- 14:50 Changeset [6736] by
- More speed improvements and other cleanup to bfopen.m.
- 08:06 Changeset [6735] by
- * Handful of type checking fixes. See #273. * Strip whitespace from …
07/26/10:
- 18:39 Changeset [6734] by
- new
- 18:38 Changeset [6733] by
- Update
- 15:44 Changeset [6732] by
- Add a showinf easter egg. ;-)
- 13:59 Changeset [6731] by
- Stop using BufferedImageReader, for faster plane extraction.
- 11:45 Changeset [6730] by
- Merged r6729 into 4.2 branch.
- 11:43 Changeset [6729] by
- Ignore IFDs that do not contain an IMAGE_WIDTH entry. See QA #2570.
- 11:25 Changeset [6728] by
- Switch calls to MetadataTools.populatePixels and …
- 09:20 Changeset [6727] by
- Allow double images to be saved to TIFF.
07/23/10:
- 13:34 Changeset [6726] by
- A few more type checking fixes. See #273.
- 10:31 Changeset [6725] by
- Close file when finished reading data.
07/22/10:
- 19:16 Changeset [6724] by
- Fixed a bunch of type detection problems. See #273.
07/21/10:
- 19:58 Ticket #521 (Make Ant fail when tests fail) created by
- Currently, Ant test targets succeed even if one or more tests failed. To …
- 17:40 Changeset [6723] by
- Readd support for "-debug" flag to showinf and bfconvert.
- 17:36 Changeset [6722] by
- Add a utility method for enabling log4j logging without a configuration …
- 14:07 Changeset [6721] by
- whitespace only - a hudson test
- 11:32 Ticket #515 (Investigate physical size population for ScanR datasets) closed by
- fixed: (In [6720]) Populate physical pixel sizes, if present. Closes #515.
- 11:32 Changeset [6720] by
- Populate physical pixel sizes, if present. Closes #515.
07/20/10:
- 16:56 Changeset [6719] by
- Set BinData.Length to "0" to prevent validation errors.
- 16:55 Ticket #520 (Verify that generated OME-XML validates) created by
- r6719 fixed the most common error (missing BinData.Length), but some files …
- 16:32 Changeset [6718] by
- no change except whitespace - hudson test
- 16:11 Changeset [6717] by
- Eliminate excessive xmlvalid output.
- 14:51 Changeset [6716] by
- More fixes to LWF license code handling.
- 12:24 Changeset [6715] by
- Close open files to prevent "too many open files" error when exporting …
- 11:46 Changeset [6714] by
- Fix up support for LWF license codes.
- 09:29 Changeset [6713] by
- Prevent ArithmeticException if stage coordinates are not present.
- 09:05 Ticket #519 (Implement new saveImage methods in BufferedImageWriter) created by
- All of the existing saveImage methods in BufferedImageWriter are …
- 08:56 Changeset [6712] by
- Allow sane used file test to be run separately; useful for testing #273.
- 08:40 Changeset [6711] by
- Speed up plane access by using one reader for each constituent file.
07/19/10:
- 21:21 Changeset [6710] by
- * Fixed how ICS files with > 4 channels are read. * Fixed Channel …
- 19:08 Changeset [6709] by
- Added utility that prints out all of the files in a directory that are …
- 18:12 Changeset [6708] by
- Added one more date format to the list of acceptable TIFF date formats.
- 17:40 Changeset [6707] by
- Fixed problems with exporting multi-channel data.
- 17:35 Ticket #518 (Allow exporter plugin to export to multiple files) created by
- In particular, it would be nice to be able to export multi-file OME-TIFF …
- 14:07 Ticket #517 (Bio-Formats Importer progress bar is missing on some systems) created by
- The recent changes to the Bio-Formats Importer have resulted in some cases …
- 11:33 Changeset [6706] by
- Tweaked isThisType to automatically return false if the TIFF comment is an …
- 10:02 Changeset [6705] by
- Fixed bytes per pixel calculation for RGB data.
Note: See TracTimeline
for information about the timeline view.
