Timeline
12/02/10:
- 18:12 Ticket #611 (ICS export should preserve more metadata) created by
- Most importantly, physical dimensions and the number of valid bits per …
- 12:17 Changeset [7311] by
- A couple of fixes for reading a sub-image of the second channel in 2 …
- 11:30 Changeset [7310] by
- Added code allowing jar paths and trailing slashes (or absence thereof) on …
- 03:18 Changeset [7309] by
- Fix min/max calculation in the "slush" area outside the actual pixel count …
12/01/10:
- 21:57 Ticket #610 (Some AVI files have skewed scanlines) created by
- See files in data/avi/prairie/. The files play fine in mplayer, so we …
- 20:16 Changeset [7308] by
- Added binning, moved some enums, changed parameter order.
- 20:13 Changeset [7307] by
- Moved in fit region, function, and algorithm enums.
- 20:12 Changeset [7306] by
- Minor tweak; removed debugging printout.
- 20:11 Changeset [7305] by
- Used by3x3 and 5x5 binning subplugins. 7x7 anyone?
- 20:11 Changeset [7304] by
- Binning subplugin, sums 5x5 or pixel and 24 neighbors.
- 20:10 Changeset [7303] by
- Binning subplugin, sums 3x3 or pixel and its 8 neighbors.
- 20:09 Changeset [7302] by
- Finds all binning subplugins and builds a list of names to choose.
- 20:09 Changeset [7301] by
- Annotation that designates a binning subplugin.
- 20:08 Changeset [7300] by
- Interface that designated a binning subplugin.
- 20:07 Changeset [7299] by
- Moved fit function & region enums.
- 20:07 Changeset [7298] by
- Moved fit function & region enums.
- 20:06 Changeset [7297] by
- Moved fit function & region enums.
- 20:06 Changeset [7296] by
- Minor tweaks.
- 20:05 Changeset [7295] by
- Moved fit function & region enums.
- 20:04 Changeset [7294] by
- Added binning. Changed parameter order.
- 20:02 Changeset [7293] by
- ImageStack.addSlice method I was calling went away; substituted with a …
- 20:01 Changeset [7292] by
- Changed the parameter order. Tidied up.
- 19:59 Changeset [7291] by
- Changed the parameter order.
- 19:58 Changeset [7290] by
- Added method to get number of components in the fit.
- 19:57 Changeset [7289] by
- Removed methods to get/set chi square. Chi square is now kept along with …
- 19:54 Changeset [7288] by
- Added function to get number of components in the fit.
- 17:03 Changeset [7287] by
- Parse some more (undocumented) metadata from STK files, including channel …
- 16:29 Changeset [7286] by
- Fix problem with skipping past EOF.
- 16:29 Changeset [7285] by
- Add compression type to original metadata table.
- 07:57 Changeset [7284] by
- Fixed minMaxDone population. Much more thorough test case that includes …
- 06:05 Changeset [7283] by
- Solution for minima and maxima calculation when using block based …
- 04:11 Changeset [7282] by
- Fix documentation locations and header comment in XML annotation test.
11/30/10:
- 11:34 Ticket #609 (Add option to bfconvert for saving autoscaled images) created by
- Right now, bfconvert always saves images using the same bit depth as the …
- 10:46 Changeset [7281] by
- Corrected a missing end brace in the BFITK plug-in code.
- 09:11 Changeset [7280] by
- Close readers left open by the openImage/openSubImage macro functions.
11/29/10:
- 19:30 Ticket #608 (Zip file URLs are not supported) created by
- For example: […] produces this lovely exception: […] It should …
- 19:14 Changeset [7279] by
- Merged Autoscale help text changes into 4.2: r7276, r7277, and r7278.
- 19:12 Changeset [7278] by
- Fixed one more typo.
- 17:21 Changeset [7277] by
- Fix typo.
- 16:01 Changeset [7276] by
- Clarify Autoscale help text. These changes are based on updated text …
- 12:54 Changeset [7275] by
- Updated metadata support documentation.
- 11:53 Changeset [7274] by
- Updated version numbers to 4.3-DEV.
- 11:52 Changeset [7273] by
- Updated version numbers to 4.2.2.
- 10:57 Changeset [7272] by
- Merged r7256 into 4.2.
- 10:56 Changeset [7271] by
- Merged r7255 and r7257 into 4.2.
- 10:55 Changeset [7270] by
- Merged r7253 into 4.2.
- 10:55 Changeset [7269] by
- Merged FV1000 reader changes into 4.2: r7249 and r7250.
- 10:54 Changeset [7268] by
- Merged r7245 into 4.2.
- 10:54 Changeset [7267] by
- Merged r7239 into 4.2.
- 10:53 Changeset [7266] by
- Merged BufferedImage unpacking fixes into 4.2: r7236 and r7254.
- 10:51 Changeset [7265] by
- Merged r7228 to 4.2.
- 10:49 Changeset [7264] by
- Merged r7225 into 4.2.
- 10:47 Changeset [7263] by
- Merged file handle fix and tests into 4.2: r7226, r7230, and r7231.
- 10:44 Changeset [7262] by
- Merged ImageJ plugin changes into 4.2: r7210, r7238, and r7258.
- 10:41 Changeset [7261] by
- Merged r7220 into 4.2.
- 10:13 Changeset [7260] by
- * Skip over empty .lsm files instead of throwing an EOFException. * …
- 09:19 Changeset [7259] by
- Improved stage position parsing.
11/26/10:
- 17:31 Changeset [7258] by
- Fixed ImagePlus retrieval methods so that the calibration is properly …
- 15:52 Changeset [7257] by
- Fixed calculation in r7255 so that tests pass again.
- 15:33 Changeset [7256] by
- Fixed interleaving bugs in ImageInfo and ImageTools.make24Bits.
- 15:33 Changeset [7255] by
- Better image count calculation; this fixes the case when we have multiple …
- 15:32 Changeset [7254] by
- Fixed small bug in r7236 that prevented multi-channel 16-bit …
- 15:31 Changeset [7253] by
- Fixed APNG writer to properly handle interleaved little-endian data.
- 11:21 Ticket #607 (Drag and drop on shortcut window produces "Open" dialog) closed by
- fixed: (In [7252]) Fixed dragging and dropping so that an "Open" dialog is not …
- 11:21 Changeset [7252] by
- Fixed dragging and dropping so that an "Open" dialog is not shown and …
- 10:24 Changeset [7251] by
- Catch IOException when parsing ROIs, so that we can still read the file if …
11/25/10:
- 14:32 Changeset [7250] by
- Better parsing of ValidBitCounts.
- 14:13 Changeset [7249] by
- Add debugging statements for FV1000 INI entries.
- 11:27 Changeset [7248] by
- Merging r7247 from Trunk.
- 05:37 Changeset [7247] by
- Restoring XML annotation write testing (See omero:#3269); re-run of code …
11/24/10:
- 16:04 Changeset [7246] by
- Fixed channel name population.
- 15:47 Ticket #607 (Drag and drop on shortcut window produces "Open" dialog) created by
- It really shouldn't do that, since we've already specified which file …
- 15:31 Changeset [7245] by
- Add ability to specify bitsPerPixel to fake reader.
- 12:46 Changeset [7244] by
- Fixed dimension adjustment for spool files.
- 12:38 Ticket #606 (Try to eliminate the updater's file renaming requirement on Windows) created by
- 10:37 Changeset [7243] by
- Merging r7240,r7241 and r7242 from Trunk.
- 09:38 Changeset [7242] by
- These types of comparisons no longer work and the XML annotation test …
- 09:16 Changeset [7241] by
- Fix build, making sure that the stylesheet is included in the ome-xml JAR.
- 07:13 Changeset [7240] by
- Proper XML annotation support (See omero:#3269); re-run of code …
11/23/10:
- 19:31 Ticket #605 (OMEXMLMetadata objects used by OMETiffWriter can not be re-used) closed by
- fixed: (In [7239]) Remove BinData elements from a copy of the writer's …
- 19:31 Changeset [7239] by
- Remove BinData elements from a copy of the writer's MetadataRetrieve, …
- 17:37 Changeset [7238] by
- * Added macro functions for retrieving physical size and version …
- 16:50 Changeset [7237] by
- Preserve physical pixel sizes when writing vanilla TIFF files.
- 16:27 Changeset [7236] by
- * Properly unpack 16-bit BufferedImages into a byte array. Fix courtesy …
- 10:53 Changeset [7235] by
- Override get*BitLookupTable() methods so that files with a different LUT …
- 10:19 Changeset [7234] by
- Updated the bf-itk plug-in so that it no longer tries to instantiate a JVM …
11/22/10:
- 13:21 Changeset [7233] by
- Formatting change only.
- 13:09 Changeset [7232] by
- Added dialog to choose what to display, was hard-coded.
- 11:51 Changeset [7231] by
- Use an ImageWriter instead of a TiffWriter so that OME-TIFF files are …
- 11:31 Changeset [7230] by
- File handle open/close logging at the TRACE level and a test case to pick …
- 10:35 Changeset [7229] by
- Prevent NPEs if detector metadata is missing.
- 10:30 Ticket #597 (Add support for .aim files) closed by
- fixed: (In [7228]) Added reader for .aim files. Closes #597.
- 10:30 Changeset [7228] by
- Added reader for .aim files. Closes #597.
- 09:24 Changeset [7227] by
- Use the sum of all position values stored for a particular position …
- 07:28 Changeset [7226] by
- Attempt to fix issues with leaking file handles during planar writing …
11/19/10:
- 19:59 Changeset [7225] by
- Switched getPixelTypes()/getPixelTypes(String) delegation, so that …
- 16:35 Changeset [7224] by
- Fixed pixel offset bug.
- 14:45 Ticket #596 (Recorded macros contain "open" twice) closed by
- fixed: (In [7223]) Prevent the 'open' option from being recorded twice. Closes …
- 14:45 Changeset [7223] by
- Prevent the 'open' option from being recorded twice. Closes #596. This …
- 11:42 Ticket #586 (Preserve custom color options) closed by
- fixed: (In [7222]) Preserve custom color choices. Closes #586.
- 11:42 Changeset [7222] by
- Preserve custom color choices. Closes #586.
- 10:40 Ticket #605 (OMEXMLMetadata objects used by OMETiffWriter can not be re-used) created by
- This will fail: […] because the writer strips out the (required) …
11/18/10:
- 11:33 Changeset [7221] by
- Modified build.xml to copy platform-specific files from the …
11/17/10:
- 06:10 Ticket #604 (Move "no OME-XML" message out of OMETiffReader) created by
- ...mostly so that we can remove the OMETiffReader import from …
- 05:28 Ticket #569 (Add support for JPEG-compressed AVIs) closed by
- fixed: (In [7220]) Added support for JPEG-compressed AVIs. Closes #569.
- 05:28 Changeset [7220] by
- Added support for JPEG-compressed AVIs. Closes #569.
- 03:19 Changeset [7219] by
- Merged r7179 into 4.2.
- 03:14 Ticket #525 (Files cannot be saved from ImageViewer unless '-omexml' option was passed ...) closed by
- fixed: (In [7218]) Fixed ImageViewer's default metadata population; closes #525.
- 03:14 Changeset [7218] by
- Fixed ImageViewer's default metadata population; closes #525.
11/16/10:
- 20:50 Changeset [7217] by
- Fixed bug. Now each channel can have it's own unique ranges for …
- 20:32 Changeset [7216] by
- Added logic to calculate nearest two digit values for minimum and maximum. …
- 20:29 Changeset [7215] by
- New abstract base class for multiple color interpolation colorizers.
- 20:29 Changeset [7214] by
- Added new method to generate a color bar. Added javadoc.
- 20:29 Changeset [7213] by
- Added new method to generate a color bar. Added javadoc.
- 20:28 Changeset [7212] by
- Added new method to generate a color bar. Added javadoc.
- 13:16 Ticket #598 (ImageViewer's file chooser extensions are wrong) closed by
- fixed: (In [7211]) Fixed FileFilter construction method so that it unwraps …
- 13:16 Changeset [7211] by
- Fixed FileFilter construction method so that it unwraps WriterWrappers. …
- 05:38 Ticket #603 (Move get/setMetadataOptions methods to IFormatReader) created by
- Both methods are implemented in FormatReader, but should be declared in …
- 05:34 Ticket #602 (Move MetadataLevel, MetadataOptions, and DefaultMetadataOptions) created by
- All three classes should be moved from loci.formats.in to loci.formats.
- 05:05 Ticket #601 (Investigate using MediaUtil for block-based JPEG decoding) created by
- See: http://mediachest.sourceforge.net/mediautil This would be …
- 04:34 Ticket #600 (Make sure that JPEG-2000 decoding works in parallel) created by
- We would like to be able to decode JPEG-2000 tiles (as stored in histology …
- 03:55 Ticket #599 (Add optimal tile size methods) created by
- Add new methods to IFormatReader that return the optimal tile width and …
- 02:50 Ticket #590 (Series dialog should indicate the total number of series) closed by
- fixed: (In [7210]) Added series count to series dialog. Closes #590.
- 02:50 Changeset [7210] by
- Added series count to series dialog. Closes #590.
11/15/10:
- 20:32 Changeset [7209] by
- Display plugin, in progress.
- 16:48 Changeset [7208] by
- Backported r7207 to 4.2.
- 16:31 Changeset [7207] by
- Switched around tag parsing so that missing UIC2/UIC4 tags do not prevent …
11/12/10:
- 21:30 Changeset [7206] by
- Added analysis plugin. Made gray scale a separate class.
- 21:16 Changeset [7205] by
- Kludged up this class to fix a problem with IJ's StackWindow.
- 21:13 Changeset [7204] by
- Interface that communicates pixel selection by clicking on the gray scale …
- 21:10 Changeset [7203] by
- Made a separate interface to display the gray scale image. Handles …
- 21:09 Changeset [7202] by
- Made a separate class to display the gray scale image. Handles multiple …
- 21:09 Changeset [7201] by
- Tidied up comment.
- 21:08 Changeset [7200] by
- Loads a plugin to analyze fit results, using SezPoz.
- 21:07 Changeset [7199] by
- Annotation for plugins that analyze fit results.
- 21:07 Changeset [7198] by
- Interface for plugins that analyze fit results.
- 21:05 Changeset [7197] by
- A VisAD analysis plugin.
- 21:05 Changeset [7196] by
- Stub of an export to text plugin.
- 21:04 Changeset [7195] by
- Dynamically sets minimum, as well as maximum. TIdied up code & added …
- 21:03 Changeset [7194] by
- Dynamically sets minimum, as well as maximum. TIdied up code & added …
- 21:03 Changeset [7193] by
- Dynamically sets minimum, as well as maximum. TIdied up code & added …
- 21:03 Changeset [7192] by
- Dynamically sets minimum, as well as maximum. TIdied up code & added …
- 21:02 Changeset [7191] by
- Dynamically sets minimum, as well as maximum. TIdied up code & added …
- 21:02 Changeset [7190] by
- Dynamically sets minimum, as well as maximum. TIdied up code & added …
- 21:02 Changeset [7189] by
- Dynamically sets minimum, as well as maximum. TIdied up code & added …
- 21:02 Changeset [7188] by
- Dynamically sets minimum, as well as maximum. TIdied up code & added …
- 21:01 Changeset [7187] by
- Save channel with pixel, as well as x and y.
- 21:01 Changeset [7186] by
- Save channel with pixel, as well as x and y.
- 13:02 Milestone bio-formats-4.2.1 completed
- 12:24 Changeset [7185] by
- Tagged 4.2.1 release of LOCI tools.
- 10:08 Ticket #598 (ImageViewer's file chooser extensions are wrong) created by
- If you select "File > Save" from ImageViewer, the resulting file chooser …
- 09:58 Changeset [7184] by
- Updated version numbers to "4.2.1".
- 08:49 Changeset [7183] by
- Fixed a couple of bugs in ImageConverter.
- 08:46 Ticket #525 (Files cannot be saved from ImageViewer unless '-omexml' option was passed ...) reopened by
- With this command: […] This exception now appears when trying to save …
11/11/10:
- 11:13 Ticket #597 (Add support for .aim files) created by
- See files in data/aim/harry. The image dimensions start at 0x38; they are …
- 09:04 Changeset [7182] by
- Updated what's new for today's release.
11/10/10:
- 09:30 Changeset [7181] by
- Updated post-build instructions to reflect the removal of ITKFactories …
- 09:27 Changeset [7180] by
- Modified CmakeLists.txt for the BF-ITK build so that it will no longer …
11/09/10:
- 16:52 Changeset [7179] by
- Add BitsPerPixel to Bio-Formats Importer's Original Metadata window.
- 15:42 Ticket #596 (Recorded macros contain "open" twice) created by
- If you attempt to record a macro for the Bio-Formats Importer plugin, you …
- 15:26 Changeset [7178] by
- Don't correct the channel count in the case of RGB images.
- 10:01 Changeset [7177] by
- Added developer comments
- 09:48 Changeset [7176] by
- Test Update
11/08/10:
- 20:58 Changeset [7175] by
- Changed ome-io component back to using Java 1.5.
- 12:23 Changeset [7174] by
- * Updated stylesheets to ome-xml:r692. * Added test for Channel.Color.
- 11:26 Changeset [7173] by
- Demo using EJB components on Glassfish, supporting multi-language …
- 11:20 Changeset [7172] by
- Demo using EJB components on Glassfish, supporting multi-language …
- 11:19 Changeset [7171] by
- Initial import of the 'server side' implementation for the EJB, Hessian …
- 10:50 Changeset [7170] by
- Demo using EJB components on Glassfish, supporting multi-language …
11/06/10:
- 09:50 Changeset [7169] by
- Backported r6515, r6527, and most of r7071 to fix a few problems with …
11/05/10:
- 21:46 Changeset [7168] by
- Switched to tau from lambda. Added stretched exponential fitting. …
- 21:38 Changeset [7167] by
- Added setFittedComponents and refineFit, to enable cumulative curve …
- 21:37 Changeset [7166] by
- Added setFittedComponents and refineFit, to enable cumulative curve …
- 21:35 Changeset [7165] by
- Comment added.
- 21:35 Changeset [7164] by
- Comment added.
- 21:32 Changeset [7163] by
- Convert lambda to tau.
- 21:31 Changeset [7162] by
- Convert lambda to tau.
- 21:29 Changeset [7161] by
- Added get/set X/Y, needed to save fit results.
- 21:27 Changeset [7160] by
- Was using lambda, now use tau.
- 21:26 Changeset [7159] by
- Added get/set X/Y, these are needed to save the fit results.
- 15:51 Changeset [7158] by
- Fixes for truncated .dv files from QA #2988 and #2989.
- 12:42 Changeset [7157] by
- Remove any extra channels from OME-TIFF files. See omero:#3250, QA #2973.
- 10:32 Changeset [7156] by
- Hackish fix for potential IndexOutOfBoundsException; the real fix should …
11/04/10:
- 17:58 Ticket #595 (Overwriting compressed planes doesn't always work) created by
- If the new plane's compressed size is less than or equal to the old …
- 17:50 Changeset [7155] by
- Fix for overwriting TIFF planes.
- 13:41 Changeset [7154] by
- Fixed conversion of LaserMedium attributes with value "Unknown".
- 12:20 Ticket #594 (Double-check Image -> ROI linkages) created by
- Right now, I think most (all?) of the readers that populate ROIs do not …
- 11:54 SlideFormats edited by
- (diff)
- 10:49 Changeset [7153] by
- Only populate LightPath references if the LSIDs are not null.
- 10:26 Changeset [7152] by
- Allow .rec extension for MRC files. isThisType(RandomAccessInputStream) …
11/03/10:
- 16:14 Changeset [7151] by
- Updated showinf help text.
- 13:31 Changeset [7150] by
- Updated C++ headers.
11/02/10:
- 20:05 Changeset [7149] by
- A bunch of little export fixes.
- 10:40 Ticket #593 (Add support for Micro-CT VOL files) created by
- See data in micro-ct/amin/.
Note: See TracTimeline
for information about the timeline view.
