Timeline


and

02/04/11:

12:01 Changeset [7613] by rlentz
Progress on OpenCL iterative 3D deconvolution.

02/02/11:

04:45 Ticket #425 (FB 863: Allow sending feedback from loci tools) closed by curtis
fixed: moved to  ome:#4089
04:45 Ticket #473 (Support for CRi .im3 format) closed by curtis
fixed: moved to  ome:#4119
04:45 Ticket #314 (Add support for vector data in PS/EPS files) closed by curtis
fixed: moved to  ome:#4102
04:45 Ticket #559 (LSM reader XT linescan opened as XY) closed by curtis
fixed: moved to  ome:#4152
04:45 Ticket #483 (Add support for Matlab matrix files) closed by curtis
fixed: moved to  ome:#4124
04:45 Ticket #169 (LegacyQTWriter cannot save using Motion JPEG-B codec) closed by curtis
fixed: moved to  ome:#4088
04:45 Ticket #172 (Better usage of JAI Image I/O Tools) closed by curtis
fixed: moved to  ome:#4090
04:45 Ticket #286 (Investigate improving AVI support based on new AVI_Reader) closed by curtis
fixed: moved to  ome:#4095
04:45 Ticket #614 (Write documentation on which files can be picked in each format) closed by curtis
fixed: moved to  ome:#4176
04:45 Ticket #167 (Motion JPEG-B support for single-image QuickTime movies is broken) closed by curtis
fixed: moved to  ome:#4087
04:45 Ticket #497 (Allow user to specify dimensions during stack concatenation) closed by curtis
fixed: moved to  ome:#4126
04:45 Ticket #518 (Allow exporter plugin to export to multiple files) closed by curtis
fixed: moved to  ome:#4136
04:45 Ticket #587 (Move color options to a separate dialog) closed by curtis
fixed: moved to  ome:#4164
04:45 Ticket #498 (Consider using either JUnit or TestNG for all tests) closed by curtis
fixed: moved to  ome:#4127
04:45 Ticket #305 (Handle mixed OME/non-OME XML blocks) closed by curtis
fixed: moved to  ome:#4100
04:45 Ticket #589 (Add support for TIFF files with FillOrder == 2) closed by curtis
fixed: moved to  ome:#4166
04:45 Ticket #591 (Writers do not support overwriting metadata) closed by curtis
fixed: moved to  ome:#4167
04:45 Ticket #593 (Add support for Micro-CT VOL files) closed by curtis
fixed: moved to  ome:#4169
04:45 Ticket #594 (Double-check Image -> ROI linkages) closed by curtis
fixed: moved to  ome:#4170
04:45 Ticket #595 (Overwriting compressed planes doesn't always work) closed by curtis
fixed: moved to  ome:#4171
04:45 Ticket #645 (Eliminate log4j warning messages) closed by curtis
fixed: moved to  ome:#4188
04:45 Ticket #537 (Add tests for non-core metadata consistency) closed by curtis
fixed: moved to  ome:#4144
04:45 Ticket #538 (Allow MD5 tests to accept an alternate hash) closed by curtis
fixed: moved to  ome:#4145
04:45 Ticket #540 (Add Hudson jobs to run data-driven tests) closed by curtis
fixed: moved to  ome:#4146
04:45 Ticket #194 (Investigate usage of JMF library) closed by curtis
fixed: moved to  ome:#4093
04:45 Ticket #475 (Add support for Intervision MV format) closed by curtis
fixed: moved to  ome:#4120
04:45 Ticket #42 (Support for QuickTime Sorenson 3 codec) closed by curtis
fixed: moved to  ome:#4082
04:45 Ticket #308 (Sort data repository into different categories) closed by curtis
fixed: moved to  ome:#4101
04:45 Ticket #157 (More Bio-Formats sample data in various formats) closed by curtis
fixed: moved to  ome:#4086
04:45 Ticket #80 (Update OME-TIFF web site to reflect proposed modifications) closed by curtis
fixed: moved to  ome:#4085
04:45 Ticket #179 (Add support for compressed LIM files) closed by curtis
fixed: moved to  ome:#4091
04:45 Ticket #358 (Investigate JHOVE for file format recognition) closed by curtis
fixed: moved to  ome:#4109
04:45 Ticket #344 (More robust support for 1, 2 and 4 bit images) closed by curtis
fixed: moved to  ome:#4107
04:45 Ticket #325 (More flexible window naming) closed by curtis
fixed: moved to  ome:#4105
04:45 Ticket #397 (Add support for .nex file format) closed by curtis
fixed: moved to  ome:#4113
04:45 Ticket #639 (Make sure that static fields are being used properly) closed by curtis
fixed: moved to  ome:#4183
04:45 Ticket #398 (Better support for N-dimensional data) closed by curtis
fixed: moved to  ome:#4114
04:45 Ticket #414 (Serialize reader state) closed by curtis
fixed: moved to  ome:#4116
04:45 Ticket #412 (Add support for scanning microscopy formats) closed by curtis
fixed: moved to  ome:#4115
04:45 Ticket #499 (AVI writer does not support saving tiles) closed by curtis
fixed: moved to  ome:#4128
04:45 Ticket #635 (Add support for Image-Pro .ips metadata files) closed by curtis
fixed: moved to  ome:#4180
04:45 Ticket #592 (Slidebook pixel data is not always correct) closed by curtis
fixed: moved to  ome:#4168
04:45 Ticket #522 (Add support for Fuji LAS 3000 files) closed by curtis
fixed: moved to  ome:#4137
04:45 Ticket #541 (Add support for Varian FID files) closed by curtis
fixed: moved to  ome:#4147
04:45 Ticket #546 (Make findbugs happy) closed by curtis
fixed: moved to  ome:#4149
04:45 Ticket #553 (Add support for Zeiss Axiovision TIFFs) closed by curtis
fixed: moved to  ome:#4151
04:45 Ticket #27 (Write to SDT format) closed by curtis
fixed: moved to  ome:#4081
04:45 Ticket #575 (Make it easier to get/set the pixels' compression type) closed by curtis
fixed: moved to  ome:#4157
04:45 Ticket #582 (Consider standarizing some original metadata keys) closed by curtis
fixed: moved to  ome:#4161
04:45 Ticket #650 (Update tiffcomment to allow editing on the command line) closed by curtis
fixed: moved to  ome:#4192
04:45 Ticket #644 (Parse additional Andor TIFF tags) closed by curtis
fixed: moved to  ome:#4187
04:45 Ticket #647 (Add conversion convenience methods to FormatTools) closed by curtis
fixed: moved to  ome:#4189
04:45 Ticket #648 (Add reader wrapper that provides simpler tile access) closed by curtis
fixed: moved to  ome:#4190
04:45 Ticket #649 (Add IFormatWriter.saveBytes signatures that accept a Region) closed by curtis
fixed: moved to  ome:#4191
04:45 Ticket #636 (Allow ImageReader to call isThisType(..., false)) closed by curtis
fixed: moved to  ome:#4181
04:45 Ticket #508 (Allow unit tests to be randomized) closed by curtis
fixed: moved to  ome:#4135
04:45 Ticket #78 (Implement OMERO upload and download logic) closed by curtis
fixed: moved to  ome:#4084
04:45 Ticket #302 (Add support for datasets produced by Vevo 770) closed by curtis
fixed: moved to  ome:#4098
04:45 Ticket #439 (Add support for HDF files produced by Huygens) closed by curtis
fixed: moved to  ome:#4104
04:45 Ticket #353 (Vector .psd files not supported) closed by curtis
fixed: moved to  ome:#4108
04:45 Ticket #376 (Add support for writing lossless JPEGs) closed by curtis
fixed: moved to  ome:#4110
04:45 Ticket #531 (Add md5 test for sub-images) closed by curtis
fixed: moved to  ome:#4138
04:45 Ticket #577 (Switch Leica LIF reader to use DOM parsing (instead of SAX)) closed by curtis
fixed: moved to  ome:#4158
04:45 Ticket #581 (Add support for DICOM supplement #145) closed by curtis
fixed: moved to  ome:#4159
04:45 Ticket #283 (OMERO download has strange CLASSPATH requirements) closed by curtis
fixed: moved to  ome:#4094
04:45 Ticket #180 (AVI codecs supported by NIS Elements) closed by curtis
fixed: moved to  ome:#4092
04:45 Ticket #304 (Create documentation on using Bio-Formats with Ice) closed by curtis
fixed: moved to  ome:#4099
04:45 Ticket #396 (Create bfsave.m script for MATLAB) closed by curtis
fixed: moved to  ome:#4112
04:45 Ticket #386 (Add support for Leica OME data) closed by curtis
fixed: moved to  ome:#4111
04:45 Ticket #472 (Bio-Formats plugin for OpenImageIO) closed by curtis
fixed: moved to  ome:#4118
04:45 Ticket #428 (Add enumeration for OME-XML versions) closed by curtis
fixed: moved to  ome:#4103
04:45 Ticket #336 (Add support for MPEG-2/.vob files) closed by curtis
fixed: moved to  ome:#4106
04:45 Ticket #477 (Add support for Mirax data) closed by curtis
fixed: moved to  ome:#4121
04:45 Ticket #478 (Add support for Hamamatsu NanoZoomer data) closed by curtis
fixed: moved to  ome:#4122
04:45 Ticket #480 (Add support for Hamamatsu VMS data) closed by curtis
fixed: moved to  ome:#4123
04:45 Ticket #620 (OpenlabReader thread safety) closed by curtis
fixed: moved to  ome:#4178
04:45 Ticket #600 (Make sure that JPEG-2000 decoding works in parallel) closed by curtis
fixed: moved to  ome:#4172
04:45 Ticket #602 (Move MetadataLevel, MetadataOptions, and DefaultMetadataOptions) closed by curtis
fixed: moved to  ome:#4173
04:45 Ticket #467 (Support for Group 3 Fax TIFF compression) closed by curtis
fixed: moved to  ome:#4117
04:45 Ticket #488 (Add support for OpenEXR files) closed by curtis
fixed: moved to  ome:#4125
04:45 Ticket #618 (Certain JPEG-2000 files are not read correctly) closed by curtis
fixed: moved to  ome:#4177
04:45 Ticket #638 (Add support for Zeiss LSM files that have differing bits per sample) closed by curtis
fixed: moved to  ome:#4182
04:45 Ticket #642 (Add better isThisType tests) closed by curtis
fixed: moved to  ome:#4186
04:45 Ticket #560 (Fix multi-line description MetaMorph ND files) closed by curtis
fixed: moved to  ome:#4153
04:45 Ticket #294 (Add support for Aquacosmos .naf format) closed by curtis
fixed: moved to  ome:#4096
04:45 Ticket #297 (Add support for Patch-Master electrophysiology files) closed by curtis
fixed: moved to  ome:#4097
04:45 Ticket #532 (Add test for leaking file handles) closed by curtis
fixed: moved to  ome:#4139
04:45 Ticket #55 (Support for Volocity format) closed by curtis
fixed: moved to  ome:#4083
04:45 Ticket #552 (Add support for Zeiss .lms files) closed by curtis
fixed: moved to  ome:#4150
04:45 Ticket #606 (Try to eliminate the updater's file renaming requirement on Windows) closed by curtis
fixed: moved to  ome:#4174
04:45 Ticket #585 (Make error message windows more friendly) closed by curtis
fixed: moved to  ome:#4163
04:45 Ticket #588 (Consider writing decoder for compressed Flex files) closed by curtis
fixed: moved to  ome:#4165
04:45 Ticket #609 (Add option to bfconvert for saving autoscaled images) closed by curtis
fixed: moved to  ome:#4175
04:45 Ticket #500 (APNG writer does not support saving tiles) closed by curtis
fixed: moved to  ome:#4129
04:45 Ticket #501 (Java writer does not support saving tiles) closed by curtis
fixed: moved to  ome:#4130
04:45 Ticket #502 (JPEG-2000 writer does not support saving tiles) closed by curtis
fixed: moved to  ome:#4131
04:45 Ticket #503 (JPEG writer does not support saving tiles) closed by curtis
fixed: moved to  ome:#4132
04:45 Ticket #504 (OME-XML writer does not support saving tiles) closed by curtis
fixed: moved to  ome:#4133
04:45 Ticket #505 (TIFF writer does not support saving tiles whose width is smaller than the ...) closed by curtis
fixed: moved to  ome:#4134
04:45 Ticket #629 (Add support for Leica Stereo Microscope data) closed by curtis
fixed: moved to  ome:#4179
04:45 Ticket #563 (Add support for OME-TIFF files produced by Leica Matrix scanner) closed by curtis
fixed: moved to  ome:#4154
04:45 Ticket #565 (Expand (and clean up) use of new 'setWriteSequentially' method) closed by curtis
fixed: moved to  ome:#4155
04:45 Ticket #641 (Add support for Zeiss FCS files) closed by curtis
fixed: moved to  ome:#4185
04:45 Ticket #640 (Add a few more options to bfconvert) closed by curtis
fixed: moved to  ome:#4184
04:45 Ticket #533 (Add test that reads planes in a random order) closed by curtis
fixed: moved to  ome:#4140
04:45 Ticket #534 (Add test for consistent type checking) closed by curtis
fixed: moved to  ome:#4141
04:45 Ticket #544 (Native support for Quicktime Sorenson 1 codec (SVQ1)) closed by curtis
fixed: moved to  ome:#4148
04:45 Ticket #625 (Add support for MetaXpress data) closed by curtis
fixed: moved to  ome:#4160
04:45 Ticket #535 (Allow tests to be run on files in memory) closed by curtis
fixed: moved to  ome:#4142
04:45 Ticket #536 (Consider changing test configuration file format) closed by curtis
fixed: moved to  ome:#4143
04:45 Ticket #584 (Data repository cleanup) closed by curtis
fixed: moved to  ome:#4162
04:45 Ticket #573 (Add support for Olympus CellSens .vsi data) closed by curtis
fixed: moved to  ome:#4156
00:00 Milestone bio-formats-5.0 completed
This milestone is for long-term improvements without a more aggressive …
00:00 Milestone bio-formats-4.3 completed
Tickets for next major release of Bio-Formats, which includes the …

02/01/11:

09:45 Changeset [7612] by curtis
Serve Maven artifacts using Apache on port 80. Previously it was done via …

01/31/11:

18:00 Milestone slimplugin0.9 completed
Initial release of the plugin and distribution through Fiji.

01/29/11:

17:12 Ticket #660 (Non-instr versions of the functions not implemented) created by aivar
The marquardt functions as opposed to marquardt_instr functions are empty.
17:11 Ticket #659 (Error field is not filled correctly on time resolved front panel) created by aivar
The NR version of G-J returns an inverted version of A, as well as the …
17:09 Ticket #658 (Global fitting causes problem with Gauss Jordan when B is NULL.) created by aivar
The previous GJ implementation inverts the A matrix when B is NULL. This …
12:44 Ticket #657 (Add fit execution framework) created by paulbarber
Some overall framework to load some data, process in several ways …
12:43 Ticket #656 (Check what is meant by an 'iteration' and provide for this in ecf class.) created by paulbarber
The LOCI LM and GA code allows access to individual iterations of the …
12:42 Ticket #655 (Import ecf global curve library) created by paulbarber
Check source code for licenced code. Add licence and author, …
12:39 Ticket #654 (Basic UI and graphical output) created by paulbarber
Basic C++ (e.g. Qt) and/or java front and and graph plot.
12:38 Ticket #653 (Add support for non-exp fns to curve fitter class) created by paulbarber
e.g. stretched exp, rise time, generic functions.
12:37 Ticket #652 (Create a web site for slim-curve) created by paulbarber
Banner image. Centres/names involved. Links to other web sites and papers …
12:12 Changeset [7611] by aivar
Added float chisq_delta parameter to …
11:55 Changeset [7610] by curtis
Remove unnecessary include folder.
11:54 Changeset [7609] by curtis
Initial CMakeLists build file for slim-curve.
11:43 Changeset [7608] by paulbarber
Utility.h not needed.

01/28/11:

14:38 Changeset [7607] by paulbarber
Added single frequency phasor routine for lifetime. Added Non-negative …
14:37 Changeset [7606] by paulbarber
To compile in TRI2, moved declarations to top of relevant block. Added …

01/27/11:

23:59 Changeset [7605] by aivar
I had inverted the image to correspond with SLIMPlotter, but the natural …
23:57 Changeset [7604] by aivar
I had inverted the image to correspond with SLIMPlotter, but the natural …
23:56 Changeset [7603] by aivar
Thought there might be a bug here, so made the display table more flexible …
23:54 Changeset [7602] by aivar
Added TODO comment.
23:54 Changeset [7601] by aivar
Needed an out of bounds strategy.
23:53 Changeset [7600] by aivar
New 7x7 binner.
23:53 Changeset [7599] by aivar
Deleted some vestigial files.
23:39 Changeset [7598] by aivar
Parameter ordering problems. GrayNRCurveFitter was out of date.
14:50 Changeset [7597] by aivar
Fixed null pointer exception when library not found.
14:49 Changeset [7596] by aivar
Fixed null pointer exception when library not found.

01/26/11:

22:25 Changeset [7595] by curtis
Fix up LOCI Software POM structure.
17:36 Changeset [7594] by aivar
Commented out unused #include <ansi.h>
17:35 Changeset [7593] by aivar
Nar plugin dependency added (temporarily)

01/25/11:

23:21 Changeset [7592] by curtis
Remove obsolete svn:ignore property.
23:13 Changeset [7591] by curtis
Remove obsolete class.
23:12 Changeset [7590] by curtis
Add Deep Zoom plugin to umbrella POM.
22:50 Changeset [7589] by curtis
Remove Bio-Formats ITK project. Bio-Formats has moved to its own …
22:49 Changeset [7588] by curtis
Remove old JRE bundles.
22:43 Changeset [7587] by curtis
Remove Bio-Formats projects, and merge Maven branch. Bio-Formats has …
22:06 Changeset [7586] by curtis
Remove Bio-Formats branches and tags. Bio-Formats has moved to its own …
22:03 Changeset [7585] by curtis
Remove Bio-Formats branches and tags. Bio-Formats has moved to its own …

01/24/11:

18:21 Changeset [7584] by melissa
One more pixel data offset fix.
17:49 Changeset [7583] by melissa
Deprecated superfluous getHexString(byte[]) method.
17:48 Changeset [7582] by melissa
Prevent StringIndexOutOfBoundsException when file names start with "_".
15:50 Changeset [7581] by melissa
Prevent extra Plane(Timing).ExposureTime attributes from being populated.
08:20 Ticket #651 (Allow JPEG-2000 writer to use lossy compression) closed by melissa
fixed: (In [7580]) The JPEG-2000 writer can now use lossy or lossless …
08:20 Changeset [7580] by melissa
The JPEG-2000 writer can now use lossy or lossless compression. Closes …

01/22/11:

15:30 Changeset [7579] by melissa
Prevent potential AIOOB.
15:10 Ticket #651 (Allow JPEG-2000 writer to use lossy compression) created by melissa
getCompressionTypes() should return ["Lossy", "Lossless"], with "Lossless" …
11:50 Changeset [7578] by rlentz
Moved jocl.jar to lib directory and successfully ran sobel example on OSX
11:44 Changeset [7577] by rlentz
Michael Bien created a work around that allowed JOCL to work around a bug …

01/21/11:

23:19 Changeset [7576] by aivar
Project moved to ImageJ
23:13 Changeset [7575] by aivar
Added utility for dealing with native libraries.
22:27 Changeset [7574] by aivar
New utility class for dealing with native libraries.
21:26 Changeset [7573] by melissa
Backported a bunch of recent ND2 fixes to 4.1.
17:53 Changeset [7572] by curtis
Fix up save dialog behavior.
14:39 Changeset [7571] by melissa
Populate all of the wells, even if no image data is associated with them.
13:17 Changeset [7570] by melissa
Sanitize the XML before we parse it.
13:08 Changeset [7569] by curtis
Working version of Save As J2K plugin. Needed to call …
12:38 Changeset [7568] by melissa
Initial version of Metamorph TIFF HCS support.

01/20/11:

17:53 Changeset [7567] by curtis
Minor tweaks; still broken.
17:33 Changeset [7566] by curtis
Initial version of example JPEG2000 export plugin, courtesy of Albert …
14:51 Changeset [7565] by hinerm
Backport -r7564 to 4.2 branch.
14:49 Changeset [7564] by hinerm
Added a "dist" target to the bf-cpp project. Functionally identical to …
14:16 Changeset [7563] by hinerm
Backport r7562 to 4.2 branch.
14:11 Changeset [7562] by hinerm
Modified the dist target for BF-ITK to no longer copy unnecessary files on …
13:24 Changeset [7561] by melissa
Tweaked MetamorphReader's isThisType to prevent it from picking up files …
13:22 Changeset [7560] by melissa
Tweaked well name detection so that column indexes can only contain at …
13:07 Changeset [7559] by melissa
Clarified CLASSPATH requirements.
12:51 Changeset [7558] by melissa
Added some documentation on file export/conversion.
12:46 Ticket #650 (Update tiffcomment to allow editing on the command line) created by melissa
Right now, the only way to edit TIFF comments is using the GUI displayed …
12:45 Changeset [7557] by hinerm
Forward port from branch 4.2 changes - mistakenly committed to a branch …
12:24 Changeset [7556] by hinerm
Added the java class BioFormatsExtensionPrinter to the svn repository. …
12:22 Changeset [7555] by hinerm
Added a new java class to BF-CPP - BioFormatsExtensionPrinter - to …
12:18 Changeset [7554] by curtis
Add variable for controlling number of channels.

01/19/11:

15:40 Ticket #646 (OME-TIFFs cannot be opened in Fiji with file grouping turned on) closed by melissa
fixed: (In [7553]) Prevent an NPE when attempting to stitch datasets that aren't …
15:40 Changeset [7553] by melissa
Prevent an NPE when attempting to stitch datasets that aren't stitchable. …
14:36 Ticket #627 (Slidebook series grouping is not always correct) closed by melissa
fixed: The series grouping should be correct with r7552, but the pixel data still …
14:35 Changeset [7552] by melissa
Group together separate blocks of pixels that belong to the same stack. …
11:38 Changeset [7551] by melissa
Fixed various metadata population problems when working with multi-file …
11:34 Changeset [7550] by curtis
Migrate workflow project to ImageJ repository. New location is …
11:13 Changeset [7549] by curtis
Remove binary libraries (not needed with Maven).
11:11 Changeset [7548] by curtis
Convert LOCI workflow to Maven.

01/18/11:

13:09 Ticket #649 (Add IFormatWriter.saveBytes signatures that accept a Region) created by melissa
...instead of 4 ints specifying the region.
13:09 Ticket #648 (Add reader wrapper that provides simpler tile access) created by melissa
* void setTileWidth(int width) defaults to optimal width * void …
13:04 Ticket #647 (Add conversion convenience methods to FormatTools) created by melissa
Specifically: * static void convert(IFormatReader, IFormatWriter) * …
12:56 Ticket #646 (OME-TIFFs cannot be opened in Fiji with file grouping turned on) created by melissa
To reproduce: * start Fiji * select Plugins > LOCI > Bio-Formats …
12:35 Ticket #645 (Eliminate log4j warning messages) created by melissa
Several Bio-Formats-related tools still display log4j warning messages; …
12:34 Ticket #644 (Parse additional Andor TIFF tags) created by melissa
In particular: […] See the files in data/andor/benjamin/ for examples …
11:55 Changeset [7547] by aivar
Delete extraneous files
11:54 Changeset [7546] by aivar
Delete extraneous files
11:52 Changeset [7545] by aivar
Delete extraneous files
11:44 Changeset [7544] by melissa
Fixed channel name and wavelength population. See  omero:#3865.

01/17/11:

11:29 Ticket #643 (Slidebook files with maximum projections cannot be read) closed by melissa
fixed: The file mentioned above can now be read, but the pixel data for some …
11:27 Changeset [7543] by melissa
One more adjustment to SizeX/SizeY calculations. See #643.
11:07 Changeset [7542] by rlentz
Added eclipse jar export configuration file
11:01 Ticket #626 (Slidebook valid bits per pixel not parsed) closed by melissa
fixed: (In [7541]) Parse valid bits per pixel from Slidebook files. Closes #626.
11:01 Changeset [7541] by melissa
Parse valid bits per pixel from Slidebook files. Closes #626.
10:17 Changeset [7540] by rlentz
No change

01/14/11:

20:46 Changeset [7539] by aivar
JNI NativeLoader
13:18 Ticket #643 (Slidebook files with maximum projections cannot be read) created by melissa
See data/slidebook/vytas/worms.sld.
13:06 Ticket #642 (Add better isThisType tests) created by melissa
Two new tests should be added: * one in loci.formats.utests that times …
11:50 Ticket #612 (Multi-channel indexed color images treated incorrectly) closed by melissa
fixed: (In [7538]) Set 'falseColor' to true, so that lookup tables are not …
11:50 Changeset [7538] by melissa
Set 'falseColor' to true, so that lookup tables are not improperly …
11:22 Ticket #641 (Add support for Zeiss FCS files) created by melissa
See data in data/zeiss-fcs/chris/ and description in …
10:48 Changeset [7537] by rlentz
changed the implementation to floating point
09:15 Changeset [7536] by rlentz
Test from Michael Bien
08:53 Ticket #637 (Plane numbers in status bar are sometimes incorrect) closed by melissa
fixed: (In [7535]) Fixed plane index in status bar. Closes #637.
08:53 Changeset [7535] by melissa
Fixed plane index in status bar. Closes #637.

01/13/11:

21:44 Changeset [7534] by aivar
Multiple changes to get discovery and workflow save/restore to Preferences …
16:28 Changeset [7533] by rlentz
Configured for 64 bit linux.
16:15 Changeset [7532] by rlentz
16:13 Changeset [7531] by rlentz
14:40 Changeset [7530] by hinerm
Update bf-cpp proxy list to match latest Java source files.
14:32 Changeset [7529] by hinerm
Backport latest bf-itk to 4.2 branch.
13:56 Changeset [7528] by melissa
Corrected pixel type for 32-bit images, as Andor/Fluoview assumes that all …
13:46 Changeset [7527] by rlentz
13:29 Ticket #640 (Add a few more options to bfconvert) created by melissa
In particular: * '-range', similar to showinf's '-range' * '-channel', …
12:18 Changeset [7526] by aivar
Copied over workflow stuff from DeepZoom plugin.
12:17 Changeset [7525] by rlentz
10:58 Changeset [7524] by rlentz
Tested SobelFilter Sample under OSX with latest CUDA and jogamp libraries. …
09:47 Changeset [7523] by rlentz
Restructured libs and code to reflect CUDA 3.2 and Jogamp's signed build …

01/12/11:

20:05 Ticket #639 (Make sure that static fields are being used properly) created by melissa
There are several static (non-final) HashMaps/Hashtables throughout the …
20:05 Changeset [7522] by melissa
Make primitive type static variables volatile.
15:34 Changeset [7521] by rlentz
update
15:20 Changeset [7520] by rlentz
update
15:19 Changeset [7519] by rlentz
update
15:19 Changeset [7518] by rlentz
update
15:17 Changeset [7517] by rlentz
update 7
14:40 Changeset [7516] by aivar
You can now create a workflow, save to XML, create another workflow from …
13:20 Changeset [7515] by rlentz
update
12:17 Ticket #638 (Add support for Zeiss LSM files that have differing bits per sample) created by melissa
See the file in data/zeiss-lsm/aaron-o*/. Each non-thumbnail IFD has a …
11:35 Ticket #637 (Plane numbers in status bar are sometimes incorrect) created by melissa
See attached screenshot. Specifying a range of planes to open can cause …
10:39 Ticket #633 (FV1000 LUTs are not displayed correctly in ImageJ) closed by melissa
fixed: (In [7514]) Fixed indexed flag and LUT parsing. Closes #633.
10:39 Changeset [7514] by melissa
Fixed indexed flag and LUT parsing. Closes #633.
10:09 Changeset [7513] by hinerm
Enhanced ant dist script to copy BioFormatsIO.dll to the dist directory.

01/11/11:

21:29 Changeset [7512] by aivar
Made the test plugin input and output names more meaningful.
21:13 Changeset [7511] by aivar
Workflow updates, works with new PluginModule, hooks up to …
21:11 Changeset [7510] by aivar
Added new tests during test-driven development.
21:11 Changeset [7509] by aivar
This package is basically a copy of loci.multiinstanceplugin. Also …
15:07 Ticket #636 (Allow ImageReader to call isThisType(..., false)) created by melissa
There are three pieces to this ticket: 1) Add a setter to ImageReader …
14:28 Changeset [7508] by melissa
Fixed NPE.
14:27 Changeset [7507] by melissa
Backported changes to Openlab reader for importing HCS data.
13:53 Changeset [7506] by rlentz
Updated the Readme text to the following: ( Please ensure installation of …
13:45 Changeset [7505] by rlentz
No change here.
13:44 Changeset [7504] by rlentz
Several updates to clarify the examples provided to enable OpenCL …
13:20 Changeset [7503] by curtis
Backport r7494,r7496 bugfixes to 4.2 branch.
12:56 Changeset [7502] by melissa
Don't overwrite existing image names.
12:40 Changeset [7501] by rlentz
Added a readme This code was developed to show how to use JOCL to …
12:39 Changeset [7500] by melissa
Search more thoroughly for image descriptions. Image descriptions are no …
09:14 Changeset [7499] by melissa
Fixed compile error in r7498.
09:03 Changeset [7498] by melissa
Backported ScreenReader to 4.2.

01/10/11:

20:11 Changeset [7497] by aivar
Fleshed out WorkFlow.finalize. ModuleFactory now has a register method …
16:18 Changeset [7496] by curtis
Fix signedness averaging problem with convertTo8Bit method.
16:14 Changeset [7495] by aivar
Added proper ComponentFactory. Renamed chain -> wire, component -> …
15:56 Changeset [7494] by curtis
Fix problem where custom LUTs override grayscale mode. This happened …
14:22 Changeset [7493] by melissa
Slightly more robust well name checking.
10:25 Changeset [7492] by melissa
Fixed import that caused compile failure in r7491.
10:15 Changeset [7491] by melissa
Merged file grouping and channel name parsing fixes from trunk.

01/07/11:

17:22 Changeset [7490] by aivar
Added method call for Rick's project.
13:38 Changeset [7489] by melissa
Prevent potential NPE if the "Info" property is not set on the ImagePlus …
12:43 Changeset [7488] by melissa
Sanitize OME-XML before attempting to create a MetadataStore.

01/06/11:

10:56 Changeset [7487] by melissa
Use a ConcurrentHashMap instead of a HashMap.

01/05/11:

16:15 Changeset [7486] by melissa
Added optional cacheing of directory listings, courtesy of Lee Kamentsky.
14:19 Ticket #635 (Add support for Image-Pro .ips metadata files) created by melissa
See files in data/imagepro/alex/. The .ips file is some sort of metadata …
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