Timeline
02/22/11:
- 17:32 Changeset [7635] by
- Add ability to specify additional source files. Also clean up the Jar2Lib …
- 15:54 Changeset [7634] by
- Clean up wiscscan-java package a bit.
- 15:51 Changeset [7633] by
- Rename wiscscan-utils to wiscscan-java in base POM.
- 15:51 Changeset [7632] by
- Remove renamed wiscscan-utils project.
- 15:50 Changeset [7631] by
- Collect needed WiscScan Java code into a single aggregator project.
- 14:10 Changeset [7630] by
- Add ability to specify additional JARs to wrap.
02/21/11:
- 22:07 Changeset [7629] by
- Add separate settings for library vs. classpath JARs. Library JARs are …
- 15:23 Changeset [7628] by
- Enable cppwrap for flow-cytometry project.
- 15:23 Changeset [7627] by
- Add all dependencies to the library path. This is not a longterm …
02/20/11:
- 00:09 Changeset [7626] by
- Ostensibly working version of cppwrap-maven-plugin.
02/19/11:
- 11:35 Changeset [7625] by
- Fix minor issues with cppwrap project.
- 11:34 Changeset [7624] by
- Update target Java platform to 1.6.
02/18/11:
- 16:38 Changeset [7623] by
- Add new projects to toplevel build.
- 15:23 Changeset [7622] by
- Initial skeleton for jar2lib-based cppwrap Maven plugin.
- 15:21 Changeset [7621] by
- Use Jace r39, since nothing newer works yet.
- 10:19 Changeset [7620] by
- Clean up KerberosAuth, fix compile errors.
02/17/11:
- 15:01 Changeset [7619] by
- Added the source code for the kerberos login module.
- 14:42 Changeset [7618] by
- Initial skeleton for WiscScan utilities project. This project is intended …
02/15/11:
- 17:01 Changeset [7617] by
- Ignore Eclipse metadata.
- 17:00 Changeset [7616] by
- Update slim-plugin dependencies to match latest ImageJ2 project structure.
02/05/11:
- 12:50 Changeset [7615] by
- Tweak ImageJ1 version.
- 00:35 Changeset [7614] by
- Update to ImageJ v1.44.
02/04/11:
- 12:01 Changeset [7613] by
- Progress on OpenCL iterative 3D deconvolution.
02/02/11:
- 04:45 Ticket #425 (FB 863: Allow sending feedback from loci tools) closed by
- fixed: moved to ome:#4089
- 04:45 Ticket #473 (Support for CRi .im3 format) closed by
- fixed: moved to ome:#4119
- 04:45 Ticket #314 (Add support for vector data in PS/EPS files) closed by
- fixed: moved to ome:#4102
- 04:45 Ticket #559 (LSM reader XT linescan opened as XY) closed by
- fixed: moved to ome:#4152
- 04:45 Ticket #483 (Add support for Matlab matrix files) closed by
- fixed: moved to ome:#4124
- 04:45 Ticket #169 (LegacyQTWriter cannot save using Motion JPEG-B codec) closed by
- fixed: moved to ome:#4088
- 04:45 Ticket #172 (Better usage of JAI Image I/O Tools) closed by
- fixed: moved to ome:#4090
- 04:45 Ticket #286 (Investigate improving AVI support based on new AVI_Reader) closed by
- fixed: moved to ome:#4095
- 04:45 Ticket #614 (Write documentation on which files can be picked in each format) closed by
- fixed: moved to ome:#4176
- 04:45 Ticket #167 (Motion JPEG-B support for single-image QuickTime movies is broken) closed by
- fixed: moved to ome:#4087
- 04:45 Ticket #497 (Allow user to specify dimensions during stack concatenation) closed by
- fixed: moved to ome:#4126
- 04:45 Ticket #518 (Allow exporter plugin to export to multiple files) closed by
- fixed: moved to ome:#4136
- 04:45 Ticket #587 (Move color options to a separate dialog) closed by
- fixed: moved to ome:#4164
- 04:45 Ticket #498 (Consider using either JUnit or TestNG for all tests) closed by
- fixed: moved to ome:#4127
- 04:45 Ticket #305 (Handle mixed OME/non-OME XML blocks) closed by
- fixed: moved to ome:#4100
- 04:45 Ticket #589 (Add support for TIFF files with FillOrder == 2) closed by
- fixed: moved to ome:#4166
- 04:45 Ticket #591 (Writers do not support overwriting metadata) closed by
- fixed: moved to ome:#4167
- 04:45 Ticket #593 (Add support for Micro-CT VOL files) closed by
- fixed: moved to ome:#4169
- 04:45 Ticket #594 (Double-check Image -> ROI linkages) closed by
- fixed: moved to ome:#4170
- 04:45 Ticket #595 (Overwriting compressed planes doesn't always work) closed by
- fixed: moved to ome:#4171
- 04:45 Ticket #645 (Eliminate log4j warning messages) closed by
- fixed: moved to ome:#4188
- 04:45 Ticket #537 (Add tests for non-core metadata consistency) closed by
- fixed: moved to ome:#4144
- 04:45 Ticket #538 (Allow MD5 tests to accept an alternate hash) closed by
- fixed: moved to ome:#4145
- 04:45 Ticket #540 (Add Hudson jobs to run data-driven tests) closed by
- fixed: moved to ome:#4146
- 04:45 Ticket #194 (Investigate usage of JMF library) closed by
- fixed: moved to ome:#4093
- 04:45 Ticket #475 (Add support for Intervision MV format) closed by
- fixed: moved to ome:#4120
- 04:45 Ticket #42 (Support for QuickTime Sorenson 3 codec) closed by
- fixed: moved to ome:#4082
- 04:45 Ticket #308 (Sort data repository into different categories) closed by
- fixed: moved to ome:#4101
- 04:45 Ticket #157 (More Bio-Formats sample data in various formats) closed by
- fixed: moved to ome:#4086
- 04:45 Ticket #80 (Update OME-TIFF web site to reflect proposed modifications) closed by
- fixed: moved to ome:#4085
- 04:45 Ticket #179 (Add support for compressed LIM files) closed by
- fixed: moved to ome:#4091
- 04:45 Ticket #358 (Investigate JHOVE for file format recognition) closed by
- fixed: moved to ome:#4109
- 04:45 Ticket #344 (More robust support for 1, 2 and 4 bit images) closed by
- fixed: moved to ome:#4107
- 04:45 Ticket #325 (More flexible window naming) closed by
- fixed: moved to ome:#4105
- 04:45 Ticket #397 (Add support for .nex file format) closed by
- fixed: moved to ome:#4113
- 04:45 Ticket #639 (Make sure that static fields are being used properly) closed by
- fixed: moved to ome:#4183
- 04:45 Ticket #398 (Better support for N-dimensional data) closed by
- fixed: moved to ome:#4114
- 04:45 Ticket #414 (Serialize reader state) closed by
- fixed: moved to ome:#4116
- 04:45 Ticket #412 (Add support for scanning microscopy formats) closed by
- fixed: moved to ome:#4115
- 04:45 Ticket #499 (AVI writer does not support saving tiles) closed by
- fixed: moved to ome:#4128
- 04:45 Ticket #635 (Add support for Image-Pro .ips metadata files) closed by
- fixed: moved to ome:#4180
- 04:45 Ticket #592 (Slidebook pixel data is not always correct) closed by
- fixed: moved to ome:#4168
- 04:45 Ticket #522 (Add support for Fuji LAS 3000 files) closed by
- fixed: moved to ome:#4137
- 04:45 Ticket #541 (Add support for Varian FID files) closed by
- fixed: moved to ome:#4147
- 04:45 Ticket #546 (Make findbugs happy) closed by
- fixed: moved to ome:#4149
- 04:45 Ticket #553 (Add support for Zeiss Axiovision TIFFs) closed by
- fixed: moved to ome:#4151
- 04:45 Ticket #27 (Write to SDT format) closed by
- fixed: moved to ome:#4081
- 04:45 Ticket #575 (Make it easier to get/set the pixels' compression type) closed by
- fixed: moved to ome:#4157
- 04:45 Ticket #582 (Consider standarizing some original metadata keys) closed by
- fixed: moved to ome:#4161
- 04:45 Ticket #650 (Update tiffcomment to allow editing on the command line) closed by
- fixed: moved to ome:#4192
- 04:45 Ticket #644 (Parse additional Andor TIFF tags) closed by
- fixed: moved to ome:#4187
- 04:45 Ticket #647 (Add conversion convenience methods to FormatTools) closed by
- fixed: moved to ome:#4189
- 04:45 Ticket #648 (Add reader wrapper that provides simpler tile access) closed by
- fixed: moved to ome:#4190
- 04:45 Ticket #649 (Add IFormatWriter.saveBytes signatures that accept a Region) closed by
- fixed: moved to ome:#4191
- 04:45 Ticket #636 (Allow ImageReader to call isThisType(..., false)) closed by
- fixed: moved to ome:#4181
- 04:45 Ticket #508 (Allow unit tests to be randomized) closed by
- fixed: moved to ome:#4135
- 04:45 Ticket #78 (Implement OMERO upload and download logic) closed by
- fixed: moved to ome:#4084
- 04:45 Ticket #302 (Add support for datasets produced by Vevo 770) closed by
- fixed: moved to ome:#4098
- 04:45 Ticket #439 (Add support for HDF files produced by Huygens) closed by
- fixed: moved to ome:#4104
- 04:45 Ticket #353 (Vector .psd files not supported) closed by
- fixed: moved to ome:#4108
- 04:45 Ticket #376 (Add support for writing lossless JPEGs) closed by
- fixed: moved to ome:#4110
- 04:45 Ticket #531 (Add md5 test for sub-images) closed by
- fixed: moved to ome:#4138
- 04:45 Ticket #577 (Switch Leica LIF reader to use DOM parsing (instead of SAX)) closed by
- fixed: moved to ome:#4158
- 04:45 Ticket #581 (Add support for DICOM supplement #145) closed by
- fixed: moved to ome:#4159
- 04:45 Ticket #283 (OMERO download has strange CLASSPATH requirements) closed by
- fixed: moved to ome:#4094
- 04:45 Ticket #180 (AVI codecs supported by NIS Elements) closed by
- fixed: moved to ome:#4092
- 04:45 Ticket #304 (Create documentation on using Bio-Formats with Ice) closed by
- fixed: moved to ome:#4099
- 04:45 Ticket #396 (Create bfsave.m script for MATLAB) closed by
- fixed: moved to ome:#4112
- 04:45 Ticket #386 (Add support for Leica OME data) closed by
- fixed: moved to ome:#4111
- 04:45 Ticket #472 (Bio-Formats plugin for OpenImageIO) closed by
- fixed: moved to ome:#4118
- 04:45 Ticket #428 (Add enumeration for OME-XML versions) closed by
- fixed: moved to ome:#4103
- 04:45 Ticket #336 (Add support for MPEG-2/.vob files) closed by
- fixed: moved to ome:#4106
- 04:45 Ticket #477 (Add support for Mirax data) closed by
- fixed: moved to ome:#4121
- 04:45 Ticket #478 (Add support for Hamamatsu NanoZoomer data) closed by
- fixed: moved to ome:#4122
- 04:45 Ticket #480 (Add support for Hamamatsu VMS data) closed by
- fixed: moved to ome:#4123
- 04:45 Ticket #620 (OpenlabReader thread safety) closed by
- fixed: moved to ome:#4178
- 04:45 Ticket #600 (Make sure that JPEG-2000 decoding works in parallel) closed by
- fixed: moved to ome:#4172
- 04:45 Ticket #602 (Move MetadataLevel, MetadataOptions, and DefaultMetadataOptions) closed by
- fixed: moved to ome:#4173
- 04:45 Ticket #467 (Support for Group 3 Fax TIFF compression) closed by
- fixed: moved to ome:#4117
- 04:45 Ticket #488 (Add support for OpenEXR files) closed by
- fixed: moved to ome:#4125
- 04:45 Ticket #618 (Certain JPEG-2000 files are not read correctly) closed by
- fixed: moved to ome:#4177
- 04:45 Ticket #638 (Add support for Zeiss LSM files that have differing bits per sample) closed by
- fixed: moved to ome:#4182
- 04:45 Ticket #642 (Add better isThisType tests) closed by
- fixed: moved to ome:#4186
- 04:45 Ticket #560 (Fix multi-line description MetaMorph ND files) closed by
- fixed: moved to ome:#4153
- 04:45 Ticket #294 (Add support for Aquacosmos .naf format) closed by
- fixed: moved to ome:#4096
- 04:45 Ticket #297 (Add support for Patch-Master electrophysiology files) closed by
- fixed: moved to ome:#4097
- 04:45 Ticket #532 (Add test for leaking file handles) closed by
- fixed: moved to ome:#4139
- 04:45 Ticket #55 (Support for Volocity format) closed by
- fixed: moved to ome:#4083
- 04:45 Ticket #552 (Add support for Zeiss .lms files) closed by
- fixed: moved to ome:#4150
- 04:45 Ticket #606 (Try to eliminate the updater's file renaming requirement on Windows) closed by
- fixed: moved to ome:#4174
- 04:45 Ticket #585 (Make error message windows more friendly) closed by
- fixed: moved to ome:#4163
- 04:45 Ticket #588 (Consider writing decoder for compressed Flex files) closed by
- fixed: moved to ome:#4165
- 04:45 Ticket #609 (Add option to bfconvert for saving autoscaled images) closed by
- fixed: moved to ome:#4175
- 04:45 Ticket #500 (APNG writer does not support saving tiles) closed by
- fixed: moved to ome:#4129
- 04:45 Ticket #501 (Java writer does not support saving tiles) closed by
- fixed: moved to ome:#4130
- 04:45 Ticket #502 (JPEG-2000 writer does not support saving tiles) closed by
- fixed: moved to ome:#4131
- 04:45 Ticket #503 (JPEG writer does not support saving tiles) closed by
- fixed: moved to ome:#4132
- 04:45 Ticket #504 (OME-XML writer does not support saving tiles) closed by
- fixed: moved to ome:#4133
- 04:45 Ticket #505 (TIFF writer does not support saving tiles whose width is smaller than the ...) closed by
- fixed: moved to ome:#4134
- 04:45 Ticket #629 (Add support for Leica Stereo Microscope data) closed by
- fixed: moved to ome:#4179
- 04:45 Ticket #563 (Add support for OME-TIFF files produced by Leica Matrix scanner) closed by
- fixed: moved to ome:#4154
- 04:45 Ticket #565 (Expand (and clean up) use of new 'setWriteSequentially' method) closed by
- fixed: moved to ome:#4155
- 04:45 Ticket #641 (Add support for Zeiss FCS files) closed by
- fixed: moved to ome:#4185
- 04:45 Ticket #640 (Add a few more options to bfconvert) closed by
- fixed: moved to ome:#4184
- 04:45 Ticket #533 (Add test that reads planes in a random order) closed by
- fixed: moved to ome:#4140
- 04:45 Ticket #534 (Add test for consistent type checking) closed by
- fixed: moved to ome:#4141
- 04:45 Ticket #544 (Native support for Quicktime Sorenson 1 codec (SVQ1)) closed by
- fixed: moved to ome:#4148
- 04:45 Ticket #625 (Add support for MetaXpress data) closed by
- fixed: moved to ome:#4160
- 04:45 Ticket #535 (Allow tests to be run on files in memory) closed by
- fixed: moved to ome:#4142
- 04:45 Ticket #536 (Consider changing test configuration file format) closed by
- fixed: moved to ome:#4143
- 04:45 Ticket #584 (Data repository cleanup) closed by
- fixed: moved to ome:#4162
- 04:45 Ticket #573 (Add support for Olympus CellSens .vsi data) closed by
- fixed: moved to ome:#4156
- 00:00 Milestone bio-formats-5.0 completed
- This milestone is for long-term improvements without a more aggressive …
- 00:00 Milestone bio-formats-4.3 completed
- Tickets for next major release of Bio-Formats, which includes the …
02/01/11:
- 09:45 Changeset [7612] by
- Serve Maven artifacts using Apache on port 80. Previously it was done via …
01/31/11:
- 18:00 Milestone slimplugin0.9 completed
- Initial release of the plugin and distribution through Fiji.
01/29/11:
- 17:12 Ticket #660 (Non-instr versions of the functions not implemented) created by
- The marquardt functions as opposed to marquardt_instr functions are empty.
- 17:11 Ticket #659 (Error field is not filled correctly on time resolved front panel) created by
- The NR version of G-J returns an inverted version of A, as well as the …
- 17:09 Ticket #658 (Global fitting causes problem with Gauss Jordan when B is NULL.) created by
- The previous GJ implementation inverts the A matrix when B is NULL. This …
- 12:44 Ticket #657 (Add fit execution framework) created by
- Some overall framework to load some data, process in several ways …
- 12:43 Ticket #656 (Check what is meant by an 'iteration' and provide for this in ecf class.) created by
- The LOCI LM and GA code allows access to individual iterations of the …
- 12:42 Ticket #655 (Import ecf global curve library) created by
- Check source code for licenced code. Add licence and author, …
- 12:39 Ticket #654 (Basic UI and graphical output) created by
- Basic C++ (e.g. Qt) and/or java front and and graph plot.
- 12:38 Ticket #653 (Add support for non-exp fns to curve fitter class) created by
- e.g. stretched exp, rise time, generic functions.
- 12:37 Ticket #652 (Create a web site for slim-curve) created by
- Banner image. Centres/names involved. Links to other web sites and papers …
- 12:12 Changeset [7611] by
- Added float chisq_delta parameter to …
- 11:55 Changeset [7610] by
- Remove unnecessary include folder.
- 11:54 Changeset [7609] by
- Initial CMakeLists build file for slim-curve.
- 11:43 Changeset [7608] by
- Utility.h not needed.
01/28/11:
- 14:38 Changeset [7607] by
- Added single frequency phasor routine for lifetime. Added Non-negative …
- 14:37 Changeset [7606] by
- To compile in TRI2, moved declarations to top of relevant block. Added …
01/27/11:
- 23:59 Changeset [7605] by
- I had inverted the image to correspond with SLIMPlotter, but the natural …
- 23:57 Changeset [7604] by
- I had inverted the image to correspond with SLIMPlotter, but the natural …
- 23:56 Changeset [7603] by
- Thought there might be a bug here, so made the display table more flexible …
- 23:54 Changeset [7602] by
- Added TODO comment.
- 23:54 Changeset [7601] by
- Needed an out of bounds strategy.
- 23:53 Changeset [7600] by
- New 7x7 binner.
- 23:53 Changeset [7599] by
- Deleted some vestigial files.
- 23:39 Changeset [7598] by
- Parameter ordering problems. GrayNRCurveFitter was out of date.
- 14:50 Changeset [7597] by
- Fixed null pointer exception when library not found.
- 14:49 Changeset [7596] by
- Fixed null pointer exception when library not found.
01/26/11:
- 22:25 Changeset [7595] by
- Fix up LOCI Software POM structure.
- 17:36 Changeset [7594] by
- Commented out unused #include <ansi.h>
- 17:35 Changeset [7593] by
- Nar plugin dependency added (temporarily)
01/25/11:
- 23:21 Changeset [7592] by
- Remove obsolete svn:ignore property.
- 23:13 Changeset [7591] by
- Remove obsolete class.
- 23:12 Changeset [7590] by
- Add Deep Zoom plugin to umbrella POM.
- 22:50 Changeset [7589] by
- Remove Bio-Formats ITK project. Bio-Formats has moved to its own …
- 22:49 Changeset [7588] by
- Remove old JRE bundles.
- 22:43 Changeset [7587] by
- Remove Bio-Formats projects, and merge Maven branch. Bio-Formats has …
- 22:06 Changeset [7586] by
- Remove Bio-Formats branches and tags. Bio-Formats has moved to its own …
- 22:03 Changeset [7585] by
- Remove Bio-Formats branches and tags. Bio-Formats has moved to its own …
01/24/11:
- 18:21 Changeset [7584] by
- One more pixel data offset fix.
- 17:49 Changeset [7583] by
- Deprecated superfluous getHexString(byte[]) method.
- 17:48 Changeset [7582] by
- Prevent StringIndexOutOfBoundsException when file names start with "_".
- 15:50 Changeset [7581] by
- Prevent extra Plane(Timing).ExposureTime attributes from being populated.
- 08:20 Ticket #651 (Allow JPEG-2000 writer to use lossy compression) closed by
- fixed: (In [7580]) The JPEG-2000 writer can now use lossy or lossless …
- 08:20 Changeset [7580] by
- The JPEG-2000 writer can now use lossy or lossless compression. Closes …
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