Timeline


and

03/02/11:

17:59 Changeset [7638] by hanly
Made some changes & cleaned up debug code.
16:37 Changeset [7637] by hanly
Batch file to build cpp wrappers and copy the headers and compiled library …

02/25/11:

15:42 Changeset [7636] by hanly
Made some changes to debug.

02/23/11:

17:25 BioFormatsService edited by melissa
(diff)
17:14 TestingNotes edited by melissa
(diff)
17:01 Matlab edited by melissa
(diff)
17:00 Export edited by melissa
(diff)

02/22/11:

17:32 Changeset [7635] by curtis
Add ability to specify additional source files. Also clean up the Jar2Lib …
15:54 Changeset [7634] by curtis
Clean up wiscscan-java package a bit.
15:51 Changeset [7633] by curtis
Rename wiscscan-utils to wiscscan-java in base POM.
15:51 Changeset [7632] by curtis
Remove renamed wiscscan-utils project.
15:50 Changeset [7631] by curtis
Collect needed WiscScan Java code into a single aggregator project.
14:10 Changeset [7630] by curtis
Add ability to specify additional JARs to wrap.

02/21/11:

22:07 Changeset [7629] by curtis
Add separate settings for library vs. classpath JARs. Library JARs are …
15:23 Changeset [7628] by curtis
Enable cppwrap for flow-cytometry project.
15:23 Changeset [7627] by curtis
Add all dependencies to the library path. This is not a longterm …

02/20/11:

00:09 Changeset [7626] by curtis
Ostensibly working version of cppwrap-maven-plugin.

02/19/11:

11:35 Changeset [7625] by curtis
Fix minor issues with cppwrap project.
11:34 Changeset [7624] by curtis
Update target Java platform to 1.6.

02/18/11:

16:38 Changeset [7623] by curtis
Add new projects to toplevel build.
15:23 Changeset [7622] by curtis
Initial skeleton for jar2lib-based cppwrap Maven plugin.
15:21 Changeset [7621] by curtis
Use Jace r39, since nothing newer works yet.
10:19 Changeset [7620] by curtis
Clean up KerberosAuth, fix compile errors.

02/17/11:

15:01 Changeset [7619] by hanly
Added the source code for the kerberos login module.
14:42 Changeset [7618] by curtis
Initial skeleton for WiscScan utilities project. This project is intended …

02/15/11:

17:01 Changeset [7617] by curtis
Ignore Eclipse metadata.
17:00 Changeset [7616] by curtis
Update slim-plugin dependencies to match latest ImageJ2 project structure.

02/05/11:

12:50 Changeset [7615] by curtis
Tweak ImageJ1 version.
00:35 Changeset [7614] by curtis
Update to ImageJ v1.44.

02/04/11:

12:01 Changeset [7613] by rlentz
Progress on OpenCL iterative 3D deconvolution.

02/02/11:

04:45 Ticket #425 (FB 863: Allow sending feedback from loci tools) closed by curtis
fixed: moved to  ome:#4089
04:45 Ticket #473 (Support for CRi .im3 format) closed by curtis
fixed: moved to  ome:#4119
04:45 Ticket #314 (Add support for vector data in PS/EPS files) closed by curtis
fixed: moved to  ome:#4102
04:45 Ticket #559 (LSM reader XT linescan opened as XY) closed by curtis
fixed: moved to  ome:#4152
04:45 Ticket #483 (Add support for Matlab matrix files) closed by curtis
fixed: moved to  ome:#4124
04:45 Ticket #169 (LegacyQTWriter cannot save using Motion JPEG-B codec) closed by curtis
fixed: moved to  ome:#4088
04:45 Ticket #172 (Better usage of JAI Image I/O Tools) closed by curtis
fixed: moved to  ome:#4090
04:45 Ticket #286 (Investigate improving AVI support based on new AVI_Reader) closed by curtis
fixed: moved to  ome:#4095
04:45 Ticket #614 (Write documentation on which files can be picked in each format) closed by curtis
fixed: moved to  ome:#4176
04:45 Ticket #167 (Motion JPEG-B support for single-image QuickTime movies is broken) closed by curtis
fixed: moved to  ome:#4087
04:45 Ticket #497 (Allow user to specify dimensions during stack concatenation) closed by curtis
fixed: moved to  ome:#4126
04:45 Ticket #518 (Allow exporter plugin to export to multiple files) closed by curtis
fixed: moved to  ome:#4136
04:45 Ticket #587 (Move color options to a separate dialog) closed by curtis
fixed: moved to  ome:#4164
04:45 Ticket #498 (Consider using either JUnit or TestNG for all tests) closed by curtis
fixed: moved to  ome:#4127
04:45 Ticket #305 (Handle mixed OME/non-OME XML blocks) closed by curtis
fixed: moved to  ome:#4100
04:45 Ticket #589 (Add support for TIFF files with FillOrder == 2) closed by curtis
fixed: moved to  ome:#4166
04:45 Ticket #591 (Writers do not support overwriting metadata) closed by curtis
fixed: moved to  ome:#4167
04:45 Ticket #593 (Add support for Micro-CT VOL files) closed by curtis
fixed: moved to  ome:#4169
04:45 Ticket #594 (Double-check Image -> ROI linkages) closed by curtis
fixed: moved to  ome:#4170
04:45 Ticket #595 (Overwriting compressed planes doesn't always work) closed by curtis
fixed: moved to  ome:#4171
04:45 Ticket #645 (Eliminate log4j warning messages) closed by curtis
fixed: moved to  ome:#4188
04:45 Ticket #537 (Add tests for non-core metadata consistency) closed by curtis
fixed: moved to  ome:#4144
04:45 Ticket #538 (Allow MD5 tests to accept an alternate hash) closed by curtis
fixed: moved to  ome:#4145
04:45 Ticket #540 (Add Hudson jobs to run data-driven tests) closed by curtis
fixed: moved to  ome:#4146
04:45 Ticket #194 (Investigate usage of JMF library) closed by curtis
fixed: moved to  ome:#4093
04:45 Ticket #475 (Add support for Intervision MV format) closed by curtis
fixed: moved to  ome:#4120
04:45 Ticket #42 (Support for QuickTime Sorenson 3 codec) closed by curtis
fixed: moved to  ome:#4082
04:45 Ticket #308 (Sort data repository into different categories) closed by curtis
fixed: moved to  ome:#4101
04:45 Ticket #157 (More Bio-Formats sample data in various formats) closed by curtis
fixed: moved to  ome:#4086
04:45 Ticket #80 (Update OME-TIFF web site to reflect proposed modifications) closed by curtis
fixed: moved to  ome:#4085
04:45 Ticket #179 (Add support for compressed LIM files) closed by curtis
fixed: moved to  ome:#4091
04:45 Ticket #358 (Investigate JHOVE for file format recognition) closed by curtis
fixed: moved to  ome:#4109
04:45 Ticket #344 (More robust support for 1, 2 and 4 bit images) closed by curtis
fixed: moved to  ome:#4107
04:45 Ticket #325 (More flexible window naming) closed by curtis
fixed: moved to  ome:#4105
04:45 Ticket #397 (Add support for .nex file format) closed by curtis
fixed: moved to  ome:#4113
04:45 Ticket #639 (Make sure that static fields are being used properly) closed by curtis
fixed: moved to  ome:#4183
04:45 Ticket #398 (Better support for N-dimensional data) closed by curtis
fixed: moved to  ome:#4114
04:45 Ticket #414 (Serialize reader state) closed by curtis
fixed: moved to  ome:#4116
04:45 Ticket #412 (Add support for scanning microscopy formats) closed by curtis
fixed: moved to  ome:#4115
04:45 Ticket #499 (AVI writer does not support saving tiles) closed by curtis
fixed: moved to  ome:#4128
04:45 Ticket #635 (Add support for Image-Pro .ips metadata files) closed by curtis
fixed: moved to  ome:#4180
04:45 Ticket #592 (Slidebook pixel data is not always correct) closed by curtis
fixed: moved to  ome:#4168
04:45 Ticket #522 (Add support for Fuji LAS 3000 files) closed by curtis
fixed: moved to  ome:#4137
04:45 Ticket #541 (Add support for Varian FID files) closed by curtis
fixed: moved to  ome:#4147
04:45 Ticket #546 (Make findbugs happy) closed by curtis
fixed: moved to  ome:#4149
04:45 Ticket #553 (Add support for Zeiss Axiovision TIFFs) closed by curtis
fixed: moved to  ome:#4151
04:45 Ticket #27 (Write to SDT format) closed by curtis
fixed: moved to  ome:#4081
04:45 Ticket #575 (Make it easier to get/set the pixels' compression type) closed by curtis
fixed: moved to  ome:#4157
04:45 Ticket #582 (Consider standarizing some original metadata keys) closed by curtis
fixed: moved to  ome:#4161
04:45 Ticket #650 (Update tiffcomment to allow editing on the command line) closed by curtis
fixed: moved to  ome:#4192
04:45 Ticket #644 (Parse additional Andor TIFF tags) closed by curtis
fixed: moved to  ome:#4187
04:45 Ticket #647 (Add conversion convenience methods to FormatTools) closed by curtis
fixed: moved to  ome:#4189
04:45 Ticket #648 (Add reader wrapper that provides simpler tile access) closed by curtis
fixed: moved to  ome:#4190
04:45 Ticket #649 (Add IFormatWriter.saveBytes signatures that accept a Region) closed by curtis
fixed: moved to  ome:#4191
04:45 Ticket #636 (Allow ImageReader to call isThisType(..., false)) closed by curtis
fixed: moved to  ome:#4181
04:45 Ticket #508 (Allow unit tests to be randomized) closed by curtis
fixed: moved to  ome:#4135
04:45 Ticket #78 (Implement OMERO upload and download logic) closed by curtis
fixed: moved to  ome:#4084
04:45 Ticket #302 (Add support for datasets produced by Vevo 770) closed by curtis
fixed: moved to  ome:#4098
04:45 Ticket #439 (Add support for HDF files produced by Huygens) closed by curtis
fixed: moved to  ome:#4104
04:45 Ticket #353 (Vector .psd files not supported) closed by curtis
fixed: moved to  ome:#4108
04:45 Ticket #376 (Add support for writing lossless JPEGs) closed by curtis
fixed: moved to  ome:#4110
04:45 Ticket #531 (Add md5 test for sub-images) closed by curtis
fixed: moved to  ome:#4138
04:45 Ticket #577 (Switch Leica LIF reader to use DOM parsing (instead of SAX)) closed by curtis
fixed: moved to  ome:#4158
04:45 Ticket #581 (Add support for DICOM supplement #145) closed by curtis
fixed: moved to  ome:#4159
04:45 Ticket #283 (OMERO download has strange CLASSPATH requirements) closed by curtis
fixed: moved to  ome:#4094
04:45 Ticket #180 (AVI codecs supported by NIS Elements) closed by curtis
fixed: moved to  ome:#4092
04:45 Ticket #304 (Create documentation on using Bio-Formats with Ice) closed by curtis
fixed: moved to  ome:#4099
04:45 Ticket #396 (Create bfsave.m script for MATLAB) closed by curtis
fixed: moved to  ome:#4112
04:45 Ticket #386 (Add support for Leica OME data) closed by curtis
fixed: moved to  ome:#4111
04:45 Ticket #472 (Bio-Formats plugin for OpenImageIO) closed by curtis
fixed: moved to  ome:#4118
04:45 Ticket #428 (Add enumeration for OME-XML versions) closed by curtis
fixed: moved to  ome:#4103
04:45 Ticket #336 (Add support for MPEG-2/.vob files) closed by curtis
fixed: moved to  ome:#4106
04:45 Ticket #477 (Add support for Mirax data) closed by curtis
fixed: moved to  ome:#4121
04:45 Ticket #478 (Add support for Hamamatsu NanoZoomer data) closed by curtis
fixed: moved to  ome:#4122
04:45 Ticket #480 (Add support for Hamamatsu VMS data) closed by curtis
fixed: moved to  ome:#4123
04:45 Ticket #620 (OpenlabReader thread safety) closed by curtis
fixed: moved to  ome:#4178
04:45 Ticket #600 (Make sure that JPEG-2000 decoding works in parallel) closed by curtis
fixed: moved to  ome:#4172
04:45 Ticket #602 (Move MetadataLevel, MetadataOptions, and DefaultMetadataOptions) closed by curtis
fixed: moved to  ome:#4173
04:45 Ticket #467 (Support for Group 3 Fax TIFF compression) closed by curtis
fixed: moved to  ome:#4117
04:45 Ticket #488 (Add support for OpenEXR files) closed by curtis
fixed: moved to  ome:#4125
04:45 Ticket #618 (Certain JPEG-2000 files are not read correctly) closed by curtis
fixed: moved to  ome:#4177
04:45 Ticket #638 (Add support for Zeiss LSM files that have differing bits per sample) closed by curtis
fixed: moved to  ome:#4182
04:45 Ticket #642 (Add better isThisType tests) closed by curtis
fixed: moved to  ome:#4186
04:45 Ticket #560 (Fix multi-line description MetaMorph ND files) closed by curtis
fixed: moved to  ome:#4153
04:45 Ticket #294 (Add support for Aquacosmos .naf format) closed by curtis
fixed: moved to  ome:#4096
04:45 Ticket #297 (Add support for Patch-Master electrophysiology files) closed by curtis
fixed: moved to  ome:#4097
04:45 Ticket #532 (Add test for leaking file handles) closed by curtis
fixed: moved to  ome:#4139
04:45 Ticket #55 (Support for Volocity format) closed by curtis
fixed: moved to  ome:#4083
04:45 Ticket #552 (Add support for Zeiss .lms files) closed by curtis
fixed: moved to  ome:#4150
04:45 Ticket #606 (Try to eliminate the updater's file renaming requirement on Windows) closed by curtis
fixed: moved to  ome:#4174
04:45 Ticket #585 (Make error message windows more friendly) closed by curtis
fixed: moved to  ome:#4163
04:45 Ticket #588 (Consider writing decoder for compressed Flex files) closed by curtis
fixed: moved to  ome:#4165
04:45 Ticket #609 (Add option to bfconvert for saving autoscaled images) closed by curtis
fixed: moved to  ome:#4175
04:45 Ticket #500 (APNG writer does not support saving tiles) closed by curtis
fixed: moved to  ome:#4129
04:45 Ticket #501 (Java writer does not support saving tiles) closed by curtis
fixed: moved to  ome:#4130
04:45 Ticket #502 (JPEG-2000 writer does not support saving tiles) closed by curtis
fixed: moved to  ome:#4131
04:45 Ticket #503 (JPEG writer does not support saving tiles) closed by curtis
fixed: moved to  ome:#4132
04:45 Ticket #504 (OME-XML writer does not support saving tiles) closed by curtis
fixed: moved to  ome:#4133
04:45 Ticket #505 (TIFF writer does not support saving tiles whose width is smaller than the ...) closed by curtis
fixed: moved to  ome:#4134
04:45 Ticket #629 (Add support for Leica Stereo Microscope data) closed by curtis
fixed: moved to  ome:#4179
04:45 Ticket #563 (Add support for OME-TIFF files produced by Leica Matrix scanner) closed by curtis
fixed: moved to  ome:#4154
04:45 Ticket #565 (Expand (and clean up) use of new 'setWriteSequentially' method) closed by curtis
fixed: moved to  ome:#4155
04:45 Ticket #641 (Add support for Zeiss FCS files) closed by curtis
fixed: moved to  ome:#4185
04:45 Ticket #640 (Add a few more options to bfconvert) closed by curtis
fixed: moved to  ome:#4184
04:45 Ticket #533 (Add test that reads planes in a random order) closed by curtis
fixed: moved to  ome:#4140
04:45 Ticket #534 (Add test for consistent type checking) closed by curtis
fixed: moved to  ome:#4141
04:45 Ticket #544 (Native support for Quicktime Sorenson 1 codec (SVQ1)) closed by curtis
fixed: moved to  ome:#4148
04:45 Ticket #625 (Add support for MetaXpress data) closed by curtis
fixed: moved to  ome:#4160
04:45 Ticket #535 (Allow tests to be run on files in memory) closed by curtis
fixed: moved to  ome:#4142
04:45 Ticket #536 (Consider changing test configuration file format) closed by curtis
fixed: moved to  ome:#4143
04:45 Ticket #584 (Data repository cleanup) closed by curtis
fixed: moved to  ome:#4162
04:45 Ticket #573 (Add support for Olympus CellSens .vsi data) closed by curtis
fixed: moved to  ome:#4156
00:00 Milestone bio-formats-5.0 completed
This milestone is for long-term improvements without a more aggressive …
00:00 Milestone bio-formats-4.3 completed
Tickets for next major release of Bio-Formats, which includes the …
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