Timeline


and

04/12/12:

17:30 Changeset [7963] by aivar
SLIM Plugin: Refactor to allow different flavors of fitted images besides …
17:28 Changeset [7962] by aivar
SLIM Plugin: Masking UI. Trac #689 #690.
14:25 Ticket #702 (Optional colorized grayscale fitted images) created by aivar
Software should create colorized grayscale fitted images, like the ones in …
14:15 Changeset [7961] by aivar
SLIM Plugin: Masking infrastructure. Trac #689 #690.
14:12 Changeset [7960] by aivar
SLIM Plugin: Comment added.
10:37 Changeset [7959] by aivar
SLIM Plugin: Combined two sets of mask code.
03:19 Changeset [7958] by aivar
SLIM Plugin: Mask class to define and share masks for fitted images.

04/10/12:

17:46 Changeset [7957] by aivar
SLIM Plugin: Documentation tweak.
17:45 Changeset [7956] by aivar
SLIM Plugin: Checks for fitting images closing.
17:17 Ticket #701 (Lifetime LUT has too much green) created by aivar
The LUT has too much green in the middle. It is difficult to distinguish …
17:14 Ticket #700 (Binning is broken) created by aivar
Binning used to work but major refactoring leaves it broken.
16:49 Ticket #699 (Closing Histogram Tool makes it go away for the session) created by aivar
When you close the histogram tool it won't show up again until you restart …
11:32 Ticket #693 (Fitted plot lacking on decay graph sometimes) closed by aivar
fixed: Fixed with #696. The decay graph has some logic to cut off the fitted …
00:29 Changeset [7955] by avivekan
changes to plugin, and new flowcyto class created with only the methods …

04/09/12:

18:07 Ticket #698 (TRI2 and SLIM Plugin prompt cursors differ) created by aivar
Discrepancy when using a Prompt/IRF/Excitation.
15:34 Ticket #697 (Sometimes TRI2 and SLIMPlugin results agree, except for chi-square) created by aivar
Sometimes the results are in agreement, but the reduced chi-square is not …
10:49 Ticket #696 (Fitted results off, no fitted line shown) closed by aivar
fixed

04/08/12:

15:11 Changeset [7954] by aivar
See Trac ticket #696. Simple typo was causing the RLD fit estimate to …
14:58 Ticket #696 (Fitted results off, no fitted line shown) created by aivar
When fitting a YG standard results are around 0.22 ns rather than 2.2 or …

04/06/12:

14:01 Changeset [7953] by aivar
SLIM Curve: Look for project version instead of hardcoded "1.0-SNAPSHOT" …
13:55 Changeset [7952] by aivar
SLIM Curve: Added explicit version instead of inheriting from parent. …

04/05/12:

13:09 Changeset [7951] by aivar
SLIM Curve: Changed parent POM from 1.0-SNAPSHOT to 1.0.

04/04/12:

16:15 Ticket #695 (SLIMPlugin: Problem finding LUT when running from a shortcut.) closed by aivar
fixed: There was a problem finding the lut directory. IJ.getDirectory("luts") …
16:12 Changeset [7950] by aivar
SLIM Plugin: Trac #695 Problem finding LUT when running from a shortcut.
16:09 Ticket #695 (SLIMPlugin: Problem finding LUT when running from a shortcut.) created by aivar
When running Fiji from a shortcut under Linux, the file "lifetime.lut" …
15:01 Changeset [7949] by curtis
Update cppwrap to latest SNAPSHOT version
15:01 Changeset [7948] by curtis
Remove unnecessary cppwrap plugin reference
14:40 Changeset [7947] by curtis
Revert to snapshot numbering for LOCI parent POM This is temporarily …

04/03/12:

22:17 Changeset [7946] by curtis
Update cppwrap-maven-plugin to next SNAPSHOT
22:16 Changeset [7945] by curtis
Release version 1.0.0 of cppwrap-maven-plugin
22:14 Changeset [7944] by curtis
Update jar2lib to next SNAPSHOT version
22:11 Changeset [7943] by curtis
Update projects to use release version of parent Projects are now …
22:04 Changeset [7942] by curtis
Use release version numbering for LOCI parent POM This makes it easier to …
22:03 Changeset [7941] by curtis
Update to latest SciJava POM

03/30/12:

19:03 Ticket #688 (Creating fractional intensity and fractional contribution images from A ...) closed by aivar
fixed: When doing bi- and tri-exponential fits, the "Fitted Images" drop down in …
18:49 Ticket #694 (Fitted results off) created by aivar
Plugin results should agree with known lifetimes for fitting standards …
18:45 Ticket #693 (Fitted plot lacking on decay graph sometimes) created by aivar
The red fitted line sometimes doesn't show up on the decay graph. The fit …
17:08 Changeset [7940] by aivar
SLIM Plugin: Now plugin is under "Analyze"/"Lifetime"/"Spectral Lifetime …
16:49 Changeset [7939] by aivar
SLIM Plugin: Moved plugin from it's own "Lifetime" category to existing …
15:59 Changeset [7938] by aivar
SLIM Plugin: Moved plugin from it's own "Lifetime" category to existing …

03/29/12:

17:47 Changeset [7937] by aivar
SLIM Plugin: New "FitterEstimator" class was missing when fitting images; …
15:51 Ticket #692 (Save instrument responses (IRF) as ics instead of .irf) created by fong
For compatibility with TRI2.
15:50 Ticket #691 (Saving Cursors with each tif image) created by fong
For record keeping, it would be nice if the cursor positions in the fit …
15:48 Ticket #690 (Multi-layered filtering) created by fong
A feature that would help with the interpretation of the data is if there …
15:31 Ticket #689 (Ability to Mask from histogram - change non-included pixels to 0) created by fong
It would be great if the user could choose a range in the histogram and …
15:18 Ticket #688 (Creating fractional intensity and fractional contribution images from A ...) created by fong
The A (amplitude values) are not that helpful for lifetime users. It …
15:12 Ticket #687 (Display number of photons in fit) created by fong
We need an indicator of how many photons are in the fit to determine if we …
15:07 Ticket #686 (Log / Linear Scale on Fit y-axis) created by fong
It is very helpful to have to option to change the y-axis scale in the …
14:42 Ticket #685 (phasor plot) created by payoung2
This is definitely a long-term goal; nothing I expect to see in the near …
14:39 Ticket #684 (average IRF) created by payoung2
It would be great if we could create an average instrument response …

03/28/12:

17:37 Changeset [7936] by aivar
SLIM Plugin: Working on cursor problems.
17:23 Changeset [7935] by aivar
SLIM Plugin: Working on cursor problems.

03/26/12:

11:53 Changeset [7934] by curtis
Fix JDK6 compile errors Switching on Strings only works with JDK7+.
10:42 Ticket #683 (SLIM Plugin: Plugin confused whether there is a prompt.) created by aivar
Sometimes it looks as if a prompt is active when there is no prompt. Not …
10:40 Ticket #682 (SLIM Plugin: Flakey fitting) created by aivar
When dragging the transient start cursor around on gpl1.sdt's brightest …
10:37 Ticket #679 (Fitted transient graph problems) closed by aivar
fixed

03/23/12:

18:18 Ticket #678 (Transient cursors not applied properly) closed by aivar
fixed: My initial version of SLIM Plugin had only a start and stop cursor on the …
18:15 Ticket #680 (Cursors are flakey) closed by aivar
fixed
18:14 Ticket #681 (Plugin fails if lifetime LUT missing.) closed by aivar
fixed: When you install SLIM Plugin from the LOCI FIJI update site FIJI does a …
18:12 Changeset [7933] by aivar
SLIM Plugin: Ticket #681: Missing lifetime LUT crashes the plugin; display …
18:02 Changeset [7932] by avivekan
refactoring (1 of many to come)
18:01 Ticket #681 (Plugin fails if lifetime LUT missing.) created by aivar
If you download SLIMPlugin from the LOCI Fiji repository you don't get the …
17:53 Changeset [7931] by aivar
SLIM Plugin: Tidied up some very hacky code that called the native library …
16:55 Changeset [7930] by aivar
SLIM Plugin: Transient cursors not applied properly. Part of Ticket #678. …
16:53 Ticket #680 (Cursors are flakey) created by aivar
The cursors shown visually on the fitted decay graph and textually in the …
16:50 Ticket #679 (Fitted transient graph problems) created by aivar
The fitted transient graph, showing the data and fitted curve, had some …
16:16 Changeset [7929] by aivar
SLIM Plugin: Transient cursors not applied properly. Part of Ticket #678.
16:15 Ticket #678 (Transient cursors not applied properly) created by aivar
The three transient cursors (transient start, data start, transient end) …

03/22/12:

15:57 Changeset [7928] by kbriney
Populate structured annotations in injected XML with original Prairie …
12:53 Changeset [7927] by curtis
Add assembly for prairie-ome-tiff JAR with deps This bundles all the …

03/21/12:

15:09 Changeset [7926] by curtis
Move ImageJ macro files out of Java source folder For now, I put them in …

03/20/12:

15:16 Changeset [7925] by hinerm
Updated CMakeLists template for Windows CMakeLists.txt generated using …
13:44 Changeset [7924] by curtis
Update parent POM reference to latest version
13:43 Changeset [7923] by curtis
Update parent POM reference to latest version

03/16/12:

20:02 Ticket #677 (SLIM Plugin: Initial fit) closed by aivar
fixed
20:02 Ticket #675 (SLIM Plugin: Handle odd photon counts) closed by aivar
fixed: (In [7922]) SLIM Plugin: Working on Trac #674 Ensure TRI2 and SLIMPlugin …
20:02 Ticket #676 (SLIM Plugin: automatic refit broken) closed by aivar
fixed: (In [7922]) SLIM Plugin: Working on Trac #674 Ensure TRI2 and SLIMPlugin …
20:01 Changeset [7922] by aivar
SLIM Plugin: Working on Trac #674 Ensure TRI2 and SLIMPlugin results …
20:00 Changeset [7921] by aivar
SLIM Plugin: Working on Trac #674 Ensure TRI2 and SLIMPlugin results …
19:55 Ticket #677 (SLIM Plugin: Initial fit) created by aivar
When you open a FLIM image in TRI2 it automatically fits (0,0). SPC Image …
19:53 Ticket #676 (SLIM Plugin: automatic refit broken) created by aivar
If the user drags a cursor line or types in a new numeric setting an …
19:51 Ticket #675 (SLIM Plugin: Handle odd photon counts) created by aivar
Some .sdt files (i.e. 'gpl1.sdt') have all photon counts divisible by …

03/15/12:

17:22 Changeset [7920] by avivekan
new openFile method created

03/13/12:

22:07 Changeset [7919] by avivekan
open file method created for wiscscan
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